BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0025.p (476 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6LR76.1 A6LR76_CLOB8 Putative PAS/PAC sensor protein 206 5e-51 C4IHC2.1 C4IHC2_CLOBU Putative PAS/PAC sensor protein 187 2e-45 B1QWW0.1 B1QWW0_CLOBU Putative PAS/PAC sensor protein 187 2e-45 B8DQ61.1 B8DQ61_DESVM Sensor protein EC=2.7.13.3 97 4e-18 B8FVN6.1 B8FVN6_DESHD Putative PAS/PAC sensor protein 90 4e-16 >A6LR76.1 A6LR76_CLOB8 Putative PAS/PAC sensor protein Length = 607 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 115/340 (33%), Positives = 199/340 (58%), Gaps = 17/340 (5%) Query: 153 LVELCPEAILVYSGGMILFANKQSEKMFGKKKKEMIGQRIEAFFSEEYLKSAKYKKLMTW 212 +++ P+A+++ I AN ++ +F ++IG + F ++Y K A +K Sbjct: 269 IIDNSPDAVIIIVDNKIALANNEACNLFATLYDDLIGSNVYRHFEDKY-KKALHKVFRNI 327 Query: 213 GSTAKERFRIEQRLIRYDNRIFDVEISGVPIIYEEEKALQLVLRDITESKKEVERAVKLQ 272 S K + + +N++ +V++S I+YE +A+ +RDITE K+++++A +LQ Sbjct: 328 ISERKMKEIYDYDFYVPNNKLINVQVSYSYILYEGNQAILAAIRDITEMKRDIKKAAELQ 387 Query: 273 NHRHTVVFPLEDKAELEKLYIPARTLSGDFFIFHKIDEERVIGMIGDVTGKGITAALNIS 332 FP + + +Y+PA T+SGDF+ ++I+E+ +IGMI DV GKGI+AALNIS Sbjct: 388 RSTLQKEFPAQKFIDTMSVYMPAHTISGDFYRIYEINEDFIIGMIIDVRGKGISAALNIS 447 Query: 333 ALRVL-FADCLEVTVDPLQAIKELNQKAMLHLGEDYIAGCCFQLDFGAGVLKAAGAGINE 391 A +L F + + DP++ +K LN+K + + E+Y+A CCF +DF + L+ GAGIN+ Sbjct: 448 AFDILCFQEVNKGHHDPMEIVKNLNKKLVKYYEENYVAVCCFSMDFNSNELRVVGAGINQ 507 Query: 392 FIYVPKDQESQCLTVRGAPLGMFGNSEFEEITVPFSSGDRFCFYSDGMELLFDTQELSRS 451 F++ K + + V G+ LGMF NSEF E T+ F SGD+ F++DG++ + + ++ + Sbjct: 508 FLFQKKGESLEEKIVEGSFLGMFDNSEFCEQTIFFESGDKIFFFTDGLDFILEEDKVIQE 567 Query: 452 Y--------------EYLTDKIAEA-SLQDDCTWLNLSIK 476 Y ++L+D I E+ L+DDCT + + IK Sbjct: 568 YMRDSSIFEFKNYLDDFLSDSILESGKLKDDCTMVAIEIK 607 >C4IHC2.1 C4IHC2_CLOBU Putative PAS/PAC sensor protein Length = 476 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 112/337 (33%), Positives = 188/337 (55%), Gaps = 22/337 (6%) Query: 158 PEAILVYSGGMILFANKQSEKMFGKKKKEMIGQRIEAFFSEEYLK--SAKYKKLMTWGST 215 P+A+++ I AN ++ +F ++ +E+I I +F E Y K K++ ++ Sbjct: 144 PDALMIIVDNRIEVANNEAVSLFDQEHEEIINSNIYKYFDERYSKILHKKFRNII-LSKK 202 Query: 216 AKERFRIEQRLIRYDN-RIFDVEISGVPIIYEEEKALQLVLRDITESKKEVERAVKLQNH 274 KE++ E + +DN + V+++ ++YE + A+ + +R+ +ES+K++ RA Q + Sbjct: 203 LKEKYDCE---LNFDNNKKTSVQLTCRYMMYEGKSAILMTVRNTSESRKDLIRAANFQRN 259 Query: 275 RHTVVFPLEDKAELEKLYIPARTLSGDFFIFHKIDEERVIGMIGDVTGKGITAALNISAL 334 F E +Y+PA T+SGDF+ +KI++E IG++ DV