BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0447.0003.p (208 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65J89.1 Q65J89_BACLD Putative uncharacterized protein 242 1e-62 A5A672.1 A5A672_BACLD Hydantoin utilization protein A 242 1e-62 Q5KVV7.1 Q5KVV7_GEOKA N-methylhydantoinase A EC=3.5.2.14 97 6e-19 C0U7H3.1 C0U7H3_9ACTO N-methylhydantoinase A/acetone carboxylase... 94 5e-18 C1SPY1.1 C1SPY1_9DELT N-methylhydantoinase A/acetone carboxylase... 92 3e-17 >Q65J89.1 Q65J89_BACLD Putative uncharacterized protein Length = 701 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 117/208 (56%), Positives = 156/208 (75%), Gaps = 1/208 (0%) Query: 1 VIANLKVTELRTFYGNSKELQLADINQRFEQMERSAKEKLGESGKLNLNMEVRKYADMRY 60 V ANLKVTELRT + + K + L +N FE+ME++A+EKLG N E R++ DMRY Sbjct: 490 VAANLKVTELRTRFESLKNVDLQAMNADFEKMEQTAREKLGGQSVTN-QYETRRFIDMRY 548 Query: 61 EGEVHEVTVPIRTRTRKITELNMEAAFGQFHELHERLYAHKNIGQEIELLNLRLDLIGVR 120 GEVHEVTVP+++RTR+ITELN+EA FH+LHER++AHK+ +IE+LNLRLDL+GVR Sbjct: 549 AGEVHEVTVPVKSRTRRITELNLEATAADFHDLHERMFAHKDPEHDIEILNLRLDLVGVR 608 Query: 121 DRIQLQEGQFSEEDPGAAQISSRPVYFGQQADETKIYDSSLLVPGNLIVGPAIIEHWGST 180 + ++L+E QF +EDP A+ R +YF + +T I++ S+L PGNLIVGPAIIE WG+T Sbjct: 609 EPLKLKEEQFEQEDPSKAKTGERDMYFDIEPAKTPIFNGSMLEPGNLIVGPAIIEQWGTT 668 Query: 181 IVVYPGDEALIDPGGNCIIEVRKEKEAV 208 IVVYPG EALID NC+IEV+ ++A Sbjct: 669 IVVYPGHEALIDSYRNCVIEVKHAQQAT 696 >A5A672.1 A5A672_BACLD Hydantoin utilization protein A Length = 700 Score = 242 bits (618), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 117/208 (56%), Positives = 156/208 (75%), Gaps = 1/208 (0%) Query: 1 VIANLKVTELRTFYGNSKELQLADINQRFEQMERSAKEKLGESGKLNLNMEVRKYADMRY 60 V ANLKVTELRT + + K + L +N FE+ME++A+EKLG N E R++ DMRY Sbjct: 489 VAANLKVTELRTRFESLKNVDLQAMNADFEKMEQTAREKLGGQSVTN-QYETRRFIDMRY 547 Query: 61 EGEVHEVTVPIRTRTRKITELNMEAAFGQFHELHERLYAHKNIGQEIELLNLRLDLIGVR 120 GEVHEVTVP+++RTR+ITELN+EA FH+LHER++AHK+ +IE+LNLRLDL+GVR Sbjct: 548 AGEVHEVTVPVKSRTRRITELNLEATAADFHDLHERMFAHKDPEHDIEILNLRLDLVGVR 607 Query: 121 DRIQLQEGQFSEEDPGAAQISSRPVYFGQQADETKIYDSSLLVPGNLIVGPAIIEHWGST 180 + ++L+E QF +EDP A+ R +YF + +T I++ S+L PGNLIVGPAIIE WG+T Sbjct: 608 EPLKLKEEQFEQEDPSKAKTGERDMYFDIEPAKTPIFNGSMLEPGNLIVGPAIIEQWGTT 667 Query: 181 IVVYPGDEALIDPGGNCIIEVRKEKEAV 208 IVVYPG EALID NC+IEV+ ++A Sbjct: 668 IVVYPGHEALIDSYRNCVIEVKHAQQAT 695 >Q5KVV7.1 Q5KVV7_GEOKA N-methylhydantoinase A EC=3.5.2.14 Length = 680 Score = 97.4 bits (241), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 61/200 (30%), Positives = 105/200 (52%), Gaps = 3/200 (1%) Query: 1 VIANLKVTELRTFYGNSKELQLADINQRFEQMERSAKEKLGESGKLNLNMEVRKYADMRY 60 ++ +L+ ++T+ EL L ++N+ ++Q+E +A ++ + G + +YADMRY Sbjct: 479 LMTDLRHDYIQTYIRRVSELNLDELNREWDQLETAALQQYSQEGISEDKVLFARYADMRY 538 Query: 61 EGEVHEVTVPIRTRTRKITELNMEAAFGQFHELHERLYAHKNIGQEIELLNLRLDLIGVR 