BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0019.p (1046 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C0Z4K6.1 C0Z4K6_BREBN Two-component hybrid sensor and regulator 1067 0.0 C0Z9Z8.1 C0Z9Z8_BREBN Two-component hybrid sensor and regulator ... 707 0.0 Q9KBB5.1 Q9KBB5_BACHD Sensor protein EC=2.7.13.3 699 0.0 Q4MVQ6.1 Q4MVQ6_BACCE Sensor protein EC=2.7.13.3 695 0.0 A3I5U2.1 A3I5U2_9BACI Sensor protein EC=2.7.13.3 687 0.0 >C0Z4K6.1 C0Z4K6_BREBN Two-component hybrid sensor and regulator Length = 1067 Score = 1067 bits (2760), Expect = 0.0, Method: Compositional matrix adjust. Identities = 541/1021 (52%), Positives = 712/1021 (69%), Gaps = 16/1021 (1%) Query: 33 RYLWFTTYVAPEHPQAVQGVLDLRSFQIGDSRSIPLDGEWEFYPDELLTHKDFPQP-DTR 91 R WF+ + +P+HPQA+QGVLD+R + +S SI LDGEWEFYPD +TH+DF Q + Sbjct: 41 RTFWFSFHASPDHPQAIQGVLDMRGWDFENSPSISLDGEWEFYPDSFITHEDFKQSSNDE 100 Query: 92 RHYAMVPGDWRNGFPEKGHASFGTGTYKLRILTGTPLDEPYGFWIQRIQAASEIEINGQK 151 R Y VPG+W + F + +G GTY+LRIL PL++PY W+ +++A+S +E+NG+ Sbjct: 101 RQYLQVPGNWSSAFSRASPSPYGYGTYRLRILVDQPLNQPYTLWVPQVEASSTVEVNGEI 160 Query: 152 EPSVGRLAESKEDYIPDAPSYTATYIAGDHREIELLVRVSNFDHPQKGGIVRSIRFGTQA 211 VG A + E+Y P S+TATYIAGD + IE+LVR +NF + +GGIVRSI FG+QA Sbjct: 161 VARVGVPATTAEEYTPQKASFTATYIAGDAKVIEVLVRTANFHNQIEGGIVRSIYFGSQA 220 Query: 212 AIDTERWYSIGFQLVAFIILLLHALYAGILYCFN-RQNVXXXXXXXXVAVGISIISDNDI 270 AIDTERWYSIGFQ+ F+ILLLH LYAGILY N R VGI +SD D Sbjct: 221 AIDTERWYSIGFQMTTFLILLLHGLYAGILYVLNARHKEFLVFFLLLSCVGIKTVSDYDN 280 Query: 271 LLRLWLPINYTWLLKIKLLSYMWLSYFMLQLSQSFSGRRRPHTGILFRSYAAVLGLYSAF 330 LL LWLPI+YTW +K+++L+Y+W M+ L +S S + FR+Y +VL LYSA Sbjct: 281 LLLLWLPIDYTWSIKVEVLAYIWQPLLMILLVRSLSDQEEKEYSKPFRAYLSVLSLYSAV 340 Query: 331 IVVMPAEIIFQTIL----LFSILYLLPVAGVVWKIVQMVLGKQEDXXXXXXXXXXXXXXX 386 I++ A+ ++ IL I+Y P+ ++KI +M++ + D Sbjct: 341 IILGTAQWVY--ILAGTPFLVIIYFGPLFLFIFKISRMLMYDKNDAVFLLIAATSILSNV 398 Query: 387 XW-GVVESRG-NTSNFFYPVDIIAAIIGFSAYWFKRYFRNSEENIKLNRQLQENDRLKDQ 444 W ++E + + +YP+D+IAA++ FSAYWFKR+FRNSEE KL QL+E D+LKDQ Sbjct: 399 IWSAIIEYKMIDIKYVYYPLDLIAALVSFSAYWFKRFFRNSEEKAKLTEQLKEADKLKDQ 458 Query: 445 FLANTSHELRTPLHGIISIAQTVAAKEHSVMDSKSVQDMDLLLTISRRMSHLLNDLLDVT 504 FLA+TSHELRTPLHGI++IAQTV E VM +S QDM+LL+TISRRMSHLL+DLLDV Sbjct: 459 FLAHTSHELRTPLHGILNIAQTVVNNEKHVMGDRSTQDMELLITISRRMSHLLDDLLDVV 518 Query: 505 RLQDKRIELQREPLSIQSLVSGVIDMFEFMTEGRALTLKNNIADSLPPVFADEKRLVQIL 