BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0447.0006.p
         (93 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q65J91.1 Q65J91_BACLD Putative uncharacterized protein                 70   6e-11
B3K3R5.1 B3K3R5_9BACI OsmC family protein                              54   6e-06

>Q65J91.1 Q65J91_BACLD Putative uncharacterized protein
          Length = 128

 Score = 70.1 bits (170), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 39/86 (45%), Positives = 53/86 (61%), Gaps = 2/86 (2%)

Query: 1   MDILCESLGMCIAVSLVRLMGDAGLD--SNLLTVEVVPHKAHGGAPRVENMNVSVIFPGA 58
           +++L  SLGMCI +SL ++    G++   +  +V V   KA  G  RVE  +VSV  P  
Sbjct: 35  IELLEASLGMCITISLQKMFERDGIEVLEDEFSVSVSAAKAPEGPSRVEKCSVSVKLPEH 94

Query: 59  LSTEIKEKLLLQASRVCTIGNTLKRG 84
           L T+ K+KL+  A R CTIGNTLKRG
Sbjct: 95  LPTDYKKKLITSAERACTIGNTLKRG 120


>B3K3R5.1 B3K3R5_9BACI OsmC family protein
          Length = 139

 Score = 53.5 bits (127), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 31/83 (37%), Positives = 46/83 (55%), Gaps = 2/83 (2%)

Query: 2   DILCESLGMCIAVSLVRLMGDAGL--DSNLLTVEVVPHKAHGGAPRVENMNVSVIFPGAL 59
           ++L  SL +C+++SL ++M   G+  D + + +EV   KA   + +  + NV V  P  L
Sbjct: 37  ELLEASLALCVSISLQKIMAYDGVEYDKSSIHIEVSSVKAEDKSNKFSHFNVLVSLPPTL 96

Query: 60  STEIKEKLLLQASRVCTIGNTLK 82
               KEKL     R CTIGNTLK
Sbjct: 97  EPAYKEKLKSVVERACTIGNTLK 119


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.136    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 512,127,053
Number of extensions: 16904653
Number of successful extensions: 36494
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 36496
Number of HSP's successfully gapped: 2
Length of query: 93
Length of database: 3,060,696,203
Length adjustment: 62
Effective length of query: 31
Effective length of database: 2,476,593,273
Effective search space: 76774391463
Effective search space used: 76774391463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)