BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0033.p (241 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4AL29.1 B4AL29_BACPU Conserved membrane protein YetF 190 1e-46 Q65IS6.1 Q65IS6_BACLD YetF 190 1e-46 B7IRD3.1 B7IRD3_BACC2 Putative uncharacterized protein 189 2e-46 Q3ETY9.1 Q3ETY9_BACTI Hypothetical membrane associated protein 189 2e-46 C3IHY2.1 C3IHY2_BACTU Putative uncharacterized protein 189 2e-46 >B4AL29.1 B4AL29_BACPU Conserved membrane protein YetF Length = 246 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 90/220 (40%), Positives = 148/220 (67%), Gaps = 1/220 (0%) Query: 10 YVSVLVKLTAGFVGLWAMARLLGKKEISALTPFDFISAVILGDLVGNTIYEPDKSVLLLL 69 ++S+L++L GF L+++ +LLGK + + +TPFDFISA+ILG++VGN I++P+ + +L Sbjct: 18 FLSILIELFIGFFALFSITKLLGKTQFAQITPFDFISALILGEMVGNAIFDPEVKIQHIL 77 Query: 70 FALAVWTVLSIIFEKITQRVRKLRKPLEGEPEILIRDGKLDLTKLRKNNLDFEQLRMMLR 129 FA+AVW VL E +QR + +R LEG P ++I GK+ +L+KN LD QL+ ++R Sbjct: 78 FAVAVWGVLIYTVEWFSQRFKGIRAFLEGRPTLVIDQGKIHYKRLKKNMLDLNQLQTLIR 137 Query: 130 AKDTFSMNEVAYAIYETNGSLSILKKPQFEPATRKELDIKPQHTRLPRSLVEAGEVQRAA 189 AK F++NE+ YAI ET+GS+S+L K ++ AT +++++K + +LPR+ + GE+ + Sbjct: 138 AKGHFALNEIEYAILETDGSVSVLPKMKYATATAEDVNVKGKEVKLPRTFIIDGEILKKD 197 Query: 190 LASLGHDETWLRRKLQEEGCPNLDSVAYAE-INEEGKLAI 228 L G DETWL +L+++ + V + E I EG A+ Sbjct: 198 LQEAGFDETWLSEQLKKQHISSYRDVLFCEWIENEGIYAM 237 >Q65IS6.1 Q65IS6_BACLD YetF Length = 225 Score = 190 bits (482), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 92/222 (41%), Positives = 146/222 (65%), Gaps = 1/222 (0%) Query: 8 MDYVSVLVKLTAGFVGLWAMARLLGKKEISALTPFDFISAVILGDLVGNTIYEPDKSVLL 67 M+YV ++V+LT GF L+ M ++LGK + + +TPFDFISA+ILG++VGN I++ D ++ Sbjct: 1 MEYVHLVVELTIGFAALFLMTKILGKTQFAQITPFDFISALILGEMVGNAIFDEDVTIWK 60 Query: 68 LLFALAVWTVLSIIFEKITQRVRKLRKPLEGEPEILIRDGKLDLTKLRKNNLDFEQLRMM 127 +LFA+ +W VL E ++Q+V+ +R LEG P I+I GK+D L+KN LD QL+ + Sbjct: 61 ILFAILIWAVLIYSIEVLSQKVQNIRGFLEGRPSIVINKGKIDYNALKKNKLDLNQLQTL 120 Query: 128 LRAKDTFSMNEVAYAIYETNGSLSILKKPQFEPATRKELDIKPQHTRLPRSLVEAGEVQR 187 R K FS++E+ YAI ET+GS+S+L K ++ T+ +L+I + +LP ++ G++++ Sbjct: 121 AREKGCFSLHEIQYAILETDGSISVLPKHKYGMPTKDDLNIPYKPVQLPVPVILDGQLEK 180 Query: 188 AALASLGHDETWLRRKLQEEGCPNLDSVAYAEI-NEEGKLAI 228 L G DE WL+ +L +G V YAE +EG+L I Sbjct: 181 NNLHEAGFDELWLQNQLSSQGITQYQEVLYAEWRGDEGQLYI 222 >B7IRD3.1 B7IRD3_BACC2 Putative uncharacterized protein Length = 228 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 95/209 (45%), Positives = 137/209 (65%), Gaps = 1/209 (0%) Query: 12 SVLVKLTAGFVGLWAMARLLGKKEISALTPFDFISAVILGDLVGNTIYEPDKSVLLLLFA 71 + ++L GF L ++LGK +IS LTPFDFISA++LG+LVGNTIY+P+ V +L+A Sbjct: 6 QITIELFVGFFVLLIATKILGKTQISQLTPFDFISAIVLGELVGNTIYDPEVKVWSILYA 65 Query: 72 LAVWTVLSIIFEKITQRVRKLRKPLEGEPEILIRDGKLDLTKLRKNNLDFEQLRMMLR-A 130 + VWTVL E ITQ+ R R+ EG P I+IR+G +D +L+ N+LD QL+ MLR Sbjct: 66 