BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0449.0001.p (419 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KC46.1 B3KC46_9BACI Tyrosyl-tRNA synthetase EC=6.1.1.1 762 0.0 C0ZDA0.1 C0ZDA0_BREBN Tyrosyl-tRNA synthetase EC=6.1.1.1 756 0.0 B1D712.1 B1D712_9BACL Tyrosyl-tRNA synthetase EC=6.1.1.1 739 0.0 C2W199.1 C2W199_BACCE Tyrosyl-tRNA synthetase 697 0.0 Q631P9.1 SYY2_BACCZ Tyrosyl-tRNA synthetase 2 EC=6.1.1.1 697 0.0 >B3KC46.1 B3KC46_9BACI Tyrosyl-tRNA synthetase EC=6.1.1.1 Length = 419 Score = 762 bits (1967), Expect = 0.0, Method: Compositional matrix adjust. Identities = 359/419 (85%), Positives = 392/419 (93%) Query: 1 LNIIDELEWRDAINQQTDAEGLRELTNTKSVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 60 +NIIDELEWRDAINQQTDAEGLRELTN KS+SLYCGVDPTGDSMHIGHLIPF++LKRFQL Sbjct: 1 MNIIDELEWRDAINQQTDAEGLRELTNEKSISLYCGVDPTGDSMHIGHLIPFIMLKRFQL 60 Query: 61 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQVQANVDALTAQMKKLFVTESDNQVRMV 120 AGHRPVILIGGATGTIGDPSGRQ+ERSLQTLEQVQANVDALT QMKKLFVTE DNQ+RMV Sbjct: 61 AGHRPVILIGGATGTIGDPSGRQTERSLQTLEQVQANVDALTGQMKKLFVTEGDNQIRMV 120 Query: 121 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLY 180 NNYDWTHKIN+IEFLRDYGKNFSIN+MLAKDVV+SRLDSGISFTEFSYQILQS+DYLHLY Sbjct: 121 NNYDWTHKINIIEFLRDYGKNFSINSMLAKDVVASRLDSGISFTEFSYQILQSVDYLHLY 180 Query: 181 QHEDVQLQVGGSDQWGNITSGLDLIRKKEGADAKVFGLTIPLMLKSDGTKFGKSAGGAIW 240 QHEDVQLQ+GGSDQWGNITSGLDLIRKKEG +AK FGLTIPLMLK+DGTKFGK+AGGAIW Sbjct: 181 QHEDVQLQIGGSDQWGNITSGLDLIRKKEGPEAKAFGLTIPLMLKADGTKFGKTAGGAIW 240 Query: 241 LDPKKTTPYEFYQFWANSDDRDVVKYLKYFTFLTREEIEALAEKVQTEPHKREAQKALAE 300 LDP KTTP+EFYQFWAN+DDRDVVKYLKYFTFLT+E+I+ LAEKVQ+EPHKREAQK LAE Sbjct: 241 LDPNKTTPFEFYQFWANTDDRDVVKYLKYFTFLTKEQIDELAEKVQSEPHKREAQKTLAE 300 Query: 301 EMTRFVHGEELLEQAKRITAALFSGDIRSLTAEEIEEGFKEMPTYTSGKESKNIVDWLVD 360 EMTRFVHGEE+LEQAKRITAALFSGDI+SLTA+EIE+GFKEMPT+ + E+KNIVDWLVD Sbjct: 301 EMTRFVHGEEMLEQAKRITAALFSGDIKSLTADEIEQGFKEMPTFEATPETKNIVDWLVD 360 Query: 361 LGIEPSKRQAREDITKGAISLNGERVTELGTEVTAEDAXXXXXXXXXXXXXNYSLVKLA 419 LGIEPSKRQAREDITKGAIS+NGERV++L EVTA+ A NYSLVK++ Sbjct: 361 LGIEPSKRQAREDITKGAISMNGERVSDLDHEVTADQAIGGRFIIIRKGKKNYSLVKMS 419 >C0ZDA0.1 C0ZDA0_BREBN Tyrosyl-tRNA synthetase EC=6.1.1.1 Length = 422 Score = 756 bits (1953), Expect = 0.0, Method: Compositional matrix adjust. Identities = 358/419 (85%), Positives = 391/419 (93%) Query: 1 LNIIDELEWRDAINQQTDAEGLRELTNTKSVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 