GKGI+AALNISAL Sbjct: 260 SLQRDFQGGKFFENVCVYVPAYTISGDFYRINKINDELFIGILIDVKGKGISAALNISAL 319 Query: 335 RVLFADCLEVTVDPLQAIKELNQKAMLHLGEDYIAGCCFQLDFGAGVLKAAGAGINEFIY 394 ++F + +P+ +K LN+K + E+YIA CCF ++F K GAGIN+F++ Sbjct: 320 ELMFMEETFTEYEPINIVKNLNRKIAKYYEENYIAVCCFSINFSKKEFKIVGAGINQFMF 379 Query: 395 VPKDQESQCLTVRGAPLGMFGNSEFEEITVPFSSGDRFCFYSDGMELLFDTQELSRSY-- 452 + ++++ G LGMF +SEF E + SGDR +SDG++ +FD E+ + Y Sbjct: 380 QKQGKKAEKKLAEGPFLGMFSDSEFSEKKIQIQSGDRLFLFSDGLDFIFDEDEIIKRYME 439 Query: 453 ------------EYLTDKIA-EASLQDDCTWLNLSIK 476 EYL D I E L+DD T + + IK Sbjct: 440 KVTLNDFKKYIDEYLEDTILDEGKLKDDSTMIGIEIK 476 >B1QWW0.1 B1QWW0_CLOBU Putative PAS/PAC sensor protein Length = 476 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 112/337 (33%), Positives = 188/337 (55%), Gaps = 22/337 (6%) Query: 158 PEAILVYSGGMILFANKQSEKMFGKKKKEMIGQRIEAFFSEEYLK--SAKYKKLMTWGST 215 P+A+++ I AN ++ +F ++ +E+I I +F E Y K K++ ++ Sbjct: 144 PDALMIIVDNRIEVANNEAVSLFDQEHEEIINSNIYKYFDERYSKILHKKFRNII-LSKK 202 Query: 216 AKERFRIEQRLIRYDN-RIFDVEISGVPIIYEEEKALQLVLRDITESKKEVERAVKLQNH 274 KE++ E + +DN + V+++ ++YE + A+ + +R+ +ES+K++ RA Q + Sbjct: 203 LKEKYDCE---LNFDNNKKTSVQLTCRYMMYEGKSAILMTVRNTSESRKDLIRAANFQRN 259 Query: 275 RHTVVFPLEDKAELEKLYIPARTLSGDFFIFHKIDEERVIGMIGDVTGKGITAALNISAL 334 F E +Y+PA T+SGDF+ +KI++E IG++ DV GKGI+AALNISAL Sbjct: 260 SLQRDFQGGKFFENVCVYVPAYTISGDFYRINKINDELFIGILIDVKGKGISAALNISAL 319 Query: 335 RVLFADCLEVTVDPLQAIKELNQKAMLHLGEDYIAGCCFQLDFGAGVLKAAGAGINEFIY 394 ++F + +P+ +K LN+K + E+YIA CCF ++F K GAGIN+F++ Sbjct: 320 ELMFMEETFTEYEPINIVKNLNRKIAKYYEENYIAVCCFSINFSKKEFKIVGAGINQFMF 379 Query: 395 VPKDQESQCLTVRGAPLGMFGNSEFEEITVPFSSGDRFCFYSDGMELLFDTQELSRSY-- 452 + ++++ G LGMF +SEF E + SGDR +SDG++ +FD E+ + Y Sbjct: 380 QKQGKKAEKKLAEGPFLGMFSDSEFSEKKIQIQSGDRLFLFSDGLDFIFDEDEIIKRYME 439 Query: 453 ------------EYLTDKIA-EASLQDDCTWLNLSIK 476 EYL D I E L+DD T + + IK Sbjct: 440 KVTLNDFKKYIDEYLEDTILDEGKLKDDSTMIGIEIK 476 >B8DQ61.1 B8DQ61_DESVM Sensor protein EC=2.7.13.3 Length = 1058 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 80/283 (28%), Positives = 126/283 (44%), Gaps = 33/283 (11%) Query: 23 YGCIYENNHLITLLVDPADGSITDANRAACEFYGYPLRIFRKLHITDLQADQTSGMVKFI 82 Y ++ENNH++ LL+DP +I DA+ AA EFYG+P + R +HI+D+ + Sbjct: 358 YRGLFENNHVVALLIDPTTKAIRDASPAAAEFYGWPRDVLRTMHISDINT-----LPPGT 412 Query: 83 EHG-MPGGEHGRNRVFMDKHLLAGGQQIDVEIHTGMMSMLGKSCIYTVIHDIXXXXXXXX 141 HG + G + F +H LA G DVE +TG + + G+ +Y++I D+ Sbjct: 413 LHGELSSAARGERQRFRFRHRLANGTTRDVESNTGTLVLHGEPLLYSIITDVTEQRRAEE 