564 RLQDK I LQ++PL IQS+VSG+I M +M EG+++ LK +I +S+PP+ ADEKRLVQIL Sbjct: 519 RLQDKHIVLQKKPLHIQSVVSGIISMLTYMVEGKSVQLKMDIPESIPPILADEKRLVQIL 578 Query: 565 FNLLHNAVKYTIEGSIAVSAETQGKEMLIHVADTGAGMNEETLSRIFKRYEXXXXXXXXX 624 FNL+HNA+K+T EG++ VSA++ ++ I+V+DTG GM+E T +RIF YE Sbjct: 579 FNLVHNALKFTEEGAVVVSAKSMDGQVAIYVSDTGIGMDEHTKARIFLPYEQGAQATNDG 638 Query: 625 XXXXXXXSICKQLVELHHGTLTVRSQPGQGSEFTFTLPLAKGTDQPASALSS--QEMPKN 682 +IC QLVELH L V S+PG+GS F F LP A TD+ +A S +++ K+ Sbjct: 639 GGIGLGLAICAQLVELHDSELRVDSEPGKGSVFRFELP-AVSTDEMKAAESQYVEQIDKS 697 Query: 683 TEPARPSVPAHSPLADLSAIWSAAHSGESEGAGRRIHILAVDDDSVNLKVLASILSSENY 742 + + S D+ A+ A E R+ +ILA+DDD VNL+VL +LSS +Y Sbjct: 698 NQVTAINQMGQSEAPDILAVQQTAAHAFVE---RKANILAIDDDPVNLRVLDRMLSSSHY 754 Query: 743 NIRTALGAHEALNLLGTEQWDLLIADVMMPHISGYELTRIVRERFSLSELPILLLTARTQ 802 I T +AL+LL TEQWDLLI DVMMPH+SGYELT+ VRE FS+SELPILLLTAR+Q Sbjct: 755 QITTCASPRDALDLLFTEQWDLLIIDVMMPHMSGYELTQRVREHFSVSELPILLLTARSQ 814 Query: 803 PEDIYTGFLSGANDYLVKPVDGLELKYRVRSLTGLKQSIDEMLRMEAAYLQAQIQPHFLF 862 ED+YTG+LSGANDY+ KPVDG+ELKYRV SLT LKQ++DE LRMEAAYLQAQI PHFLF Sbjct: 815 SEDVYTGYLSGANDYVCKPVDGMELKYRVWSLTTLKQTVDERLRMEAAYLQAQIHPHFLF 874 Query: 863 NTLNSIMALSEIDTAKMRDLSEAFSSYLRISFDYMNSHQRVALSHELELVRAYVYIEQAR 922 NTL+SIMALS+IDT KMR L +AF+++L ISFD++N+ ++VALSHELELV+AY+YIE+ R Sbjct: 875 NTLSSIMALSDIDTEKMRKLGDAFTAFLHISFDFLNTGKQVALSHELELVQAYLYIEKER 934 Query: 923 FEERLAVEWDIEDGINTALPPLTLQPLVENAVRHXXXXXXXXXXXTIRIRSSGGFTFFEV 982 F RL + W++E GI+ +PPLT+QPLVENA+ H IRI T FEV Sbjct: 935 FGGRLQIVWEVEPGIDLLIPPLTIQPLVENAINHGLLTQIEGGTLHIRIVRQKNATLFEV 994 Query: 983 RDNGKGMTQEQVSHLLDHSRKVSGGIGLLNTNRRLTQLYGRGLSIQSEPEQGTSVSFTIP 1042 +D+G GM + V +LD S+K GGIG+ NTNRRLTQ+YG+GL+I S+P +GT+VSF IP Sbjct: 995 KDDGIGMEEATVRQILDLSKKERGGIGVSNTNRRLTQMYGKGLAITSKPGEGTTVSFVIP 1054 Query: 1043 D 1043 D Sbjct: 1055 D 1055 >C0Z9Z8.1 C0Z9Z8_BREBN Two-component hybrid sensor and regulator EC=2.7.3.- Length = 1024 Score = 707 bits (1825), Expect = 0.0, Method: Compositional matrix adjust. Identities = 418/1026 (40%), Positives = 603/1026 (58%), Gaps = 41/1026 (3%) Query: 33 RYLW---FTTYVAPEHPQAVQGVLDLRSFQIGDSRSIPLDGEWEFYPDELLTHKDFPQPD 89 R LW TT+ E P AVQGVLDLR ++ + +++ LDGEWEF+P + + +P+ Sbjct: 23 RLLWMSFLTTFDYAEKPVAVQGVLDLRGWEFSEYQTLRLDGEWEFFPSQFIEGNGLKKPE 82 Query: 90 TRRHYAMVPGDWRNGFP-EKGHA-SFGTGTYKLRILTGTPLDEPYGFWIQRIQAASEIEI 147 + Y VP W F E+G + SF