BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0032.p (152 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B5V8G0.1 B5V8G0_BACCE Lipoprotein signal peptidase EC=3.4.23.36 87 5e-16 C2S7U8.1 C2S7U8_BACCE Lipoprotein signal peptidase 87 5e-16 C2MPM3.1 C2MPM3_BACCE Lipoprotein signal peptidase 87 5e-16 C1KWE3.1 C1KWE3_LISMC Putative signal peptidase II 86 1e-15 Q4EEM0.1 Q4EEM0_LISMO Lipoprotein signal peptidase EC=3.4.23.36 86 1e-15 >B5V8G0.1 B5V8G0_BACCE Lipoprotein signal peptidase EC=3.4.23.36 Length = 152 Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 3/146 (2%) Query: 1 MIFYVITILVIIADQAAKWGVRSNMQLGETVQVWSGHLQFTYYENSGAAFSSFQGYGKYF 60 MI+YVI + VI DQ +KW + NM+LG ++ + L T + N GAA+ + +F Sbjct: 1 MIYYVIALFVIAIDQISKWLIVKNMELGTSIPIIDNVLYITSHRNRGAAWGILENKMWFF 60 Query: 61 AIIAVLFVAGIFYYRRKGELRGPILEAATGFLAGGAIGNAIDRVIYHQVTDFL---VFGS 117 II V+FVA I +Y +K +L + G + GGAIGN IDRV +V DF+ +F Sbjct: 61 YIITVVFVAFIVFYMKKYAKTDKLLGISLGLILGGAIGNFIDRVFRQEVVDFIHVYIFSY 120 Query: 118 RGGILNLADLAINAGGLLVVVHLLKE 143 + N+AD A+ G +L+++ L E Sbjct: 121 NYPVFNIADSALCIGVVLIIIQTLLE 146 >C2S7U8.1 C2S7U8_BACCE Lipoprotein signal peptidase Length = 157 Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 3/146 (2%) Query: 1 MIFYVITILVIIADQAAKWGVRSNMQLGETVQVWSGHLQFTYYENSGAAFSSFQGYGKYF 60 MI+YVI + VI DQ +KW + NM+LG ++ + L T + N GAA+ + +F Sbjct: 6 MIYYVIALFVIAIDQISKWLIVKNMELGTSIPIIDNVLYITSHRNRGAAWGILENKMWFF 65 Query: 61 AIIAVLFVAGIFYYRRKGELRGPILEAATGFLAGGAIGNAIDRVIYHQVTDFL---VFGS 117 II V+FVA I +Y +K +L + G + GGAIGN IDRV +V DF+ +F Sbjct: 66 YIITVVFVAFIVFYMKKYAKTDKLLGISLGLILGGAIGNFIDRVFRQEVVDFIHVYIFSY 125 Query: 118 RGGILNLADLAINAGGLLVVVHLLKE 143 + N+AD A+ G +L+++ L E Sbjct: 126 NYPVFNIADSALCIGVVLIIIQTLLE 151 >C2MPM3.1 C2MPM3_BACCE Lipoprotein signal peptidase Length = 157 Score = 87.0 bits (214), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 55/146 (37%), Positives = 83/146 (56%), Gaps = 3/146 (2%) Query: 1 MIFYVITILVIIADQAAKWGVRSNMQLGETVQVWSGHLQFTYYENSGAAFSSFQGYGKYF 60 MI+YVI + VI DQ +KW + NM+LG ++ + L T + N GAA+ + +F Sbjct: 6 MIYYVIALFVIAIDQISKWLIVKNMELGTSIPIIDNVLYITSHRNRGAAWGILENKMWFF 65 Query: 61 AIIAVLFVAGIFYYRRKGELRGPILEAATGFLAGGAIGNAIDRVIYHQVTDFL---VFGS 117 II V+FVA I +Y +K +L + G + GGAIGN IDRV +V DF+ +F Sbjct: 66 YIITVVFVAFIVFYMKKYAKTDKLLGISLGLILGGAIGNFIDRVFRQEVVDFIHVYIFSY 125 Query: 118 RGGILNLADLAINAGGLLVVVHLLKE 143 + N+AD A+ G +L+++ L E Sbjct: 126 NYPVFNIADSALCIGVVLIIIQTLLE 151 >C1KWE3.1 C1KWE3_LISMC Putative signal peptidase II Length = 154 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 91/149 (61%), Gaps = 3/149 (2%) Query: 1 MIFYVITILVIIADQAAKWGVRSNMQLGETVQVWSGHLQFTYYENSGAAFSSFQGYGKYF 60 M +Y+IT+ VI DQ KW V NM++G+ ++V G L +T Y N GAA+S +G+ +F Sbjct: 1 MYYYLITLAVIALDQLTKWIVVQNMEIGQKIEVIPGFLYWTSYRNDGAAWSILEGHMWFF 60 Query: 61 AIIAVLFVAGIFYYRRKGELRGPILEAATGFLAGGAIGNAIDRVIYHQVTDFL--VFGSR 118 +I V+ + I Y +K + + F+ GGAIGN IDRV++ +V DF+ V+G+ Sbjct: 61 YLITVVVIGIIIYIMQKYAKGKRLFSISLAFILGGAIGNFIDRVLHQEVVDFVQTVWGNY 120 Query: 119 G-GILNLADLAINAGGLLVVVHLLKEPLK 146 I N+AD A++ G +L++V++ + K Sbjct: 121 YFPIFNVADAALSVGVVLMLVYVFVDDRK 149 >Q4EEM0.1 Q4EEM0_LISMO Lipoprotein signal peptidase EC=3.4.23.36 Length = 154 Score = 85.9 bits (211), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 56/149 (37%), Positives = 91/149 (61%), Gaps = 3/149 (2%) Query: 1 MIFYVITILVIIADQAAKWGVRSNMQLGETVQVWSGHLQFTYYENSGAAFSSFQGYGKYF 60 M +Y+IT+ VI DQ KW V NM++G+ ++V G L +T Y N GAA+S +G+ +F Sbjct: 1 MYYYLITLAVIALDQLTKWIVVQNMEIGQKIEVIPGFLYWTSYRNDGAAWSILEGHMWFF 60 Query: 61 AIIAVLFVAGIFYYRRKGELRGPILEAATGFLAGGAIGNAIDRVIYHQVTDFL--VFGSR 118 +I V+ + I Y +K + + F+ GGAIGN IDRV++ +V DF+ V+G+ Sbjct: 61 YLITVVVIGIIIYIMQKYAKGKRLFSISLAFILGGAIGNFIDRVLHQEVVDFVQTVWGNY 120 Query: 119 G-GILNLADLAINAGGLLVVVHLLKEPLK 146 I N+AD A++ G +L++V++ + K Sbjct: 121 YFPIFNVADAALSVGVVLMLVYVFVDDRK 149 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.329 0.145 0.432 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 874,061,838 Number of extensions: 33505445 Number of successful extensions: 113046 Number of sequences better than 1.0e-05: 1067 Number of HSP's gapped: 112593 Number of HSP's successfully gapped: 1067 Length of query: 152 Length of database: 3,060,696,203 Length adjustment: 114 Effective length of query: 38 Effective length of database: 1,986,700,493 Effective search space: 75494618734 Effective search space used: 75494618734 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 125 (52.8 bits)