BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0447.0013.p (279 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q3ABE1.1 Q3ABE1_CARHZ Putative uncharacterized protein 223 1e-56 A4J8F4.1 A4J8F4_DESRM Putative uncharacterized protein 221 5e-56 Q2RHX2.1 Q2RHX2_MOOTA Putative uncharacterized protein 214 9e-54 P37512.1 YYAL_BACSU Uncharacterized protein yyaL 202 3e-50 A0Q1G7.1 A0Q1G7_CLONN Thymidylate kinase 191 6e-47 >Q3ABE1.1 Q3ABE1_CARHZ Putative uncharacterized protein Length = 686 Score = 223 bits (569), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 124/274 (45%), Positives = 169/274 (61%), Gaps = 3/274 (1%) Query: 1 VLTSWNGLMIXXXXXXXXXXQKPEYXXXXXXXXDFIWHKLRRREDGRLLARYRDGDAAIP 60 +LTSWNGLMI Q E +FI+ KLRR DGRL+ARYR+G+AA+ Sbjct: 413 ILTSWNGLMIAALAKGARVLQDQELLNMAHNAAEFIFSKLRR-ADGRLIARYREGEAAVL 471 Query: 61 AYLDDYTFLLWGLTELYEATGQAVHLERALTLKDGLLELFADQERGGFFFTGHDGEELPI 120 AYLDDY FL+WGL ELYEA+ + +L+ A+ L +L+LF D++ GG FFTG DGEEL Sbjct: 472 AYLDDYAFLIWGLIELYEASFEVWYLKLAVELTREMLKLFWDEKHGGLFFTGADGEELIT 531 Query: 121 RSKELYDGALPSGNSVAAKLLWKLSVMTQDVELKTXXXXXXXXXXXXXSEYPPGYAMYLQ 180 R KE+YDGALPSGNSVAA L +LS M + + SE P ++ YL Sbjct: 532 RPKEIYDGALPSGNSVAALNLLRLSRMLGEEDFLQKAVEILSTFAGKVSEIPSAHSFYLL 591 Query: 181 AHLAMASGGREWVLSGKREDSALHGMLAQVQQAYLPDAALLVNWEGDA-EGILRLLPHLA 239 A+L +E V++G+ + M+ ++ AYLP++ +L + GDA + I ++PH+A Sbjct: 592 AYLFYLGPVKEIVVAGEPDGEDTRAMIEKINLAYLPNSVVLFHPIGDAGQEIREIIPHIA 651 Query: 240 DKPALNGE-ATAYVCRNFACRAPVTSMEAVRELL 272 DK +L GE AT YVC NF+C+APV +E + E L Sbjct: 652 DKKSLIGERATVYVCENFSCKAPVVEVEMLEEYL 685 >A4J8F4.1 A4J8F4_DESRM Putative uncharacterized protein Length = 690 Score = 221 bits (564), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 113/273 (41%), Positives = 169/273 (61%), Gaps = 2/273 (0%) Query: 1 VLTSWNGLMIXXXXXXXXXXQKPEYXXXXXXXXDFIWHKLRRREDGRLLARYRDGDAAIP 60 +LT+WNGLMI Q Y FI+ +L+R DGRLLARYR+ +AA P Sbjct: 417 ILTAWNGLMIAALARGAQVFQSKRYLEAASNAMGFIFDRLQRN-DGRLLARYREYEAAYP 475 Query: 61 AYLDDYTFLLWGLTELYEATGQAVHLERALTLKDGLLELFADQERGGFFFTGHDGEELPI 120 AYLDDY F++WGL ELY+AT + HL+ A+ L D +++LF D ++GGF+F G D E+L Sbjct: 476 AYLDDYAFVIWGLLELYQATFEPRHLQNAVYLTDDMIDLFYDDKQGGFYFYGKDSEQLIS 535 Query: 121 RSKELYDGALPSGNSVAAKLLWKLSVMTQDVELKTXXXXXXXXXXXXXSEYPPGYAMYLQ 