BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0449.0004.p (219 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5G8.1 B3K5G8_9BACI Transport system permease protein 320 8e-86 Q9K6E0.1 Q9K6E0_BACHD Iron (III) dicitrate transport system (Per... 219 1e-55 B1DIX8.1 B1DIX8_9BACL Transport system permease protein 213 8e-54 Q2B6S8.1 Q2B6S8_9BACI Iron(III) dicitrate ABC transporter, permease 211 4e-53 C0Z6L1.1 C0Z6L1_BREBN ABC transporter permease protein 210 8e-53 >B3K5G8.1 B3K5G8_9BACI Transport system permease protein Length = 347 Score = 320 bits (819), Expect = 8e-86, Method: Compositional matrix adjust. Identities = 161/217 (74%), Positives = 183/217 (84%) Query: 2 SIKLLPAAAVAGALIVSLLVYGLSWKKGVTPIRLVLIGIGLSAAAKAATTLMIVMSPAIS 61 SIKLLP A++AGAL++SLLVYGLSWKKGVTPIR+VLIGIGLSAAAKAATTLMIVMSPAIS Sbjct: 130 SIKLLPLASIAGALLISLLVYGLSWKKGVTPIRMVLIGIGLSAAAKAATTLMIVMSPAIS 189 Query: 62 ASKAYLWMTGSVYGASWDNVLTVLPAVLAGIPLALYFARSLNAQELGDDVAGSLGVTVQR 121 A KAYLW+TGSVYGASW NV T++P V+ G LAL F+RSLNAQELGDD+A SLGV VQR Sbjct: 190 AGKAYLWLTGSVYGASWQNVYTIVPVVVLGTLLALAFSRSLNAQELGDDIASSLGVKVQR 249 Query: 122 HRFVLVLIXXXXXXXXXXXXXXXXXXXLIAPHLARRWTGRLFGGLLVMSALTGGLLVFLA 181 HRF+L+LI LIAPH+ARR GRL+GG++++S L GGLLVF+A Sbjct: 250 HRFLLILISVVLAGTAVSVAGAIGFIGLIAPHIARRLVGRLYGGMMLVSGLIGGLLVFMA 309 Query: 182 DLIARTLFYPLDIPAGVFTAGIGAPFFIYMLFRNRNQ 218 DLIARTLFYPLDIPAG+FTAGIGAPFFIY+LFRNRNQ Sbjct: 310 DLIARTLFYPLDIPAGIFTAGIGAPFFIYLLFRNRNQ 346 >Q9K6E0.1 Q9K6E0_BACHD Iron (III) dicitrate transport system (Permease) Length = 346 Score = 219 bits (558), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 111/217 (51%), Positives = 151/217 (69%) Query: 1 VSIKLLPAAAVAGALIVSLLVYGLSWKKGVTPIRLVLIGIGLSAAAKAATTLMIVMSPAI 60 VSI LP AA+ GA +VS+++Y L+W KGVTPIRL+LIGIG++AA KA T+M+V+S Sbjct: 129 VSITWLPFAAIIGAGLVSIVIYLLAWNKGVTPIRLILIGIGVTAAMKAFVTMMLVLSDMA 188 Query: 61 SASKAYLWMTGSVYGASWDNVLTVLPAVLAGIPLALYFARSLNAQELGDDVAGSLGVTVQ 120 +K+YLW+TGS+YGA W +V +LP V IPL + A++L +ELGDD+A LGV VQ Sbjct: 189 VTTKSYLWLTGSLYGAHWQDVYAMLPWVAISIPLTMLMAQTLGVKELGDDIAQGLGVKVQ 248 Query: 121 RHRFVLVLIXXXXXXXXXXXXXXXXXXXLIAPHLARRWTGRLFGGLLVMSALTGGLLVFL 180 +RF L+ LIAPH++R GR + L+++S+ GG++V + Sbjct: 249 MYRFALLFTSVALAGSAVAFAGGIQFVGLIAPHISRMLVGRSYTSLVIVSSFIGGIIVVM 308 Query: 181 ADLIARTLFYPLDIPAGVFTAGIGAPFFIYMLFRNRN 217 AD++ART F PLDIPAGVFTA IGAP+FIY+L+RNRN Sbjct: 309 ADIVARTAFLPLDIPAGVFTAAIGAPYFIYLLYRNRN 345 >B1DIX8.1 B1DIX8_9BACL Transport system permease protein Length = 347 Score = 213 bits (542), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 110/219 (50%), Positives = 152/219 (69%), Gaps = 1/219 (0%) Query: 1 VSIKLLPAAAVAGALIVSLLVYGLSWKKGVTPIRLVLIGIGLSAAAKAATTLMIVMSPAI 60 VS+ +P AA+ GA V+ ++Y LSWK G +P+R+VLIG GLSAA K+ + + I+ SP Sbjct: 129 VSVHWMPVAAILGAYAVTFILYLLSWKNGASPLRMVLIGTGLSAAFKSISYMFIISSPYF 188 Query: 61 SASKAYLWMTGSVYGASW-DNVLTVLPAVLAGIPLALYFARSLNAQELGDDVAGSLGVTV 119 A++A +MTGS+YG+SW +V T+LP ++ +P AR +N Q