BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0447.0014.p (437 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q3ABE1.1 Q3ABE1_CARHZ Putative uncharacterized protein 492 e-137 A4J8F4.1 A4J8F4_DESRM Putative uncharacterized protein 483 e-134 B8I522.1 B8I522_CLOCE Putative uncharacterized protein 474 e-131 B0TE18.1 B0TE18_HELMI Putative uncharacterized protein 471 e-131 Q896N6.1 Q896N6_CLOTE Thymidylate kinase EC=2.7.4.9 470 e-130 >Q3ABE1.1 Q3ABE1_CARHZ Putative uncharacterized protein Length = 686 Score = 492 bits (1267), Expect = e-137, Method: Compositional matrix adjust. Identities = 233/387 (60%), Positives = 284/387 (73%), Gaps = 8/387 (2%) Query: 10 KTPNRLVNEKSPYLLQHAHNPVDWYPWGXXXXXXXXXXXXPIFLSVGYSTCHWCHVMERE 69 + PNRL++EKSPYLLQHA+NPVDWYPWG P+FLS+GYSTCHWCHVMERE Sbjct: 2 RQPNRLIHEKSPYLLQHAYNPVDWYPWGIDAFKKALMEDKPVFLSIGYSTCHWCHVMERE 61 Query: 70 SFEDQEVAKLLNEHYVAIKVDREERPDIDALYMSVCQALTGSGGWPLTVLLTPEKKPFYA 129 SFED+EVA LLN+H+VAIKVDREERPD+D +YM+ CQA+TG GGWPLT+++TPEKKPF+A Sbjct: 62 SFEDEEVADLLNKHFVAIKVDREERPDVDQIYMTACQAMTGQGGWPLTIIMTPEKKPFFA 121 Query: 130 GTYFPKRQMFGRIGLMDVLEQIHRKWEQXXXXXXXXXXXXXXXXQSLDRKNXXXXXXXXX 189 GTYFPKR +GR GLM++L +I + WE Q++ + Sbjct: 122 GTYFPKRSKWGRPGLMEILTEIVKLWETDREQLLTISKRLYEFMQTIPQSKKGDLTEE-- 179 Query: 190 XXXXXXLLHEAYALYRRQFDEEYGGFGNAPKFPSPHNLSFLLAYSQMYNQPEALRMVEKT 249 +L +AY + +FD EYGGFG APKFP+PHNL FLL Y + + +AL M EKT Sbjct: 180 ------VLEKAYREFLGRFDSEYGGFGPAPKFPTPHNLIFLLRYWKRTGEEKALFMAEKT 233 Query: 250 LESMYRGGMYDHVGYGFSRYSTDREWLVPHFEKMLYDNALLAIAYLEAYQITGKPLYAEV 309 LE+M RGG+YDHVGYGF RYSTDREWLVPHFEKMLYDNALLA YLEAYQ T K YA + Sbjct: 234 LEAMARGGIYDHVGYGFHRYSTDREWLVPHFEKMLYDNALLAYTYLEAYQATKKEKYARI 293 Query: 310 AEQIFTYVQRDMTSPEGAFYSAEDADSEGVEGKFYVFTRQEIEEALGLEDMHSYCHVYGI 369 A ++FTYV+R MTSPE FYSAEDADSEGVEGK+YV+T E+++ LG E+ +C VY I Sbjct: 294 AREVFTYVKRKMTSPERGFYSAEDADSEGVEGKYYVWTPDEVKKVLGPEEGELFCRVYDI 353 Query: 370 TPEGNFEGANIPNLLQGLPDDMAERMG 396 TPEGNFEG NIPNL+ + +A+ +G Sbjct: 354 TPEGNFEGKNIPNLIHTDIELVAQEIG 380 >A4J8F4.1 A4J8F4_DESRM Putative uncharacterized protein Length = 690 Score = 483 bits (1244), Expect = e-134, Method: Compositional matrix adjust. Identities = 223/380 (58%), Positives = 277/380 (72%), Gaps = 8/380 (2%) Query: 5 LVTTHKTPNRLVNEKSPYLLQHAHNPVDWYPWGXXXXXXXXXXXXPIFLSVGYSTCHWCH 64 ++ T + NRL+NEKSPYLLQHAHNPVDWYPWG PIFLS+GYSTCHWCH Sbjct: 1 MIKTEQKSNRLINEKSPYLLQHAHNPVDWYPWGNEAFDMAKRVDKPIFLSIGYSTCHWCH 60 Query: 65 VMERESFEDQEVAKLLNEHYVAIKVDREERPDIDALYMSVCQALTGSGGWPLTVLLTPEK 124 VMERESFE +EVAK+LNEH+V+IKVDREERPDID +YM+VCQ+LTGSGGWPLT+++TP++ Sbjct: 61 VMERESFESEEVAKILNEHFVSIKVDREERPDIDQIYMNVCQSLTGSGGWPLTIMMTPDQ 120 Query: 125 KPFYAGTYFPKRQMFGRIGLMDVLEQIHRKWEQXXXXXXXXXXXXXXXXQSLDRKNXXXX 184 KPF+AGTYFPK+ +GR G+ ++LE + W+ QS Sbjct: 121 KPFFAGTYFPKQAQYGRPGITEILENVASLWKNERQHLLEVGDKLVSHMQS--------E 172 Query: 185 XXXXXXXXXXXLLHEAYALYRRQFDEEYGGFGNAPKFPSPHNLSFLLAYSQMYNQPEALR 244 +L +AY ++ + +D YGGFG APKFP+PHNL FLL Y + +AL Sbjct: 173 ASTAPGQLPADILDKAYHIFAQNYDATYGGFGTAPKFPTPHNLMFLLRYWHKTGEAKALS 232 Query: 245 MVEKTLESMYRGGMYDHVGYGFSRYSTDREWLVPHFEKMLYDNALLAIAYLEAYQITGKP 304 MVE+TL++M+RGG+YDH+G+GFSRYSTD++WLVPHFEKMLYDNALLA+A+ E YQITG P Sbjct: 233 MVEETLDAMHRGGIYDHIGFGFSRYSTDKKWLVPHFEKMLYDNALLALAFTETYQITGNP 292 Query: 305 LYAEVAEQIFTYVQRDMTSPEGAFYSAEDADSEGVEGKFYVFTRQEIEEALGLEDMHSYC 364 + VA++IFTY+ RDMTSPEG FYSAEDADSEGVEGKFYV+ +E+ LG D YC Sbjct: 293 RFGRVAKEIFTYILRDMTSPEGGFYSAEDADSEGVEGKFYVWRPEEVISLLGQVDGELYC 352 Query: 365 HVYGITPEGNFEGANIPNLL 384 Y IT GNFEG +IPNL+ Sbjct: 353 QYYDITSTGNFEGESIPNLI 372 >B8I522.1 B8I522_CLOCE Putative uncharacterized protein Length = 673 Score = 474 bits (1219), Expect = e-131, Method: Compositional matrix adjust. Identities = 222/381 (58%), Positives = 269/381 (70%), Gaps = 8/381 (2%) Query: 5 LVTTHKTPNRLVNEKSPYLLQHAHNPVDWYPWGXXXXXXXXXXXXPIFLSVGYSTCHWCH 64 + T ++ PN+L+NEKSPYLLQHAHNPVDWYPWG PIFLS+GYSTCHWCH Sbjct: 1 MTTNNRMPNKLINEKSPYLLQHAHNPVDWYPWGPEAFSRAVSEDKPIFLSIGYSTCHWCH 60 Query: 65 VMERESFEDQEVAKLLNEHYVAIKVDREERPDIDALYMSVCQALTGSGGWPLTVLLTPEK 124 VMERESFED+EVA +LN ++ IKVDREERPDID++YMSVCQALTG GGWPLTV LTP+K Sbjct: 61 VMERESFEDEEVAHILNRDFICIKVDREERPDIDSIYMSVCQALTGHGGWPLTVFLTPDK 120 Query: 125 KPFYAGTYFPKRQMFGRIGLMDVLEQIHRKWEQXXXXXXXXXXXXXXXXQSLDRKNXXXX 184 +PFYAGTYFPK G +GL+ +L + W+ + Sbjct: 121 QPFYAGTYFPKEDSKGLMGLISLLGSVKEAWDNKREHLLVSAENII--------NHVSKE 