60 +NIIDELEWR+A+NQQTDAEGLRELTN K+VSLYCGVDPTGDSMHIGHLIPFMVLKRFQL Sbjct: 3 VNIIDELEWREAVNQQTDAEGLRELTNEKAVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 62 Query: 61 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQVQANVDALTAQMKKLFVTESDNQVRMV 120 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQ+Q NVD LTAQMKKLF+TE DNQ+R+V Sbjct: 63 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQIQENVDKLTAQMKKLFITEGDNQIRLV 122 Query: 121 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLY 180 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRL+SGISFTEFSYQILQSLDYLHLY Sbjct: 123 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLESGISFTEFSYQILQSLDYLHLY 182 Query: 181 QHEDVQLQVGGSDQWGNITSGLDLIRKKEGADAKVFGLTIPLMLKSDGTKFGKSAGGAIW 240 +HEDVQLQ+GGSDQWGNITSGLDLIRKKEG++AK FGLTIPLMLK+DGTKFGK+AGGAIW Sbjct: 183 KHEDVQLQIGGSDQWGNITSGLDLIRKKEGSEAKAFGLTIPLMLKADGTKFGKTAGGAIW 242 Query: 241 LDPKKTTPYEFYQFWANSDDRDVVKYLKYFTFLTREEIEALAEKVQTEPHKREAQKALAE 300 LDP KTTP+EFYQFWAN+DDRDVVKYLKYFTFL++E+IE LAEKVQ+EPHKREAQKALAE Sbjct: 243 LDPNKTTPFEFYQFWANTDDRDVVKYLKYFTFLSKEQIEELAEKVQSEPHKREAQKALAE 302 Query: 301 EMTRFVHGEELLEQAKRITAALFSGDIRSLTAEEIEEGFKEMPTYTSGKESKNIVDWLVD 360 EMTRFVHGEELLEQAKRITAALF+GDI+SL+A+EIE+GFKEMPT+ S E+KNIVDWLV+ Sbjct: 303 EMTRFVHGEELLEQAKRITAALFTGDIKSLSADEIEQGFKEMPTFESTLETKNIVDWLVE 362 Query: 361 LGIEPSKRQAREDITKGAISLNGERVTELGTEVTAEDAXXXXXXXXXXXXXNYSLVKLA 419 +GIEPSKRQAREDITKGAIS+NGERVT+L EVT A NYSLVKL+ Sbjct: 363 IGIEPSKRQAREDITKGAISMNGERVTDLELEVTPSLAIGGRFIIIRKGKKNYSLVKLS 421 >B1D712.1 B1D712_9BACL Tyrosyl-tRNA synthetase EC=6.1.1.1 Length = 419 Score = 739 bits (1907), Expect = 0.0, Method: Compositional matrix adjust. Identities = 350/419 (83%), Positives = 386/419 (92%) Query: 1 LNIIDELEWRDAINQQTDAEGLRELTNTKSVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 60 +NIIDELEWRDAINQQTDAEGLRELT+ K+VSLYCGVDPTGDSMHIGHLIPFMVLKRFQL Sbjct: 1 MNIIDELEWRDAINQQTDAEGLRELTSEKAVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 60 Query: 61 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQVQANVDALTAQMKKLFVTESDNQVRMV 120 AGHRPVILIGGATGTIGDPSGR SERSLQTLEQ++ANV+AL AQ++KLF+TE DN +RMV Sbjct: 61 AGHRPVILIGGATGTIGDPSGRTSERSLQTLEQIEANVEALGAQLRKLFLTEGDNNMRMV 120 Query: 121 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLY 180 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRL+SGISFTEFSYQILQSLD+LHL+ Sbjct: 121 