BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0447.0009.p (254 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1D7L1.1 B1D7L1_9BACL Beta-lactamase domain protein 310 1e-82 C0Z7S0.1 C0Z7S0_BREBN Putative uncharacterized protein ytkL 265 2e-69 C3IXR2.1 C3IXR2_9BACI Beta-lactamase domain protein 247 7e-64 B7YAH2.1 B7YAH2_9BACI Beta-lactamase domain protein 247 7e-64 B4BPP7.1 B4BPP7_9BACI Beta-lactamase domain protein 245 3e-63 >B1D7L1.1 B1D7L1_9BACL Beta-lactamase domain protein Length = 230 Score = 310 bits (793), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 142/227 (62%), Positives = 183/227 (80%) Query: 28 IIYHGHSCIQIEVSGKSLIIDPFLRGNPAAVTKPEEVKTDMVLLTHAHVDHILDAAPIAL 87 II+HGHSC+QI SL+IDPFLRGN AVTKPE++K + VLLTHAH+DHILDA PI+ Sbjct: 4 IIFHGHSCVQITSGDNSLVIDPFLRGNELAVTKPEDIKVNSVLLTHAHMDHILDAEPISR 63 Query: 88 QNNVPIVANVELAGYMEGQGVQTIGMNIGGTVDLGFAKATMIHAFHSSGITLEDGQKAIY 147 NN P+VANVELA YM +G++TIGMNIGGTVDLGFAKA MI AFHSSGIT+ + Q+ IY Sbjct: 64 ANNAPVVANVELATYMSWKGLETIGMNIGGTVDLGFAKAKMIQAFHSSGITIAEEQRIIY 123 Query: 148 GGMPAGFIIQAEGRTVVHTGDTGLFGDLKMFGELYDIDLAILPIGGHYTMGPEHALIAAK 207 GGMP G+II +G+T++H GDT L+GD+KM G+ ++ID++++PIG H+TMGPE AL AA+ Sbjct: 124 GGMPGGYIITVDGKTILHAGDTALYGDMKMIGDRHNIDVSLIPIGDHFTMGPEDALQAAE 183 Query: 208 WLGAKQVLPIHYNTFPPIVQDANAFVRALGEEGIRGTVLGYGESLEL 254 W GAK +P+HYN+FP I QDA AFV+AL +G++G +L G+ L + Sbjct: 184 WFGAKLTIPVHYNSFPIIRQDAEAFVQALEAKGLKGQLLEPGQKLSI 230 >C0Z7S0.1 C0Z7S0_BREBN Putative uncharacterized protein ytkL Length = 231 Score = 265 bits (678), Expect = 2e-69, Method: Compositional matrix adjust. Identities = 125/229 (54%), Positives = 164/229 (71%) Query: 26 MKIIYHGHSCIQIEVSGKSLIIDPFLRGNPAAVTKPEEVKTDMVLLTHAHVDHILDAAPI 85 + I +HGHS +Q+ G S++IDPF+ G+P A TK E+ +LLTH H+DHILDA + Sbjct: 2 LDIRFHGHSSVQVTSKGHSIMIDPFISGSPVAATKLEDFSVQYILLTHGHLDHILDAVEL 61 Query: 86 ALQNNVPIVANVELAGYMEGQGVQTIGMNIGGTVDLGFAKATMIHAFHSSGITLEDGQKA 145 A +N+ IVA ELA Y+ QGV+TI MN+GG++ L F K M AFHSSG+ L+D ++ Sbjct: 62 AKKNDATIVATHELATYLSWQGVKTISMNLGGSIKLPFGKVKMTQAFHSSGVVLDDEKQI 121 Query: 146 IYGGMPAGFIIQAEGRTVVHTGDTGLFGDLKMFGELYDIDLAILPIGGHYTMGPEHALIA 205 +Y GMP GF+I+ G+T+ H GDTGLFGD+K+ GE +DIDLA LPIG +TMGPE AL+A Sbjct: 122 VYMGMPGGFVIELGGKTIYHAGDTGLFGDMKLIGERHDIDLAFLPIGDVFTMGPEDALVA 181 Query: 206 AKWLGAKQVLPIHYNTFPPIVQDANAFVRALGEEGIRGTVLGYGESLEL 254 A+W+ A V+PIHY+TFPPI QD AFV L E+ IRG L GE+L L Sbjct: 182 AEWVQADFVVPIHYDTFPPIKQDGEAFVAELAEKDIRGKALKPGETLRL 230 >C3IXR2.1 C3IXR2_9BACI Beta-lactamase domain protein Length = 241 Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 123/235 (52%), Positives = 157/235 (66%), Gaps = 3/235 (1%) Query: 20 DKERYPMKIIYHGHSCIQIEVSGKSLIIDPFLRGNPAAVTKPEEVKTDMVLLTHAHVDHI 79 ++ MKI YHGHS ++IE +GK+++IDPF+ GN +VK D++LLTH H DH+ Sbjct: 10 ERRDVTMKISYHGHSVVRIETNGKTILIDPFITGNTTTDLNAADVKADVILLTHGHGDHV 69 Query: 80 LDAAPIALQNNVPIVANVELAGYMEGQGVQTIGMNIGGTVDLGFAKATMIHAFHSSGITL 139 D IA +NN +VA ELA Y+ QGV+T GMNIGG + F AFHSSG Sbjct: 70 GDTVEIAKRNNALVVATFELATYLSWQGVETFGMNIGGAREFDFGTVKFTQAFHSSGFVT 129 Query: 140 