BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0447.0007.p
         (153 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q65J92.1 Q65J92_BACLD Putative uncharacterized protein                111   2e-23
Q5WHL0.1 Q5WHL0_BACSK Putative uncharacterized protein                111   2e-23

>Q65J92.1 Q65J92_BACLD Putative uncharacterized protein
          Length = 207

 Score =  111 bits (278), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 56/140 (40%), Positives = 85/140 (60%), Gaps = 1/140 (0%)

Query: 4   IGQGYRSHSGTVEDMVTASELLLTSLFRFAGSNRYFME-LLYAGAGNDEVIRSAVNETRN 62
           I QGYR      +DM+ ++  L+  +F FA  NR  M  LL  G G D  IR A+ E   
Sbjct: 68  IHQGYRQTFALADDMIQSTTALMKRIFTFAQENRNLMTFLLVKGQGADPEIREAIEEALI 127

Query: 63  EMERAFRRNIERAVELQMLPANIDSSLRAMLLVSLIEGVISRWLFGPREAESELSRKTAE 122
            +E+AF++NI+RA EL ML ++ ++ L+A +L SL+ G +S+WLFGP+   + + + + +
Sbjct: 128 SVEQAFKKNIQRATELGMLNSSHNTDLQATMLTSLVLGTLSKWLFGPKHDLNYVPKFSVD 187

Query: 123 ELAAETARFEFFGLLGTTKN 142
           E+  E   FEFFGL+G   N
Sbjct: 188 EMTEELVHFEFFGLIGQRGN 207


>Q5WHL0.1 Q5WHL0_BACSK Putative uncharacterized protein
          Length = 203

 Score =  111 bits (277), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 65/142 (45%), Positives = 82/142 (57%), Gaps = 4/142 (2%)

Query: 1   VKVIGQGYRSHSGTVEDMVTASELLLTSLFRFAGSNRYFMELLY-AGAGNDEVIRSAVNE 59
           + VI  GYR   G V+DMV +S  L+T LF FA +N  +M LL+  G   +E I   ++ 
Sbjct: 65  LNVIRSGYRQTEGNVDDMVESSRRLMTDLFSFAQANPDYMRLLFKTGQDAEEKICRHISH 124

Query: 60  TRNEMERAFRRNIERAVELQMLPANIDSSLRAMLLVSLIEGVISRWLFGPREAESELSRK 119
           T   +E AF RNI+RA EL+MLP +  S   A +LVSL+ G + RWLF        L   
Sbjct: 125 TLIAIEEAFERNIKRAQELEMLPKDSSSKRLAAMLVSLVLGTLERWLFSE---SPHLDNI 181

Query: 120 TAEELAAETARFEFFGLLGTTK 141
            AE LA E   FEFFGLLG TK
Sbjct: 182 AAESLAVEIVSFEFFGLLGKTK 203


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.316    0.132    0.355 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 777,080,370
Number of extensions: 25924270
Number of successful extensions: 75272
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 75270
Number of HSP's successfully gapped: 2
Length of query: 153
Length of database: 3,060,696,203
Length adjustment: 115
Effective length of query: 38
Effective length of database: 1,977,279,478
Effective search space: 75136620164
Effective search space used: 75136620164
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 125 (52.8 bits)