472 Query: 142 XXXXXXXXXXDLVELCPEAILVYSG-GMILFANKQSEKMFGKKKKEMIGQRIEAFFSEEY 200 LVE +AI + G G IL AN ++E G +++++ R+ F +E Sbjct: 473 ALRHSELRLRMLVESAGDAIYLADGAGHILDANPEAEHQTGHTREQLL--RMTLFDIDER 530 Query: 201 LKSAKYKKLMT-WGSTAKERFRIEQRL-----IRYDNRIFDVEISGVPIIYEEEKALQLV 254 L + +L S K F R + + R+ VE +G E + L + Sbjct: 531 LDQRVFARLRAELESARKATFETTHRTRNGTPLPVEVRMAQVEETGE---AEGDPLLLAI 587 Query: 255 LRDITESK---------KEVERAVK------LQNHRHTVVFPL 282 +RD + K KEV A L N H + PL Sbjct: 588 VRDSSARKRAESELRCAKEVAEAASRTKGEFLANMSHEIRTPL 630 >B8FVN6.1 B8FVN6_DESHD Putative PAS/PAC sensor protein Length = 370 Score = 90.1 bits (222), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 87/336 (25%), Positives = 151/336 (44%), Gaps = 23/336 (6%) Query: 153 LVELCPEAILVYSG-GMILFANKQSEKMFGKKKKEMIGQRIEAFFSEEYLKSAKYKKLMT 211 + E E I + + G I++ N K G +E +G+ S + S + M Sbjct: 32 VFEFAQEGICITNAQGDIIYVNPAFTKTTGFTLEEALGKNPRILKSGRH--SYGFYTQMW 89 Query: 212 WGSTAKERFRIEQRLIRYDNRIFDVEISGVPIIYEEEKALQ---LVLRDITESK---KEV 265 T K +++ E R + I+ E + + +E+ L + RD+T+ KEV Sbjct: 90 RDLTKKGQWQGEIWNKRKNGEIYP-EWLNIHAVRDEKAVLTHYVSIFRDMTDEMLILKEV 148 Query: 266 ERAVKLQNHRHTVVFPLEDKAELEKLYIPARTLSGDFFIFHKIDEERVI-GMIGDVTGKG 324 + A ++Q + F ++ ++ +Y+P LSGD++ + ++ RV+ G + DV G G Sbjct: 149 QLAGQIQKNILRSDFS-DEHLKMRSIYLPYHHLSGDYYDYRWDEKNRVLKGFLFDVMGHG 207 Query: 325 ITAALNISALRVLFADCLEVTVDPLQAIKELNQKAMLHLGED-YIAGCCFQLDFGAGVLK 383 + AAL ++ALRVLF + + + ++ +N +A L ED + A F +D G G Sbjct: 208 VAAALQVTALRVLFRQVVGRKIPLAEKVEWVNHEAKSILPEDSFAAAIFFDIDIGQGKFS 267 Query: 384 AAGAGINEFIYVPKDQESQCLTVRGAP---LGMFGNSEFEEITVPFSSGDRFCFYSDGME 440 AGIN +Y ++ + V P LG+ ++EFEE +GD F +DG Sbjct: 268 YVMAGINHLLYYSSERGQPGIRVLSQPGLFLGISEHAEFEEHECSLKAGDGMIFLTDGFY 327 Query: 441 LLFDTQE-------LSRSYEYLTDKIAEASLQDDCT 469 L +E + + +L L DD T Sbjct: 328 DLVQEKECPLQVMTIESTMHWLDSLSTGNELNDDAT 363 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.322 0.139 0.410 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,677,800,090 Number of extensions: 109656352 Number of successful extensions: 235417 Number of sequences better than 1.0e-05: 434 Number of HSP's gapped: 235640 Number of HSP's successfully gapped: 435 Length of query: 476 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 336 Effective length of database: 1,741,754,103 Effective search space: 585229378608 Effective search space used: 585229378608 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 133 (55.8 bits)