LGD+VAGS G V Sbjct: 189 LANRAMTFMTGSIYGSSWAKDVYTLLPWLIVLLPATWLMARHINVQALGDEVAGSAGAHV 248 Query: 120 QRHRFVLVLIXXXXXXXXXXXXXXXXXXXLIAPHLARRWTGRLFGGLLVMSALTGGLLVF 179 Q+HRF+L+L+ LIAPH+AR+ G FGGLL +SAL G +L+ Sbjct: 249 QKHRFILLLLSVSLAGAAVAIGGAIAFIGLIAPHMARKLVGSSFGGLLPVSALIGAILLL 308 Query: 180 LADLIARTLFYPLDIPAGVFTAGIGAPFFIYMLFRNRNQ 218 ++DL+ART+F PLDIPAGVFTA IGAPFF++ML+R+RNQ Sbjct: 309 VSDLVARTVFAPLDIPAGVFTAAIGAPFFLFMLYRHRNQ 347 >Q2B6S8.1 Q2B6S8_9BACI Iron(III) dicitrate ABC transporter, permease Length = 351 Score = 211 bits (537), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 113/217 (52%), Positives = 151/217 (69%) Query: 1 VSIKLLPAAAVAGALIVSLLVYGLSWKKGVTPIRLVLIGIGLSAAAKAATTLMIVMSPAI 60 VSI+ +P AA AGA ++ LVY L+WK G +PIRLVLIGIG+S +A T LM+++ P Sbjct: 134 VSIEWMPVAAFAGAAAIAFLVYLLAWKNGSSPIRLVLIGIGISTLTQALTNLMMILGPIH 193 Query: 61 SASKAYLWMTGSVYGASWDNVLTVLPAVLAGIPLALYFARSLNAQELGDDVAGSLGVTVQ 120 AS+A +W+TG+V+G++WDNV ++P ++ LA+ FAR+LN QELGDDVA +G VQ Sbjct: 194 QASQANIWITGTVHGSNWDNVKIIVPWIILLSALAMIFARNLNIQELGDDVATGIGGAVQ 253 Query: 121 RHRFVLVLIXXXXXXXXXXXXXXXXXXXLIAPHLARRWTGRLFGGLLVMSALTGGLLVFL 180 RHRF+++++ L+APH+ARR G FG LL + L GG+LV Sbjct: 254 RHRFIMLMLSTGLIGGSVAFAGGIGFVGLMAPHIARRLVGSSFGALLPTAGLIGGILVMA 313 Query: 181 ADLIARTLFYPLDIPAGVFTAGIGAPFFIYMLFRNRN 217 ADLI RTLF PL+IPAGVFTA IGAP+FIY+LF+ RN Sbjct: 314 ADLIGRTLFSPLEIPAGVFTASIGAPYFIYLLFKTRN 350 >C0Z6L1.1 C0Z6L1_BREBN ABC transporter permease protein Length = 345 Score = 210 bits (534), Expect = 8e-53, Method: Compositional matrix adjust. Identities = 105/218 (48%), Positives = 149/218 (68%) Query: 1 VSIKLLPAAAVAGALIVSLLVYGLSWKKGVTPIRLVLIGIGLSAAAKAATTLMIVMSPAI 60 VSIK LP A GA + + L+Y LSWKKGVTP+RLV+IG+G+ AA A T++I+ SP + Sbjct: 128 VSIKWLPPIAFLGATLTTFLLYALSWKKGVTPLRLVMIGVGIKIAAGAIVTMLIMFSPFL 187 Query: 61 SASKAYLWMTGSVYGASWDNVLTVLPAVLAGIPLALYFARSLNAQELGDDVAGSLGVTVQ 120 +KA LW+TGS+YG W++V+ +LP V+ I +A AR +N Q+LGDD+A SLG ++Q Sbjct: 188 LQNKALLWLTGSIYGVDWNDVVMILPWVVGLILVACLLARRVNIQQLGDDLATSLGSSLQ 247 Query: 121 RHRFVLVLIXXXXXXXXXXXXXXXXXXXLIAPHLARRWTGRLFGGLLVMSALTGGLLVFL 180 RF+L++I L+APH+A++ G FGG + +SA G ++V L Sbjct: 248 LDRFLLLMICAALTGTAVSVGGDISFVALLAPHIAKQLIGPSFGGAMTLSAFLGAIIVLL 307 Query: 181 ADLIARTLFYPLDIPAGVFTAGIGAPFFIYMLFRNRNQ 218 ADLIAR F P+++P GVFT+ IGAPFFIY+L++NRN+ Sbjct: 308 ADLIARMAFSPIEVPVGVFTSAIGAPFFIYLLYKNRNR 345 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.142 0.428 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,138,884,351 Number of extensions: 41449576 Number of successful extensions: 188452 Number of sequences better than 1.0e-05: 4943 Number of HSP's gapped: 179688 Number of HSP's successfully gapped: 5288 Length of query: 219 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 89 Effective length of database: 1,835,964,253 Effective search space: 163400818517 Effective search space used: 163400818517 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 128 (53.9 bits)