172 Query: 185 XXXXXXXXXXXLLHEAYALYRRQFDEEYGGFGNAPKFPSPHNLSFLLAYSQMYNQPEALR 244 ++ EA+A ++ FD +YGGFG +PKFPSPH L FLL Y +P AL Sbjct: 173 SISKDSKISSDIIQEAFAHFKYNFDSKYGGFGTSPKFPSPHTLLFLLRYWYTKKEPYALE 232 Query: 245 MVEKTLESMYRGGMYDHVGYGFSRYSTDREWLVPHFEKMLYDNALLAIAYLEAYQITGKP 304 MVEKTLESM GG++DH+G+GFSRYSTD++WLVPHFEKMLYDNALLAIAY EAY TG Sbjct: 233 MVEKTLESMKNGGIFDHIGFGFSRYSTDKKWLVPHFEKMLYDNALLAIAYGEAYSATGNK 292 Query: 305 LYAEVAEQIFTYVQRDMTSPEGAFYSAEDADSEGVEGKFYVFTRQEIEEALGLEDMHSYC 364 Y E A QI YVQRDM+S GAFYSAEDADSEGVEGKFY+++++E+ LG +D YC Sbjct: 293 NYEETARQILDYVQRDMSSQLGAFYSAEDADSEGVEGKFYIWSKEEVINVLGSKDGEEYC 352 Query: 365 HVYGITPEGNFEGANIPNLLQ 385 ++ I+P GNFEG NIPNL++ Sbjct: 353 RIFDISPSGNFEGLNIPNLIE 373 >B0TE18.1 B0TE18_HELMI Putative uncharacterized protein Length = 687 Score = 471 bits (1212), Expect = e-131, Method: Compositional matrix adjust. Identities = 224/379 (59%), Positives = 273/379 (72%), Gaps = 7/379 (1%) Query: 8 THKTPNRLVNEKSPYLLQHAHNPVDWYPWGXXXXXXXXXXXXPIFLSVGYSTCHWCHVME 67 T + PNRL+ EKSPYLLQHA+NPV+WYPWG P+FLSVGYSTCHWCHVME Sbjct: 5 TSRKPNRLIQEKSPYLLQHAYNPVEWYPWGEEAFTRAKEQDKPVFLSVGYSTCHWCHVME 64 Query: 68 RESFEDQEVAKLLNEHYVAIKVDREERPDIDALYMSVCQALTGSGGWPLTVLLTPEKKPF 127 RESFED+EVA LNEH++++KVDREERPD+D +YM+VCQA+TG GGWPLTV++TP+KKPF Sbjct: 65 RESFEDEEVAAYLNEHFISVKVDREERPDVDHIYMTVCQAITGHGGWPLTVIMTPDKKPF 124 Query: 128 YAGTYFPKRQMFGRIGLMDVLEQIHRKWEQXXXXXXXXXXXXXXXXQSLDRKNXXXXXXX 187 +AGTYFPKR G GL+D+LE + +W+ Q + N Sbjct: 125 FAGTYFPKRSRQGLAGLLDILEAVVDQWKNDRGKLVAAGDRVTQHLQREVQANSAGSLDD 184 Query: 188 XXXXXXXXLLHEAYALYRRQFDEEYGGFGNAPKFPSPHNLSFLLAYSQMYNQPEALRMVE 247 + YA +++FD+ YGGFG+APKFP+PHNL FLL ++ N EAL MVE Sbjct: 185 AS-------ILRGYAWLQKRFDDVYGGFGHAPKFPTPHNLLFLLRCDKLINAKEALPMVE 237 Query: 248 KTLESMYRGGMYDHVGYGFSRYSTDREWLVPHFEKMLYDNALLAIAYLEAYQITGKPLYA 307 KTL M+ GG+YDH+GYGFSRYSTD +WLVPHFEKMLYDNA LA+AYLEAYQ+T K YA Sbjct: 238 KTLRQMHAGGIYDHLGYGFSRYSTDEKWLVPHFEKMLYDNAQLAMAYLEAYQVTAKDEYA 297 Query: 308 EVAEQIFTYVQRDMTSPEGAFYSAEDADSEGVEGKFYVFTRQEIEEALGLEDMHSYCHVY 367 EVA +IF+YV RDM +PEG FYSAEDADSEGVEGKFY++T QE++E LG E +C Y Sbjct: 298 EVAREIFSYVLRDMHAPEGGFYSAEDADSEGVEGKFYLWTPQEVKEILGEETGKLFCQWY 