EDGQKAIYGGMPAGFIIQAEGRTVVHTGDTGLFGDLKMFGELYDIDLAILPIGGHYTMGP 199 +D Q IY GMP G + AEG+T+ H GDTGLF D+K+ GE ++ID+A LPIG +TMGP Sbjct: 130 DDKQ-IIYLGMPTGILFTAEGKTIYHAGDTGLFSDMKLIGERHNIDVAFLPIGDSFTMGP 188 Query: 200 EHALIAAKWLGAKQVLPIHYNTFPPIVQDANAFVRALGEEGIRGTVLGYGESLEL 254 E A +AA+WLGAK V+PIHYNTFPPI QD FV L +G+ G L GES+EL Sbjct: 189 EDAAVAAEWLGAKLVVPIHYNTFPPITQDPERFVSLL-PQGV-GRALKPGESIEL 241 >B7YAH2.1 B7YAH2_9BACI Beta-lactamase domain protein Length = 241 Score = 247 bits (630), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 123/235 (52%), Positives = 157/235 (66%), Gaps = 3/235 (1%) Query: 20 DKERYPMKIIYHGHSCIQIEVSGKSLIIDPFLRGNPAAVTKPEEVKTDMVLLTHAHVDHI 79 ++ MKI YHGHS ++IE +GK+++IDPF+ GN +VK D++LLTH H DH+ Sbjct: 10 ERRDVTMKISYHGHSVVRIETNGKTILIDPFITGNTTTDLNAADVKADVILLTHGHGDHV 69 Query: 80 LDAAPIALQNNVPIVANVELAGYMEGQGVQTIGMNIGGTVDLGFAKATMIHAFHSSGITL 139 D IA +NN +VA ELA Y+ QGV+T GMNIGG + F AFHSSG Sbjct: 70 GDTVEIAKRNNALVVATFELATYLSWQGVETFGMNIGGAREFDFGTVKFTQAFHSSGFVT 129 Query: 140 EDGQKAIYGGMPAGFIIQAEGRTVVHTGDTGLFGDLKMFGELYDIDLAILPIGGHYTMGP 199 +D Q IY GMP G + AEG+T+ H GDTGLF D+K+ GE ++ID+A LPIG +TMGP Sbjct: 130 DDKQ-IIYLGMPTGILFTAEGKTIYHAGDTGLFSDMKLIGERHNIDVAFLPIGDSFTMGP 188 Query: 200 EHALIAAKWLGAKQVLPIHYNTFPPIVQDANAFVRALGEEGIRGTVLGYGESLEL 254 E A +AA+WLGAK V+PIHYNTFPPI QD FV L +G+ G L GES+EL Sbjct: 189 EDAAVAAEWLGAKLVVPIHYNTFPPITQDPERFVSLL-PQGV-GRALKPGESIEL 241 >B4BPP7.1 B4BPP7_9BACI Beta-lactamase domain protein Length = 226 Score = 245 bits (625), Expect = 3e-63, Method: Compositional matrix adjust. Identities = 124/229 (54%), Positives = 153/229 (66%), Gaps = 3/229 (1%) Query: 26 MKIIYHGHSCIQIEVSGKSLIIDPFLRGNPAAVTKPEEVKTDMVLLTHAHVDHILDAAPI 85 MKI YHGHS ++IE +GK+++IDPF+ GN +VK D++LLTH H DH+ D I Sbjct: 1 MKISYHGHSVVRIETNGKTILIDPFITGNTTTDLNAADVKADVILLTHGHGDHVGDTVEI 60 Query: 86 ALQNNVPIVANVELAGYMEGQGVQTIGMNIGGTVDLGFAKATMIHAFHSSGITLEDGQKA 145 A +NN +VA ELA Y+ QGV+T GMNIGG + F AFHSSG ED Q Sbjct: 61 AKRNNALVVATFELATYLSWQGVETFGMNIGGAREFDFGTVKFTQAFHSSGFVTEDKQ-I 119 Query: 146 IYGGMPAGFIIQAEGRTVVHTGDTGLFGDLKMFGELYDIDLAILPIGGHYTMGPEHALIA 205 IY GMP G + AEG+T+ H GDTGLF D+K+ GE + ID+A LPIG +TMGPE A +A Sbjct: 120 IYLGMPTGILFTAEGKTIYHAGDTGLFSDMKLIGERHSIDVAFLPIGDSFTMGPEDAAVA 179 Query: 206 AKWLGAKQVLPIHYNTFPPIVQDANAFVRALGEEGIRGTVLGYGESLEL 254 A+WLGAK V+PIHYNTFPPI QD FV L G+ G L GES+EL Sbjct: 180 AEWLGAKLVVPIHYNTFPPIAQDPQQFVSLL-PPGV-GRALQPGESIEL 226 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.141 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,613,572,579 Number of extensions: 70165360 Number of successful extensions: 163638 Number of sequences better than 1.0e-05: 749 Number of HSP's gapped: 162598 Number of HSP's successfully gapped: 749 Length of query: 254 Length of database: 3,060,696,203 Length adjustment: 133 Effective length of query: 121 Effective length of database: 1,807,701,208 Effective search space: 218731846168 Effective search space used: 218731846168 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 129 (54.3 bits)