GTY+LRIL ++ GF I ++ AS + Sbjct: 83 GQT-YLQVPNKWDEAFVHEQGLSDSFHFGTYRLRILLDPEQEQTLGFRINELRTASTVYA 141 Query: 148 NGQKEPSVGRLAESKEDYIPDAPSYTATYIAGDHREIELLVRVSNFDHPQKGGIVRSIRF 207 NG+ G+ A S ++ YT + ++ELL+ VSN GGI + IRF Sbjct: 142 NGKLVAQAGQPATSNIEHQARNIPYTVK-LTPQQGQVELLIHVSN--DAGAGGITKPIRF 198 Query: 208 GTQAAIDTERWYSIGFQLVAFIILLLHALYAGILYCFNRQNVXXXXXXXXVAVGI-SIIS 266 GT A+ SI QL+ ++ L+H+LYA +LY +N + GI ++++ Sbjct: 199 GTIEAVQMRTILSISLQLLLLVVFLIHSLYALLLYFLGARNKGLVYFSLVMVCGIFTVVT 258 Query: 267 DNDILLRLWLPINYTWLLKIKLLSYMWLSYFMLQLSQ----SFSGRRRPHTGILFRSYAA 322 +D LL +WL +Y W +K+ L Y+ F+ L ++ RR + + ++ Sbjct: 259 ADDKLLFVWLQFDYDWTVKLTYLVYVGAVAFIPPLFHHLLPAYLNRR------ILQGFSG 312 Query: 323 VLGLYSAFIVVMPAEIIFQTILLFSILYLLPV---AGVVWKIVQMVLGKQEDXXXXXXXX 379 + LY+ FI+++PA I I + SI+ LL V A ++WK ++ +ED Sbjct: 313 LCSLYAIFILLVPAGTILAMIRMLSIVLLLSVIISAYILWKAIR----DKEDIIFLLLAC 368 Query: 380 XXXXXXXXWGVVESRGNTSNFFYPVDIIAAIIGFSAYWFKRYFRNSEENIKLNRQLQEND 439 W + S YP ++I A++ F+AYWF+R+FR + E L +LQ+ D Sbjct: 369 LFVGVNVIWTIAYSILGWEFIHYPFNLIFAVLAFAAYWFRRFFRATTETKHLAEKLQQED 428 Query: 440 RLKDQFLANTSHELRTPLHGIISIAQTVAAKEHSVMDSKSVQDMDLLLTISRRMSHLLND 499 + KD+FL NTSHELR PLHGII+I Q + ++ + + + +D+LL +SRR++ +L+D Sbjct: 429 KRKDEFLVNTSHELRNPLHGIINITQAIIEDTNNPLHEEHKKRLDILLHVSRRLTLMLDD 488 Query: 500 LLDVTRLQDKRIELQREPLSIQSLVSGVIDMFEFMTEGRALTLKNNIADSLPPVFADEKR 559 LLDVTRL++ I L + L++QS+ +GV DM + M +G+ + L+ I DS P V DE R Sbjct: 489 LLDVTRLKENSIRLHEKKLNLQSIFAGVFDMAKLMLDGKPIALQVEIDDSFPAVRGDENR 548 Query: 560 LVQILFNLLHNAVKYTIEGSIAVSAETQGKEMLIHVADTGAGMNEETLSRIFKRYEXXXX 619 L+QILFNL+HNA+K+T EG+I + A T I V DTG G+ E+ L IF+ YE Sbjct: 549 LIQILFNLVHNAIKFTDEGTITIRATTSNGFAQIQVEDTGVGVEEKALQTIFQPYEQAEL 608 Query: 620 XXXXXXXXXXX-XSICKQLVELHHGTLTVRSQPGQGSEFTFTLPLAKGTDQPASALSSQE 678 I KQLVELH GTL+V+S G+GS FTFTLPLA S Sbjct: 609 NAIRASGGFGLGLHISKQLVELHGGTLSVQSTLGKGSAFTFTLPLAS---------DSVL 659 Query: 679 MPKNTEPARPSVPAHSPLADLSAIWSAAHSGESEGAGRRIHILAVDDDSVNLKVLASILS 738 + +N+ A I ++ + S RR I+ VDDDS+NL +L+ +L Sbjct: 660 IEENSAQTWMQTSLEMAAATTDRIITSTETVSS--MNRRARIIVVDDDSINLNILSKMLE 717 Query: 739 SENYNIRTALGAHEALNLLGTEQWDLLIADVMMPHISGYELTRIVRERFSLSELPILLLT 798 S+ Y + TA A +AL++L DL+I+DVMMPH+SGYELTRI+RERFS+ ELP+LLLT Sbjct: 718 SDQYEVSTATSAQQALSILERNPVDLVISDVMMPHVSGYELTRIIRERFSVLELPVLLLT 777 Query: 799 ARTQPEDIYTGFLSGANDYLVKPVDGLELKYRVRSLTGLKQSIDEMLRMEAAYLQAQIQP 858 AR++ EDI