180 R K++YDGA+PSGNSVA L+KL+ +T + + + YP GY+ ++ Sbjct: 536 RPKDIYDGAIPSGNSVATVNLFKLARLTGNSRYEELANQQLQVFADELARYPAGYSFFMM 595 Query: 181 AHLAMASGGREWVLSGKREDSALHGMLAQVQQAYLPDAALLVNWEGD-AEGILRLLPHLA 239 E V++G +ED +L M+ ++Q +LP+A++LV ++ + A LLP L Sbjct: 596 GAYLQQEPPMEIVIAGTKEDPSLQQMINTLRQNFLPNASVLVRYDDEFANKWSPLLPLLK 655 Query: 240 DKPALNGEATAYVCRNFACRAPVTSMEAVRELL 272 DK +NG+A AYVC+N AC+AP+T EA+++++ Sbjct: 656 DKTPVNGKAAAYVCQNLACQAPLTEPEALQKMI 688 >Q2RHX2.1 Q2RHX2_MOOTA Putative uncharacterized protein Length = 752 Score = 214 bits (544), Expect = 9e-54, Method: Compositional matrix adjust. Identities = 126/280 (45%), Positives = 164/280 (58%), Gaps = 3/280 (1%) Query: 1 VLTSWNGLMIXXXXXXXXXXQKPEYXXXXXXXXDFIWHKLRRREDGRLLARYRDGDAAIP 60 +LT+WNGLMI +P Y FI LR E GRL ARYR+G AA P Sbjct: 466 ILTAWNGLMIAALARGAWVLDEPAYAAAAARAARFILTHLRDAE-GRLQARYREGQAAFP 524 Query: 61 AYLDDYTFLLWGLTELYEATGQAVHLERALTLKDGLLELFADQERGGFFFTGHDGEELPI 120 AYLDDY FL WGL ELY+AT + +L AL L + ELF D E GG+FFT H ELP+ Sbjct: 525 AYLDDYAFLTWGLIELYQATFETGYLREALALTRQMQELFRD-EGGGYFFTPHGAGELPV 583 Query: 121 RSKELYDGALPSGNSVAAKLLWKLSVMTQDVELKTXXXXXXXXXXXXXSEYPPGYAMYLQ 180 R +E+YDGA+PSGNSVAA L +L+ +T D L+ +EYP GY+ YL Sbjct: 584 RPREVYDGAIPSGNSVAALNLLRLARITGDSRLEEEAAAQVRALAGTVAEYPRGYSFYLC 643 Query: 181 AHLAMASGGREWVLSGKREDSALHGMLAQVQQAYLPDAALLVNWEG-DAEGILRLLPHLA 239 A E VL+G+RE +L ++ AYLP A L++ G + E + RL+P+ A Sbjct: 644 ALDFYLGPVTEIVLAGERETEDTRALLRVLRAAYLPSAVLVLRPGGREGEEVTRLIPYTA 703 Query: 240 DKPALNGEATAYVCRNFACRAPVTSMEAVRELLATGHREV 279 + +NG+AT Y+CRNFACRAPVT+ + + LA+ RE Sbjct: 704 GQKPVNGKATLYLCRNFACRAPVTTAGELEQWLASAGREA 743 >P37512.1 YYAL_BACSU Uncharacterized protein yyaL Length = 689 Score = 202 bits (513), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 107/275 (38%), Positives = 159/275 (57%), Gaps = 5/275 (1%) Query: 1 VLTSWNGLMIXXXXXXXXXXQKPEYXXXXXXXXDFIWHKLRRREDGRLLARYRDGDAAIP 60 VLTSWN LMI Q+P+Y FI +KL DGR++ RYRDG+ Sbjct: 417 VLTSWNALMIAGLAKAAKVYQEPKYLSLAKDAITFIENKLII--DGRVMVRYRDGEVKNK 474 Query: 61 AYLDDYTFLLWGLTELYEATGQAVHLERALTLKDGLLELFADQERGGFFFTGHDGEELPI 120 ++DDY FLLW +LYEA+ +L++A L D ++ LF D+E GGF+FTGHD E L + Sbjct: 475 GFIDDYAFLLWAYLDLYEASFDLSYLQKAKKLTDDMISLFWDEEHGGFYFTGHDAEALIV 534 