120 G+ H V VP+ + E ++ +FH +HE+ Y K G E++NL L GV Sbjct: 539 VGQEHAVKVPVPNGV--MDEEAVKEMVSRFHHIHEKHYTFKLDGAPTEIVNLHLTAFGVV 596 Query: 121 DRIQLQEGQFSEEDPGAAQISSRPVYFGQQA-DETKIYDSSLLVPGNLIVGPAIIEHWGS 179 + ++ + ++ A RPV F +T +YD +L G++I GPAI+E + Sbjct: 597 QKPEIARLEKVGDNAEEALKEVRPVLFEDHGWIDTNVYDRGILNAGSVIHGPAIVEESST 656 Query: 180 TIVVYPGDEALIDPGGNCII 199 + VVYPG +D GN II Sbjct: 657 STVVYPGQTLEVDEYGNLII 676 >C0U7H3.1 C0U7H3_9ACTO N-methylhydantoinase A/acetone carboxylase, beta subunit Length = 690 Score = 94.4 bits (233), Expect = 5e-18, Method: Composition-based stats. Identities = 66/203 (32%), Positives = 99/203 (48%), Gaps = 10/203 (4%) Query: 4 NLKVTELRTFYGNSKELQLADINQRFEQMERSAKEKLGESGKLNLNMEVRKYADMRYEGE 63 +++ ++T +L L + F +E A+ L G V++ AD+RY G+ Sbjct: 489 DVRNDHVQTAISRHADLDLDRVRSVFASLEDDARAALDGEGFPRDRQRVQRSADLRYVGQ 548 Query: 64 VHEVTVPIRTRTRKITELNMEAAFGQFHELHERLYAH---KNIGQEIELLNLRLDLIGVR 120 EV VP+ + ++ A FH H LY + ++ Q +E +NLR+ IG Sbjct: 549 AFEVRVPVADG--DLDAAAVDQACQGFHAAHRMLYGYDFAEDPRQAVEWVNLRVSGIGPI 606 Query: 121 DRIQLQEGQFSEED---PGAAQISSRPVYFGQQADETKIYDSSLLVPGNLIVGPAIIEHW 177 R L E S D A SRPV+F ET YD L PG+++ GPA+IE + Sbjct: 607 RRPDLVE--LSPADGPVTDRAVTGSRPVFFDDDWVETPTYDRPRLAPGDVVPGPAVIEEF 664 Query: 178 GSTIVVYPGDEALIDPGGNCIIE 200 GST+ V+PG A +D GN +IE Sbjct: 665 GSTVPVHPGFRATVDRHGNLLIE 687 >C1SPY1.1 C1SPY1_9DELT N-methylhydantoinase A/acetone carboxylase, beta subunit Length = 657 Score = 92.0 bits (227), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 55/181 (30%), Positives = 94/181 (51%), Gaps = 12/181 (6%) Query: 24 DINQRFEQMERSAKEKLGESGKLNLNMEVRKYADMRYEGEVHEVTVPIRTRTRKITELNM 83 D+ F +E+ A ++ + G ++ + ++ DMRY+G+ E+ VP Sbjct: 488 DVENAFAPLEQQAATEMADEGFAGASLYLERFVDMRYQGQSFEIIVPFD----------- 536 Query: 84 EAAFGQFHELHERLYAHKNIGQEIELLNLRLDLIGVRDR-IQLQEGQFSEEDPGAAQISS 142 EA +F ++HE+ Y + + G+ E++NLRL GV ++ + + SE P A + + Sbjct: 537 EAFLERFGQMHEQKYGYCHPGKPTEIVNLRLRARGVPEKPVFSATTELSERIPEEAWLDT 596 Query: 143 RPVYFGQQADETKIYDSSLLVPGNLIVGPAIIEHWGSTIVVYPGDEALIDPGGNCIIEVR 202 V F Q+ +T + L+PGN GPAI+ + STIVV P A +DP GN ++ +R Sbjct: 597 LDVVFEGQSRQTWVVQRDRLLPGNRFEGPAIVVEYTSTIVVPPFACAEVDPFGNLLLHIR 656 Query: 203 K 203 Sbjct: 657 S 657 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.136 0.381 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,201,198,778 Number of extensions: 48499675 Number of successful extensions: 128861 Number of sequences better than 1.0e-05: 255 Number of HSP's gapped: 128640 Number of HSP's successfully gapped: 255 Length of query: 208 Length of database: 3,060,696,203 Length adjustment: 130 Effective length of query: 78 Effective length of database: 1,835,964,253 Effective search space: 143205211734 Effective search space used: 143205211734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)