GF +GANDY+ KPVD ELK RV++LT K S DE LRME A+LQ+QI+P Sbjct: 778 ARSRSEDIIAGFQAGANDYVKKPVDAWELKARVKALTEFKISFDERLRMEGAWLQSQIEP 837 Query: 859 HFLFNTLNSIMALSEIDTAKMRDLSEAFSSYLRISFDYMNSHQRVALSHELELVRAYVYI 918 HFLFN LNSI AL D KM+ L E FS+YLR+SFD+ NS ++L EL+LVR+Y+YI Sbjct: 838 HFLFNALNSIAALGLQDFTKMQTLLEEFSNYLRLSFDFHNSEPVISLHDELDLVRSYLYI 897 Query: 919 EQARFEERLAVEWDIEDGINTALPPLTLQPLVENAVRHXXXXXXXXXXXTIRIRSSGGFT 978 E+ RF +RL VEWD++ ++ LPPL++QPLVENA++H I I+ + + Sbjct: 898 EKQRFGDRLQVEWDLDPDLDFCLPPLSIQPLVENAIKHGLMQRTSGGTVWIHIKDNEEYF 957 Query: 979 FFEVRDNGKGMTQEQVSHLLDHSR--KVSGGIGLLNTNRRLTQLYGRGLSIQSEPEQGTS 1036 ++D+G+G+ +E ++ L +R K +GL N RRL QLY +GL+I S PEQGT Sbjct: 958 EISIQDDGEGIAEEDLNQLFSQTRHGKKRASVGLRNIERRLRQLYNQGLTINSSPEQGTI 1017 Query: 1037 VSFTIP 1042 V+F IP Sbjct: 1018 VTFGIP 1023 >Q9KBB5.1 Q9KBB5_BACHD Sensor protein EC=2.7.13.3 Length = 914 Score = 699 bits (1805), Expect = 0.0, Method: Compositional matrix adjust. Identities = 373/878 (42%), Positives = 535/878 (60%), Gaps = 36/878 (4%) Query: 184 IELLVRVSNFDHPQKGGIVRSIRFGTQAAIDTERWYSIGFQLVAFIILLLHALYAGILYC 243 I L++ VS+ ++ GG+++SIRFGT+ A++ E W + QL+ I+ +H +YA IL+ Sbjct: 49 IHLMIAVSSSENIYDGGVLKSIRFGTEVAMNREHWSTSAAQLMVAAIMFIHGIYACILFF 108 Query: 244 FNRQNVXXXXXXXXVAV-GISIISDNDILLRLWLPINYTWLLKIKLLSYMWLS-YFMLQL 301 + + V + S++ ++ LL W+P+NY W +K+ LSY LS +F+L + Sbjct: 109 IRPKKIELLYFMVAVLLSAFSVLVSDERLLLQWVPLNYEWFIKLAYLSYTGLSLFFLLFV 168 Query: 302 SQSFSGRRRPHTGILFRSYAAVLGLYSAFIVVMPAEIIFQTILLFSILYLLPVAGVVWKI 361 FS +R + R + LY+ FI++ PA I + ++ + +P ++ + Sbjct: 169 RYLFSNYKRNQS---VRWISGFCALYALFILIAPATTIREWTIMLLFVLAIPFTTIILLV 225 Query: 362 VQMVLGKQEDXXXXXXXXXXXXXXXXWGVVESRGNTSNF---------FYPVDIIAAIIG 412 VQ++L K+ D W R + + FYPVD+ A + Sbjct: 226 VQVILKKERDSLFLLLAAISVASSILWSSFTGRVKSFEWGILSQIDYSFYPVDLTLAFLC 285 Query: 413 FSAYWFKRYFRNSEENIKLNRQLQENDRLKDQFLANTSHELRTPLHGIISIAQTVAAKEH 472 FS +WF R+FR +++ L +LQ+ KDQFLANTSHELR PLHG+I+IAQ V +E Sbjct: 286 FSTFWFIRFFRANDDKADLVTKLQKEHVKKDQFLANTSHELRNPLHGMINIAQGVVEQEG 345 Query: 473 SVMDSKSVQDMDLLLTISRRMSHLLNDLLDVTRLQDKRIELQREPLSIQSLVSGVIDMFE 532 + +S Q+++LL+T+ RRMS+LLNDL+DVT+++ K++ L ++P ++ + V+ V+++ Sbjct: 346 GRLAPESRQNLELLMTVGRRMSYLLNDLIDVTKMKQKKVTLTKQPTNLLAAVTTVVNVQR 405 Query: 533 FMTEGRALTLKNNIADSLPPVFADEKRLVQILFNLLHNAVKYTIEGSIAVSAETQGKEML 592 FM E + L ++ NI P V+ADE RL QILFNL+HNA+KYT EG+I + A+ + K + Sbjct: 406 