VLVWTVLIYAIEVITQKYRGTRRFFEGYPSIIIRNGYIDRDQLKSNHLDINQLQQMLRQQ 125 Query: 131 KDTFSMNEVAYAIYETNGSLSILKKPQFEPATRKELDIKPQHTRLPRSLVEAGEVQRAAL 190 KD FS+ EV Y I E NG++S+LKK ++E T +L +K + LP SL+ G+V + L Sbjct: 126 KDIFSIREVEYMILEPNGNISVLKKSKYESPTINDLSLKHKPVYLPISLISDGKVVKDNL 185 Query: 191 ASLGHDETWLRRKLQEEGCPNLDSVAYAE 219 G DE WL ++++++G + V YAE Sbjct: 186 REAGFDEGWLYKQIKQKGITKFEDVLYAE 214 >Q3ETY9.1 Q3ETY9_BACTI Hypothetical membrane associated protein Length = 228 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 95/209 (45%), Positives = 137/209 (65%), Gaps = 1/209 (0%) Query: 12 SVLVKLTAGFVGLWAMARLLGKKEISALTPFDFISAVILGDLVGNTIYEPDKSVLLLLFA 71 + ++L GF L ++LGK +IS LTPFDFISA++LG+LVGNTIY+P+ V +L+A Sbjct: 6 QITIELFVGFFVLLIATKILGKTQISQLTPFDFISAIVLGELVGNTIYDPEVKVWSILYA 65 Query: 72 LAVWTVLSIIFEKITQRVRKLRKPLEGEPEILIRDGKLDLTKLRKNNLDFEQLRMMLR-A 130 + VWTVL E ITQ+ R R+ EG P I+IR+G +D +L+ N+LD QL+ MLR Sbjct: 66 VLVWTVLIYAIEVITQKYRGTRRFFEGYPSIIIRNGYIDRDQLKSNHLDINQLQQMLRQQ 125 Query: 131 KDTFSMNEVAYAIYETNGSLSILKKPQFEPATRKELDIKPQHTRLPRSLVEAGEVQRAAL 190 KD FS+ EV Y I E NG++S+LKK ++E T +L +K + LP SL+ G+V + L Sbjct: 126 KDIFSIREVEYMILEPNGNISVLKKSKYESPTINDLSLKHKPVYLPISLISDGKVVKDNL 185 Query: 191 ASLGHDETWLRRKLQEEGCPNLDSVAYAE 219 G DE WL ++++++G + V YAE Sbjct: 186 REAGFDEGWLYKQIKQKGITKFEDVLYAE 214 >C3IHY2.1 C3IHY2_BACTU Putative uncharacterized protein Length = 228 Score = 189 bits (480), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 95/209 (45%), Positives = 137/209 (65%), Gaps = 1/209 (0%) Query: 12 SVLVKLTAGFVGLWAMARLLGKKEISALTPFDFISAVILGDLVGNTIYEPDKSVLLLLFA 71 + ++L GF L ++LGK +IS LTPFDFISA++LG+LVGNTIY+P+ V +L+A Sbjct: 6 QITIELFVGFFVLLIATKILGKTQISQLTPFDFISAIVLGELVGNTIYDPEVKVWSILYA 65 Query: 72 LAVWTVLSIIFEKITQRVRKLRKPLEGEPEILIRDGKLDLTKLRKNNLDFEQLRMMLR-A 130 + VWTVL E ITQ+ R R+ EG P I+IR+G +D +L+ N+LD QL+ MLR Sbjct: 66 VLVWTVLIYAIEVITQKYRGTRRFFEGYPSIIIRNGYIDRDQLKSNHLDINQLQQMLRQQ 125 Query: 131 KDTFSMNEVAYAIYETNGSLSILKKPQFEPATRKELDIKPQHTRLPRSLVEAGEVQRAAL 190 KD FS+ EV Y I E NG++S+LKK ++E T +L +K + LP SL+ G+V + L Sbjct: 126 KDIFSIREVEYMILEPNGNISVLKKSKYESPTINDLSLKHKPVYLPISLISDGKVVKDNL 185 Query: 191 ASLGHDETWLRRKLQEEGCPNLDSVAYAE 219 G DE WL ++++++G + V YAE Sbjct: 186 REAGFDEGWLYKQIKQKGITKFEDVLYAE 214 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.136 0.384 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,391,370,115 Number of extensions: 54649267 Number of successful extensions: 149516 Number of sequences better than 1.0e-05: 907 Number of HSP's gapped: 149038 Number of HSP's successfully gapped: 907 Length of query: 241 Length of database: 3,060,696,203 Length adjustment: 132 Effective length of query: 109 Effective length of database: 1,817,122,223 Effective search space: 198066322307 Effective search space used: 198066322307 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 129 (54.3 bits)