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLESGISFTEFSYQILQSLDFLHLF 180 Query: 181 QHEDVQLQVGGSDQWGNITSGLDLIRKKEGADAKVFGLTIPLMLKSDGTKFGKSAGGAIW 240 + EDVQLQ+GGSDQWGNITSGLDLIRKKEG+++K FGLTIPLMLK+DGTKFGK+AGGAIW Sbjct: 181 REEDVQLQIGGSDQWGNITSGLDLIRKKEGSESKAFGLTIPLMLKADGTKFGKTAGGAIW 240 Query: 241 LDPKKTTPYEFYQFWANSDDRDVVKYLKYFTFLTREEIEALAEKVQTEPHKREAQKALAE 300 LDP+KTTPYEFYQFWAN+DDRDVVKYLKYFTFL++EEIE LAEKV TEPHKREAQK LAE Sbjct: 241 LDPEKTTPYEFYQFWANTDDRDVVKYLKYFTFLSKEEIEGLAEKVATEPHKREAQKKLAE 300 Query: 301 EMTRFVHGEELLEQAKRITAALFSGDIRSLTAEEIEEGFKEMPTYTSGKESKNIVDWLVD 360 EMTRFVH EELL+QA RITAALFSGDI+SL+A+EIE+GFKEMPT+ S E+KNIVDWLVD Sbjct: 301 EMTRFVHSEELLQQALRITAALFSGDIKSLSADEIEQGFKEMPTFESTNEAKNIVDWLVD 360 Query: 361 LGIEPSKRQAREDITKGAISLNGERVTELGTEVTAEDAXXXXXXXXXXXXXNYSLVKLA 419 LGIEPSKRQAREDIT GAIS+NGERVT+L EV++E A YSLVK+A Sbjct: 361 LGIEPSKRQAREDITNGAISMNGERVTDLTLEVSSEHAIGGRFIIIRKGKKKYSLVKMA 419 >C2W199.1 C2W199_BACCE Tyrosyl-tRNA synthetase Length = 420 Score = 697 bits (1800), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/419 (78%), Positives = 373/419 (89%) Query: 1 LNIIDELEWRDAINQQTDAEGLRELTNTKSVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 60 +NIIDELEWR A+NQQTD EGLR+L K +SLYCGVDPTGDSMHIGHLIPFM++KRFQL Sbjct: 1 MNIIDELEWRGAVNQQTDEEGLRKLVEEKKISLYCGVDPTGDSMHIGHLIPFMMMKRFQL 60 Query: 61 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQVQANVDALTAQMKKLFVTESDNQVRMV 120 AGH PVILIGGATGTIGDPSGRQSER LQTLE VQ NVDALTAQMKKLF +++V+MV Sbjct: 61 AGHHPVILIGGATGTIGDPSGRQSERQLQTLEVVQHNVDALTAQMKKLFDFGGNSEVKMV 120 Query: 121 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLY 180 NNYDWTH+IN+IEFLRDYGKNFSIN+MLAKD+V+SRLD+GISFTEF+YQILQ++D+ HLY Sbjct: 121 NNYDWTHEINIIEFLRDYGKNFSINSMLAKDIVASRLDTGISFTEFTYQILQAMDFHHLY 180 Query: 181 QHEDVQLQVGGSDQWGNITSGLDLIRKKEGADAKVFGLTIPLMLKSDGTKFGKSAGGAIW 240 EDVQLQ+GGSDQWGNITSGLDLIRK EG +AKVFGLTIPL+LKSDGTKFGKSAGGA+W Sbjct: 181 TKEDVQLQIGGSDQWGNITSGLDLIRKLEGHEAKVFGLTIPLLLKSDGTKFGKSAGGAVW 240 Query: 241 LDPKKTTPYEFYQFWANSDDRDVVKYLKYFTFLTREEIEALAEKVQTEPHKREAQKALAE 300 LDP+KTTP+EFYQFW N+DDRDVVKYLKYFTFLT+E I+ LA KV+TEPHKREAQK LAE Sbjct: 241 LDPEKTTPFEFYQFWVNTDDRDVVKYLKYFTFLTKERIDELAAKVETEPHKREAQKVLAE 300 Query: 301 EMTRFVHGEELLEQAKRITAALFSGDIRSLTAEEIEEGFKEMPTYTSGKESKNIVDWLVD 360 EMT+FVHGEE L QA +ITAALFSGDI+SLTA+EIE+GFKEMPT+ S KE+KNIV+WLVD Sbjct: 301 EMTKFVHGEEALLQAVKITAALFSGDIKSLTADEIEQGFKEMPTFQSSKETKNIVEWLVD 360 Query: 361 