FMVEAKNLRIEVNIPHDFPLVYADETRLGQILFNLVHNAIKYTEEGTIVIEAKVKKKRAV 465 Query: 593 IHVADTGAGMNEETLSRIFKRYEXXXXXXXXXXXXXXX-XSICKQLVELHHGTLTVRSQP 651 I V DTG GM+EET RIF YE SIC+ LV +H+GTL V+S P Sbjct: 466 IRVKDTGIGMDEETQKRIFHPYEQGAKEHYHENGGFGLGLSICRDLVSMHNGTLAVQSAP 525 Query: 652 GQGSEFTFTLPLA-------KGTDQPASALSSQEMPKNTEPARPSVPAHSPLADLSAIWS 704 +GS FTFTLPLA K D + +E + E A +P +P+ Sbjct: 526 SKGSIFTFTLPLASSSEREEKQRDAGQEVVRFREHKIDEEVAASHLPTSAPV-------- 577 Query: 705 AAHSGESEGAGRRIHILAVDDDSVNLKVLASILSSENYNIRTALGAHEALNLLGTEQWDL 764 +EG R+ IL VDDD+VNL VL +I+ SE Y I E L+ L + WDL Sbjct: 578 -----RTEGLERKPKILIVDDDAVNLHVLKNIICSEAYTIEAVTSGEEVLDRLD-QGWDL 631 Query: 765 LIADVMMPHISGYELTRIVRERFSLSELPILLLTARTQPEDIYTGFLSGANDYLVKPVDG 824 ++ADVMMP +SGYELTR +R +FS+SELP+LLLTAR QPE++YTGF+SGANDYLVKP+D Sbjct: 632 ILADVMMPSMSGYELTREIRNQFSISELPVLLLTARGQPEEVYTGFMSGANDYLVKPIDA 691 Query: 825 LELKYRVRSLTGLKQSIDEMLRMEAAYLQAQIQPHFLFNTLNSIMALSEIDTAKMRDLSE 884 LELK R+R++ LK SI E LRMEAA+LQAQIQPHFLFNTLN+I +LSEIDT +M L E Sbjct: 692 LELKVRIRAVIELKHSIQERLRMEAAWLQAQIQPHFLFNTLNTIASLSEIDTKRMAALLE 751 Query: 885 AFSSYLRISFDYMNSHQRVALSHELELVRAYVYIEQARFEERLAVEWDIEDGINTALPPL 944 F +LR SFD N H V ++HEL L +YVYIEQ RF ERL V WD ++ + LPPL Sbjct: 752 KFGQFLRKSFDGQNIHSLVPITHELALTESYVYIEQERFGERLKVHWDKDEHVVCNLPPL 811 Query: 945 TLQPLVENAVRHXXXXXXXXXXXTIRIRSSGGFTFFEVRDNGKGMTQEQVSHLLDHSRKV 1004 ++QPLVENA++H IRI+ + D+G GM + ++++L Sbjct: 812 SIQPLVENALKHGVLKKPEGGNVHIRIKKQEETVKIMITDDGVGMDKATLNNVLTRKPDQ 871 Query: 1005 SGGIGLLNTNRRLTQLYGRGLSIQSEPEQGTSVSFTIP 1042 GIG+LNT+ RL QL+G+GL ++S+P +GTS+SF +P Sbjct: 872 VSGIGMLNTDLRLKQLFGKGLFVESQPGKGTSISFYVP 909 >Q4MVQ6.1 Q4MVQ6_BACCE Sensor protein EC=2.7.13.3 Length = 1018 Score = 695 bits (1793), Expect = 0.0, Method: Compositional matrix adjust. Identities = 405/1042 (38%), Positives = 593/1042 (56%), Gaps = 53/1042 (5%) Query: 19 IVIVLLYLAVLSAIRYLWFTTYVAPEHPQAVQGVLDLRSFQIGDSRSIPLDGEWEFYPDE 78 +++V L++ + R +WF + P A +G+++L G+ + L+GEW+FYP+ Sbjct: 7 LIVVFLFILCIVGFRSIWFKQSLYINQPHAEEGIVNLSDITFGEKNLVTLNGEWKFYPNV 66 Query: 79 LLTHKDFPQPDTRRHYAMVPGDWRNGFPEKGHASFGTGTYKLRILTGTPLDEPYGFWIQR 138 LLT + + Y VPG+W+ +GT +++ +E YG IQR Sbjct: 67 LLTPDQMKENNKDYEYINVPGNWKERVDRTHQKEYGTYALSIKVKNS---NENYGLKIQR 123 Query: 139 IQAASEIEINGQKEPSVGRLAESKEDYIPDAPSYTATYI---AGDHREIELLVRVSNFDH 195 + ++ +NG+ G + + + + S T T I A + I LL+ V+ Sbjct: 124 VHNQFDLYVNGELVQERGSIFKPNDVH---KTSLTPTVIKVKANEQGVINLLIPVTKTTQ 