357 Query: 368 GITPEGNFEGANIPNLLQG 386 IT +GNFEG NI N + Sbjct: 358 DITEKGNFEGQNILNRIDA 376 >Q896N6.1 Q896N6_CLOTE Thymidylate kinase EC=2.7.4.9 Length = 713 Score = 470 bits (1209), Expect = e-130, Method: Compositional matrix adjust. Identities = 215/387 (55%), Positives = 277/387 (71%), Gaps = 7/387 (1%) Query: 5 LVTTHKTPNRLVNEKSPYLLQHAHNPVDWYPWGXXXXXXXXXXXXPIFLSVGYSTCHWCH 64 + +++ PNRL EKSPYLLQHA+NPVDWYPWG PIFLS+GYSTCHWCH Sbjct: 37 MTNSNRVPNRLAQEKSPYLLQHAYNPVDWYPWGEEAFQKAKEEDKPIFLSIGYSTCHWCH 96 Query: 65 VMERESFEDQEVAKLLNEHYVAIKVDREERPDIDALYMSVCQALTGSGGWPLTVLLTPEK 124 VMERESFED+EVAK+LN+++++IKVDREERPDID +YM+ CQA+TGSGGWPLT+++TP+K Sbjct: 97 VMERESFEDEEVAKVLNDNFISIKVDREERPDIDNIYMTFCQAVTGSGGWPLTIIMTPDK 156 Query: 125 KPFYAGTYFPKRQMFGRIGLMDVLEQIHRKWEQXXXXXXXXXXXXXXXXQSLDRKNXXXX 184 KPF+AGTYFPK +G GLM +L+++ +W+ + L + Sbjct: 157 KPFFAGTYFPKEDRYGVRGLMYILKEMSNQWKN-------NRELILNSSEKLLKDMSQYI 209 Query: 185 XXXXXXXXXXXLLHEAYALYRRQFDEEYGGFGNAPKFPSPHNLSFLLAYSQMYNQPEALR 244 ++ E + + + +D +GGF +APKFP+ H L FLL Y ++Y EAL Sbjct: 210 SVSQREDLNKEVIKECFEVLKESYDPIHGGFYDAPKFPTSHKLMFLLRYYRLYKDEEALN 269 Query: 245 MVEKTLESMYRGGMYDHVGYGFSRYSTDREWLVPHFEKMLYDNALLAIAYLEAYQITGKP 304 +VEKTL+SMY+GG++DH+GYGFSRYSTD +WLVPHFEKMLYDNA+L IAY E YQIT + Sbjct: 270 IVEKTLKSMYKGGIFDHIGYGFSRYSTDDKWLVPHFEKMLYDNAMLTIAYAEMYQITKEE 329 Query: 305 LYAEVAEQIFTYVQRDMTSPEGAFYSAEDADSEGVEGKFYVFTRQEIEEALGLEDMHSYC 364 LY E+ E+ +YV RDM +GAFYSAEDADSEGVEGKFYV+T +EIE+ LG ED + Sbjct: 330 LYKEIIEKTISYVIRDMKDKKGAFYSAEDADSEGVEGKFYVWTLEEIEDILGKEDAKLFS 389 Query: 365 HVYGITPEGNFEGANIPNLLQGLPDDM 391 YGIT GNFEG NIPNL++ +D+ Sbjct: 390 KYYGITDRGNFEGENIPNLIETPLEDL 416 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,500,151,585 Number of extensions: 100496011 Number of successful extensions: 181024 Number of sequences better than 1.0e-05: 481 Number of HSP's gapped: 180334 Number of HSP's successfully gapped: 853 Length of query: 437 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 298 Effective length of database: 1,751,175,118 Effective search space: 521850185164 Effective search space used: 521850185164 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)