LGIEPSKRQAREDITKGAISLNGERVTELGTEVTAEDAXXXXXXXXXXXXXNYSLVKLA 419 LGIEPS+RQAREDI GAIS+NGE+VT++GT+VT E++ NYSLVKL Sbjct: 361 LGIEPSRRQAREDINNGAISMNGEKVTDVGTDVTVENSFDGRFIIIRKGKKNYSLVKLG 419 >Q631P9.1 SYY2_BACCZ Tyrosyl-tRNA synthetase 2 EC=6.1.1.1 Length = 419 Score = 697 bits (1799), Expect = 0.0, Method: Compositional matrix adjust. Identities = 327/419 (78%), Positives = 374/419 (89%) Query: 1 LNIIDELEWRDAINQQTDAEGLRELTNTKSVSLYCGVDPTGDSMHIGHLIPFMVLKRFQL 60 +NIIDELEWR A+NQQTD EGLR+L K +SLYCGVDPTGDSMHIGHLIPFM++KRFQL Sbjct: 1 MNIIDELEWRGAVNQQTDEEGLRKLVEEKKISLYCGVDPTGDSMHIGHLIPFMMMKRFQL 60 Query: 61 AGHRPVILIGGATGTIGDPSGRQSERSLQTLEQVQANVDALTAQMKKLFVTESDNQVRMV 120 AGH PVILIGGATGTIGDPSGRQSER LQTLE VQ NVDALTAQMKKLF +++V+MV Sbjct: 61 AGHHPVILIGGATGTIGDPSGRQSERQLQTLEVVQHNVDALTAQMKKLFDFGGNSEVKMV 120 Query: 121 NNYDWTHKINVIEFLRDYGKNFSINTMLAKDVVSSRLDSGISFTEFSYQILQSLDYLHLY 180 NNYDWTH+IN+IEFLRDYGKNFSIN+MLAKD+V+SRLD+GISFTEF+YQILQ++D+ HLY Sbjct: 121 NNYDWTHEINIIEFLRDYGKNFSINSMLAKDIVASRLDTGISFTEFTYQILQAMDFHHLY 180 Query: 181 QHEDVQLQVGGSDQWGNITSGLDLIRKKEGADAKVFGLTIPLMLKSDGTKFGKSAGGAIW 240 + EDVQLQ+GGSDQWGNITSGLDLIRK EG +AKVFGLTIPL+LKSDGTKFGKSAGGA+W Sbjct: 181 KKEDVQLQIGGSDQWGNITSGLDLIRKLEGHEAKVFGLTIPLLLKSDGTKFGKSAGGAVW 240 Query: 241 LDPKKTTPYEFYQFWANSDDRDVVKYLKYFTFLTREEIEALAEKVQTEPHKREAQKALAE 300 LDP+KTTP+EFYQFW N+DDRDVVKYLKYFTFLT+E I+ LA KV+TEPHKREAQK LAE Sbjct: 241 LDPEKTTPFEFYQFWVNTDDRDVVKYLKYFTFLTKERIDELAVKVETEPHKREAQKVLAE 300 Query: 301 EMTRFVHGEELLEQAKRITAALFSGDIRSLTAEEIEEGFKEMPTYTSGKESKNIVDWLVD 360 EMT+FVHGEE L QA +ITAALFSGDI+SLTA+EIE+GFKEMPT+ S KE+KNIV+WLVD Sbjct: 301 EMTKFVHGEEALLQAVKITAALFSGDIKSLTADEIEQGFKEMPTFQSSKETKNIVEWLVD 360 Query: 361 LGIEPSKRQAREDITKGAISLNGERVTELGTEVTAEDAXXXXXXXXXXXXXNYSLVKLA 419 LGIEPS+RQAREDI GAIS+NGE+VT++GT+VT E++ NYSLVKL Sbjct: 361 LGIEPSRRQAREDINNGAISMNGEKVTDVGTDVTVENSFDGRFIIIRKGKKNYSLVKLG 419 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.133 0.379 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,335,948,592 Number of extensions: 96261738 Number of successful extensions: 302031 Number of sequences better than 1.0e-05: 1811 Number of HSP's gapped: 297304 Number of HSP's successfully gapped: 1817 Length of query: 419 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 281 Effective length of database: 1,760,596,133 Effective search space: 494727513373 Effective search space used: 494727513373 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)