Query: 121 RSKELYDGALPSGNSVAAKLLWKLSVMTQDVELKTXXXXXXXXXXXXXSEYPPGYAMYLQ 180 R KE+YDGA+PSGNSVAA L +L +T D+ L YP G+A ++Q Sbjct: 535 REKEVYDGAVPSGNSVAAVQLLRLGQVTGDLSLIEKAETMFSVFKPDIEAYPSGHAFFMQ 594 Query: 181 AHLAMASGGREWVLSGKREDSALHGMLAQVQQAYLPDAALLVNWEGDAEGILRLLPHLAD 240 + L +E V+ G +D A ++A++Q+A+ P+ ++LV + E + P AD Sbjct: 595 SVLRHLMPKKEIVIFGSADDPARKQIIAELQKAFKPNDSILVAEQ--PEQCKDIAPFAAD 652 Query: 241 KPALNGEATAYVCRNFACRAPVTSM-EAVRELLAT 274 ++G+ T Y+C NFAC+ P T++ EA+ L+++ Sbjct: 653 YRIIDGKTTVYICENFACQQPTTNIEEAIHTLISS 687 >A0Q1G7.1 A0Q1G7_CLONN Thymidylate kinase Length = 678 Score = 191 bits (485), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 103/272 (37%), Positives = 159/272 (58%), Gaps = 5/272 (1%) Query: 1 VLTSWNGLMIXXXXXXXXXXQKPEYXXXXXXXXDFIWHKLRRREDGRLLARYRDGDAAIP 60 +LT+WN LMI + EY DFI + L R+ DGRLLAR+R G+AA Sbjct: 411 ILTAWNALMISALAYGGRVFENKEYIKRAKDAYDFIKNNLIRK-DGRLLARFRYGEAAYI 469 Query: 61 AYLDDYTFLLWGLTELYEATGQAVHLERALTLKDGLLELFADQERGGFFFTGHDGEELPI 120 AYL+DY+FL+W L ELYEAT ++ L+ AL +D +++LF D++ GFF +G DGE+L + Sbjct: 470 AYLEDYSFLVWALIELYEATFESKFLKEALYFQDEMIKLFWDEKSYGFFHSGKDGEKLIL 529 Query: 121 RSKELYDGALPSGNSVAAKLLWKLSVMTQDVELKTXXXXXXXXXXXXXSEYPPGYAMYLQ 180 K+ YD A+PSGNSVAA L KLS +T L E ++++L Sbjct: 530 NLKDSYDTAIPSGNSVAAMNLIKLSKITGYNSLVEKAYKMIKGFGGNIKESLQSHSVFLM 589 Query: 181 AHLAMASGGREWVLSGKREDSALHGMLAQVQQAYLPDAALLVNWEGDAEGILRLLPHLAD 240 A++ R+ +++ +ED L+ M+ +V + ++P +L+N +G E I +P + + Sbjct: 590 AYMNYIRPSRQIIIASNKEDKVLNDMIREVNKKFMPFTTVLLN-DGTLEDI---IPSIKN 645 Query: 241 KPALNGEATAYVCRNFACRAPVTSMEAVRELL 272 + ++ + TAYVC NF+C PV ++E R+LL Sbjct: 646 EKIIDNKTTAYVCENFSCNRPVNNVEDFRKLL 677 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.137 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,600,822,675 Number of extensions: 62420918 Number of successful extensions: 112113 Number of sequences better than 1.0e-05: 339 Number of HSP's gapped: 111625 Number of HSP's successfully gapped: 339 Length of query: 279 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 145 Effective length of database: 1,798,280,193 Effective search space: 260750627985 Effective search space used: 260750627985 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 130 (54.7 bits)