BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0444.0022.p
         (92 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C4IHC3.1 C4IHC3_CLOBU Anti-sigma-factor antagonist                    102   1e-20
B1QWW1.1 B1QWW1_CLOBU Anti-anti-sigma regulatory factor               102   1e-20
A6LR75.1 A6LR75_CLOB8 Anti-sigma-factor antagonist                     93   8e-18
A8W0R1.1 A8W0R1_9BACI FAD-dependent pyridine nucleotide-disulphi...    75   2e-12
Q24SE0.1 Q24SE0_DESHY Anti-sigma factor antagonist                     71   4e-11

>C4IHC3.1 C4IHC3_CLOBU Anti-sigma-factor antagonist
          Length = 94

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 62/84 (73%)

Query: 8  MPEMFSVEEASEFREKIRGHIDGGFSSFVLDFGGCAFIDSTGLGVIVSSYKKCVENGGTI 67
          +P+ F VEE ++FR KI  +ID G  +F+ DF  C+FIDSTGLG IVS YKKCVE  G++
Sbjct: 9  IPKDFCVEEVADFRIKINNYIDEGKVNFIFDFSSCSFIDSTGLGAIVSIYKKCVEKNGSL 68

Query: 68 KLKALNANVLKIFELTRLTHVFEI 91
          KLK+L   V K+F+LTRL  VFEI
Sbjct: 69 KLKSLGPEVKKLFQLTRLDRVFEI 92


>B1QWW1.1 B1QWW1_CLOBU Anti-anti-sigma regulatory factor
          Length = 94

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 49/84 (58%), Positives = 62/84 (73%)

Query: 8  MPEMFSVEEASEFREKIRGHIDGGFSSFVLDFGGCAFIDSTGLGVIVSSYKKCVENGGTI 67
          +P+ F VEE ++FR KI  +ID G  +F+ DF  C+FIDSTGLG IVS YKKCVE  G++
Sbjct: 9  IPKDFCVEEVADFRIKINNYIDEGKVNFIFDFSSCSFIDSTGLGAIVSIYKKCVEKNGSL 68

Query: 68 KLKALNANVLKIFELTRLTHVFEI 91
          KLK+L   V K+F+LTRL  VFEI
Sbjct: 69 KLKSLGPEVKKLFQLTRLDRVFEI 92


>A6LR75.1 A6LR75_CLOB8 Anti-sigma-factor antagonist
          Length = 90

 Score = 92.8 bits (229), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 45/86 (52%), Positives = 58/86 (67%)

Query: 6  IDMPEMFSVEEASEFREKIRGHIDGGFSSFVLDFGGCAFIDSTGLGVIVSSYKKCVENGG 65
          I +P+ F V+E + FR K+   ID G  +F+ +F  C FIDSTGLG +V+ YKKC E  G
Sbjct: 3  ISIPKDFVVDEVANFRVKVNKLIDEGQKNFIFNFNDCNFIDSTGLGALVAVYKKCAEKNG 62

Query: 66 TIKLKALNANVLKIFELTRLTHVFEI 91
          +IKLK L   V K+F+LTRL  VFEI
Sbjct: 63 SIKLKGLKPEVEKLFKLTRLDKVFEI 88


>A8W0R1.1 A8W0R1_9BACI FAD-dependent pyridine nucleotide-disulphide
          oxidoreductase
          Length = 100

 Score = 75.1 bits (183), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 31/89 (34%), Positives = 60/89 (67%)

Query: 2  SEIVIDMPEMFSVEEASEFREKIRGHIDGGFSSFVLDFGGCAFIDSTGLGVIVSSYKKCV 61
           ++++ + +  +V +A++ REK+   I+ G+  F++D    +FIDS GLG++V+++K+  
Sbjct: 10 DKVLVTLYDELTVTDAADLREKLYEKIEEGYKMFIIDMDRLSFIDSAGLGILVAAHKRTK 69

Query: 62 ENGGTIKLKALNANVLKIFELTRLTHVFE 90
          E GG +K++     V ++FE+TRLT VF+
Sbjct: 70 ERGGQMKIRHAKGAVYEVFEMTRLTSVFD 98


>Q24SE0.1 Q24SE0_DESHY Anti-sigma factor antagonist
          Length = 100

 Score = 70.9 bits (172), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 36/90 (40%), Positives = 57/90 (63%)

Query: 2  SEIVIDMPEMFSVEEASEFREKIRGHIDGGFSSFVLDFGGCAFIDSTGLGVIVSSYKKCV 61
           E+ +++     VE+A+  RE++   I+ G S FV D     +IDS+GLGV+V+ +K+ +
Sbjct: 10 QEVFVELEGKIYVEDAAVMRERLLPLIEQGKSHFVFDTHKLNYIDSSGLGVLVAIHKRAI 69

Query: 62 ENGGTIKLKALNANVLKIFELTRLTHVFEI 91
          E GG I ++ L   V ++F+LTRL  VFEI
Sbjct: 70 ERGGGIVVQGLQGAVKELFQLTRLNKVFEI 99


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.323    0.142    0.404 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 516,201,010
Number of extensions: 18993439
Number of successful extensions: 39379
Number of sequences better than 1.0e-05: 82
Number of HSP's gapped: 39450
Number of HSP's successfully gapped: 82
Length of query: 92
Length of database: 3,060,696,203
Length adjustment: 61
Effective length of query: 31
Effective length of database: 2,486,014,288
Effective search space: 77066442928
Effective search space used: 77066442928
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)