180 Query: 196 PQK-GGIVRSIRFGTQAAIDTERWYSIGFQLVAFIILLLHALYAGILYCFNRQNVXXXXX 254 K GGI +RFG++ AI + + ++ Q++A I+ LH +YA I++ +NV Sbjct: 181 ESKHGGITGGVRFGSENAIVQDSFNNLMMQIIATTIVFLHGIYAFIIFVMKPKNVEILYF 240 Query: 255 X--XXVAVGISIISDNDILLRLWLPINYTWLLKIKLLSYMWLSYFMLQLSQSFSGRRRPH 312 A I +I+D L L+ ++ +KI +S++ + F+L + F + Sbjct: 241 SLGSIFAGIIFLITDERFLFSLY-EFEFSTYMKIIYISFVGFALFILLYMKRFLRGYGDN 299 Query: 313 TGILFRSYAAVLGLYSAFIVVMPAEIIFQT---ILLFSILY-LLPVAGVVWKIVQMVLGK 368 ILF + G+Y F+V+ + + Q IL F+I+ + A +V ++V+ GK Sbjct: 300 KFILFT--IVLCGIY-VFVVLFSSPRLVQDFGFILFFTIIIPFILTAIIVLRVVES--GK 354 Query: 369 QE-----DXXXXXXXXXXXXXXXXWGVVESRGNTSNF---FYPVDIIAAIIGFSAYWFKR 420 + + + S G F FYP DI A++ FS +WF R Sbjct: 355 YDLIFLLFTVISATSGVLCASFKEFAFMYSIGFARIFDADFYPFDIFLAMVSFSTFWFIR 414 Query: 421 YFRNSEENIKLNRQLQENDRLKDQFLANTSHELRTPLHGIISIAQTVAAKEHSVMDSKSV 480 +FR S+EN +L +L+E KDQFLANT+HELR PLHG+++IAQ+V +E ++ + +S Sbjct: 415 FFRTSDENSELVGKLKEEHHKKDQFLANTAHELRNPLHGMMNIAQSVMDEEKAI-NGESK 473 Query: 481 QDMDLLLTISRRMSHLLNDLLDVTRLQDKRIELQREPLSIQSLVSGVIDMFEFMTEGRAL 540 Q + LL+TI RRMS+LLNDL+DVTR++ K I + + P+ +Q +++ VIDM +F+ E + L Sbjct: 474 QHLKLLMTIGRRMSYLLNDLIDVTRMEQKGIPIHKRPVDLQPIITMVIDMQKFIGEEKKL 533 Query: 541 TLKNNIADSLPPVFADEKRLVQILFNLLHNAVKYTIEGSIAVSAETQGKEMLIHVADTGA 600 + NI + P V AD+ RL+QILFNLLHNAVK+T EG+I + E + I V DTG Sbjct: 534 QIIANIPERFPFVLADQNRLIQILFNLLHNAVKFTDEGAITIDVEKRKNYAAIQVTDTGI 593 Query: 601 GMNEETLSRIFKRYEXXXXXXXXXXXXXXXXSICKQLVELHHGTLTVRSQPGQGSEFTFT 660 G+++E RIF YE SICKQLVE+H GTLTV S +GS FTFT Sbjct: 594 GIDKEAQKRIFLPYEQGSDSYGESGGFGLGLSICKQLVEMHGGTLTVTSVLHKGSTFTFT 653 Query: 661 LPLAKGTDQPASALSSQEMPKNTEPARPSVPAHSPLADLSAIWSAAHSGESEGAGRRIHI 720 LPLA+ + +S + + K E + + + G R I Sbjct: 654 LPLAE--REEMLIVSKETIEKVVELKQVEMKDNR-------------------VGNRKRI 692 Query: 721 LAVDDDSVNLKVLASILSSENYNIRTALGAHEALNLLGTEQWDLLIADVMMPHISGYELT 780 LAVDDD +NLKVL SIL + Y + T E L L E WD+++ DVMMP +SGYELT Sbjct: 693 LAVDDDPINLKVLKSILPQDEYELETVTTGREVLERLNME-WDMILVDVMMPKMSGYELT 751 Query: 781 RIVRERFSLSELPILLLTARTQPEDIYTGFLSGANDYLVKPVDGLELKYRVRSLTGLKQS 840 +++R ++S++ELPI+LLTAR+QPEDIYTGFL+GANDY+VKP+D LELK R+ +LT LKQS Sbjct: 752 KMIRTQYSIAELPIVLLTARSQPEDIYTGFLAGANDYIVKPIDALELKVRINALTELKQS 811 Query: 841 IDEMLRMEAAYLQAQIQPHFLFNTLNSIMALSEIDTAKMRDLSEAFSSYLRISFDYMNSH 900 I E +RME A+LQAQIQPHFLFNTLN+I AL EID +M L F +YLR SF Sbjct: 812 IHERIRMEGAWLQAQIQPHFLFNTLNTIAALGEIDIVRMEKLIVEFGTYLRASFGEEVLA 871 Query: 901 QRVALSHELELVRAYVYIEQARFEERLAVEWDIEDGINTALPPLTLQPLVENAVRHXXXX 960 + V + HEL+L+++Y+YIE+ RF +R+ ++EDGI +PP ++Q LVENAVRH Sbjct: 872 ETVPIQHELDLLQSYLYIERERFGKRIQSVLEVEDGIECVVPPFSIQTLVENAVRHGILK 931 Query: 961 XXXXXXXTIRIRSSGGFTFFEVRDNGKGMTQEQVSHLLDHSRKVSGGIGLLNTNRRLTQL 1020 I+I S GF + D+G GM+ E++ +L GIGLLNT+ RL QL Sbjct: 932 KAKGGSIHIKIESVSGFINISIADDGIGMSDEKIKEILVKKPNQKQGIGLLNTDARLKQL 991 Query: 1021 YGRGLSIQSEPEQGTSVSFTIP 1042 YG GL I+SE +GT VSF +P Sbjct: 992 YGTGLEIKSELGKGTIVSFQLP 1013 >A3I5U2.1 A3I5U2_9BACI Sensor protein EC=2.7.13.3 Length = 1021 Score = 687 bits (1774), Expect = 0.0, Method: Compositional matrix adjust. Identities = 393/1020 (38%), Positives = 593/1020 (58%), Gaps = 32/1020 (3%) Query: 29 LSAIRYLWFTTYVAPEHPQAVQGVLDLRSFQIGDSRSIPLDGEWEFYPDELLTHKDFPQP 88 L+ R LW ++ P+ P A++G +D+R+F S ++ LDGEW FYP + L Sbjct: 17 LTGSRILWLQSFTQPDQPYAMKGQMDVRNFDFQQS-ALTLDGEWSFYPSQWLMDNH---- 71 Query: 89 DTRRHYAMVPGDWRNGFPEKGHASFGTGTYKLRILTGTPLDEPYGFWIQRIQAASEIEIN 148 + + Y VP W F E + FG G+Y+L+IL + + + I++A+EI +N Sbjct: 72 SSNQTYIQVPDGWDKVFQEGEQSPFGYGSYQLKILVNPDETKTFSIRVPSIRSAAEIYVN 131 Query: 149 GQKEPSVGRLAESKEDYIPDAPSYTATYIAGDHREIELLVRVSNFDHPQKGGIVRSIRFG 208 + G L E++ + +TA++ EIEL+++V+NF P+ GGIVRSI+FG Sbjct: 132 DRFIAKSGELGENRAQTVAKNVPFTASFETNGESEIELIIQVANFQDPRNGGIVRSIKFG 191 Query: 209 TQAAIDTERWYSIGFQLVAFIILLLHALYAGILYCF-NRQNVXXXXXXXXVAVGIS-IIS 266 + I+ E S+ QL+ ++L+LHA+Y+ ILY N+ V++ ++ Sbjct: 192 QEDVINRETQLSVTMQLLVAVVLVLHAIYSVILYLVGNKDKRLLFFSILTVSIMFYYLLG 251 Query: 267 DNDILLRLWLPINYTWLLKIKLLSYMWLSYFMLQLSQSFSGRRRPHTGILFRSYAAVLGL 326 +D LL W PINY W + LS + + Y +LQ + + PH + Y V Sbjct: 252 SDDKLLSFWFPINYDWGFILVHLSMVSIGYSLLQCIEHW---LPPH----LQLYKHVYTF 304 Query: 327 YSAFIVVMPAEIIFQTILLFSILYLLPVAGVVWKIVQMVLGKQ----EDXXXXXXXXXXX 382 +S +++ + + ++ Y++ + + + +++GK Sbjct: 305 FSMVAILLAFTLPIRYLVSMQAFYMVILGAPIVITLILMIGKSIKDIRRNVFILLGLVAF 364 Query: 383 XXXXXWGVVESRGNTSNFFYPVDIIAAIIGFSAYWFKRYFRNSEENIKLNRQLQENDRLK 442 W V+ YP D+I I + WFK Y + + +L +LQE D++K Sbjct: 365 VNSIIWDVILLITGIKIISYPFDLIVTIACLATLWFKDYAKVHADTKELAHKLQEIDKIK 424 Query: 443 DQFLANTSHELRTPLHGIISIAQTVAAKEHSVMDSKSVQDMDLLLTISRRMSHLLNDLLD 502 D+FLA+TSHELR PLH II++++ V +E + +KSV D++ +L++ RMS LLNDLLD Sbjct: 425 DEFLASTSHELRNPLHSIINMSKAVLDREAKTLTTKSVNDLETVLSVGNRMSLLLNDLLD 484 Query: 503 VTRLQDKRIELQREPLSIQSLVSGVIDMFEFMTEGRALTLKNNIADSLPPVFADEKRLVQ 562 V RL+D +LQ +SI S+ GV DM FM EG+ + I + V ADE R++Q Sbjct: 485 VMRLKDDTQQLQLSMVSIHSIAVGVFDMLRFMIEGKPVQFVLKIPEDFQRVQADENRVIQ 544 Query: 563 ILFNLLHNAVKYTIEGSIAVSAETQGKEMLIHVADTGAGMNEETLSRIFKRYEXXXXXXX 622 I+FNL+HNAVK+T EGSI +S+ T+ I + DTG G+++ET+ RIF+ YE Sbjct: 545 IVFNLVHNAVKFTNEGSITISSYTRNGMANIVITDTGIGVDDETMRRIFEPYEQGTISKT 604 Query: 623 XXXXXXXX-XSICKQLVELHHGTLTVRSQPGQGSEFTFTLPLAKGTDQPASALSSQEMPK 681 +ICK+L+E H GTL V+S GQGS FTFTLPLA S+ ++P Sbjct: 605 MVEGGFGLGLNICKRLIEFHGGTLEVQSVVGQGSTFTFTLPLADE--------SNVQVP- 655 Query: 682 NTEPARPSVPAHSPLADLSAIWSAAHSGESEGAGRRIHILAVDDDSVNLKVLASILSSEN 741 E R SV S + +A AA + IL VDD+ +NL+V+ +IL++E Sbjct: 656 -LEKVRQSVSKSS---ERTASLQAALEDDQSAEWNHPRILVVDDEPINLRVVETILANEQ 711 Query: 742 YNIRTALGAHEALNLLGTEQWDLLIADVMMPHISGYELTRIVRERFSLSELPILLLTART 801 Y+I T +AL + + +WDL+I+DVMMP +SGYEL R++R++FS+++LPILLLTAR+ Sbjct: 712 YDIVTVTSGLDALVSIQSHEWDLVISDVMMPKMSGYELVRLIRKQFSITDLPILLLTARS 771 Query: 802 QPEDIYTGFLSGANDYLVKPVDGLELKYRVRSLTGLKQSIDEMLRMEAAYLQAQIQPHFL 861 QP+++ GFL+GANDY+ KPVD LEL+ RV +L +K+SI E RMEAA+LQAQI+PHFL Sbjct: 772 QPQNLEKGFLAGANDYVTKPVDALELRSRVAALIKVKRSIQERHRMEAAWLQAQIEPHFL 831 Query: 862 FNTLNSIMALSEIDTAKMRDLSEAFSSYLRISFDYMNSHQRVALSHELELVRAYVYIEQA 921 FNTLN+I+ LSE+D+ + L EA S +LR S+++ N V L +EL L++AY+YI+Q Sbjct: 832 FNTLNAILTLSEMDSERTSRLVEALSDFLRESYNFQNVEALVPLENELTLIQAYLYIQQE 891 Query: 922 RFEERLAVEWDIEDGINTALPPLTLQPLVENAVRHXXXXXXXXXXXTIRIRSSGGFTFFE 981 RF +R+ V+WD+E + +P LT+QPLVENA++H IRI S Sbjct: 892 RFGDRIHVKWDLEASTDVLIPSLTIQPLVENALQHGILKRTEGGTIHIRIFESESQLEIT 951 Query: 982 VRDNGKGMTQEQVSHLLDHSRKVSGGIGLLNTNRRLTQLYGRGLSIQSEPEQGTSVSFTI 1041 V DNG GM + ++S LL +++ S IGL+NT+ RL Q YG+GL+I S+ +GTSVSF + Sbjct: 952 VSDNGVGMDELRLSQLLQTTQQPSKSIGLMNTHLRLQQHYGQGLTITSKLHEGTSVSFVV 1011 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 5,707,971,471 Number of extensions: 234093358 Number of successful extensions: 847545 Number of sequences better than 1.0e-05: 42858 Number of HSP's gapped: 792507 Number of HSP's successfully gapped: 44895 Length of query: 1046 Length of database: 3,060,696,203 Length adjustment: 146 Effective length of query: 900 Effective length of database: 1,685,228,013 Effective search space: 1516705211700 Effective search space used: 1516705211700 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 137 (57.4 bits)