BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0016.p (531 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA50.1 B3KA50_9BACI Response regulator receiver 139 9e-31 A9KI78.1 A9KI78_CLOPH Two component transcriptional regulator, A... 130 2e-28 A6LXG2.1 A6LXG2_CLOB8 Response regulator receiver protein 111 1e-22 A7VQN0.1 A7VQN0_9CLOT Putative uncharacterized protein 96 8e-18 A6M1R0.1 A6M1R0_CLOB8 Response regulator receiver protein 96 1e-17 >B3KA50.1 B3KA50_9BACI Response regulator receiver Length = 532 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 139/527 (26%), Positives = 245/527 (46%), Gaps = 54/527 (10%) Query: 24 LVGEAEDGQDGLELFLKHKPELIVTDITMPGMNGLEMLREIEKSGERPPQIIILTCHQDF 83 +VGEA+ G L+L + P +I++DI MPGM+G+ +++E+ K+ + II ++ + +F Sbjct: 36 VVGEAKSGDGALKLAREVSPHIIISDIRMPGMDGITLMKEL-KADQARRIIIFISGYGEF 94 Query: 84 HYAQQAIHLKAASYLIKDDCLSDPGLLTRTMEQLASQVHSIDETREKQLQLEQQVR---- 139 YA++A+ A YL+K D LT T+ + A T EKQ+ +Q + Sbjct: 95 EYAREALREGAFDYLLKP---IDHDELTETIARAA-------RTLEKQIADDQMLHSIKV 144 Query: 140 LSEVEIEQSL--FLDMLLNPAAEAKWLRTLEESQLPVQEGRFKVLLLELDRGSLRFPIGQ 197 LS + E+ L F++ +P +WL E+S+L E + + +++LD+ + Sbjct: 145 LSLLARERMLTEFIEGNRSPLQHMQWL---EDSEL---EHGYTMAVIQLDQYLRLNELWS 198 Query: 198 IEELKLWQFAGVNVLKELLGGIGAHKVIALDKGRFLAVYTDALKLERPGFLEQVLESFAA 257 ++E +LW FA NVL+E G V G ++ ++ + K + +++ Sbjct: 199 MDEKRLWLFAVRNVLEEWSLQHGGLTVFPFRSGEWVLLFPNLTKERQEDIGRDLVQLIKR 258 Query: 258 NLKMKCFALQCRFEQGLRGRPEALKRLASAPYPFFYRSDESIAIEEWEQFAFFQRIPEPV 317 N K+ C G+ A + A Y FY +E + F P+ V Sbjct: 259 NTKLSCSVGFSPSMAGIDRLGTAYETAVRALYQRFYSGEEGV----------FLGTPDSV 308 Query: 318 SRFWSKVLKKALLEPHL--SAAALEQERS-SLFRQAI----EHGWEPEQIKSLYLRVFLD 370 S+ LE + S L +ER LF + EHG+ E + RV L+ Sbjct: 309 LETASEAKYPKHLESLMVESIRTLHKERLLELFDETKAYIEEHGFSREMTE----RVLLE 364 Query: 371 MSHTVIXXXXXXXXXXXXXXXXXXCQ------TFGSVHDTTCAYFHKLQQLQEGGKKID- 423 MS V+ Q T + D ++F K G+ D Sbjct: 365 MS-VVLYRQFEHMKVLFEWSLEELLQELHASGTLQQLMDVIKSHFSKWIAESRSGQAKDN 423 Query: 424 --SSISRIIQHMREDLSYPYKLEELAASMNYSVPYFSSMFKKAVGESFVQYLTRLRIEKA 481 + + + +++ E+ +EE++ + S+ +F ++FK G +F++YLT RIEKA Sbjct: 424 VQAVMGKAKEYIAENYQKDLTIEEVSELADLSISHFCTLFKGTTGYTFLEYLTECRIEKA 483 Query: 482 KLLLLTTDHKTFEISESIGFENYRSFNRIFKKETGVSPSDYRRNGAA 528 K +LL TD K ++++ +G+++ R F ++FKK TG +PS+YR + Sbjct: 484 KSILLNTDVKVYQVAPLVGYQDPRYFTQVFKKITGKTPSEYREEAVS 530 >A9KI78.1 A9KI78_CLOPH Two component transcriptional regulator, AraC family Length = 522 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 138/551 (25%), Positives = 249/551 (45%), Gaps = 66/551 (11%) Query: 1 VEDEIPARTVFRHFIEERGDLFTLVGEAEDGQDGLELFLKHKPELIVTDITMPGMNGLEM 60 VED+I H I + +VG+AE+G + L + + P+LI+TDITMP MNGL++ Sbjct: 7 VEDDIEMLNGLLHIIAWEDYGYLIVGKAENGAEALNIVKEKSPDLIITDITMPKMNGLDL 66 Query: 61 LREIE--KSGERPPQIIILTCHQDFHYAQQAIHLKAASYLIKDDCLSDPGLLTRTMEQLA 118 ++ + KSG + II++C++DF+YA++AI L+A Y++K + L T+EQ Sbjct: 67 IKSAKEFKSGIKS---IIISCNEDFNYAREAIKLEADDYILKHTLTKES--LINTLEQFR 121 Query: 119 SQVHSIDETREKQLQLEQQVRLSEVEIEQSLFLDMLLNPAAEAKWLRTLE------ESQL 172 + E R++Q E + +++ + + L+ + +E R E + + Sbjct: 122 RKFV---EERQQQTSFEDAIH--KLKANKFILLEQFFSDISEGILARDQEILHQAKKMNV 176 Query: 173 PVQEGRFKVLLLELDRGSLRFPIGQIEELKLWQFAGVNVLKELLGGIGAHKVIALDKGRF 232 + E +++ L +D I+E L +FA +NV++E + + ++G F Sbjct: 177 KLPEKNMRIISLYIDNLESVITDHPIKEYSLLKFAFLNVMEETIDNRDGIILFPYNRGAF 236 Query: 233 LAVYTDALKLERPGFLEQVLESFAAN----LKMKCFALQCRFEQGLRGRPEALKRLASAP 288 +Y D L ++Q+++ +N L++ A ++ + L++ Sbjct: 237 GILYDDTLI--STNTVQQLIKKLISNATSFLRLPLSACFSNVFHSVKDIGKILRQNEVLR 294 Query: 289 YPFFYRSDESIAIEEWEQFAFFQRIPEPVSRFWSKVLK--KALLEPHLSAAALEQERSSL 346 +FY I I E A+ P++ + K LL + L++ L Sbjct: 295 SYYFYSGSLQI-ITEPPLDAY------PIADLYQTYGADFKYLLSLQ-NKIRLKKYTEDL 346 Query: 347 FRQAIEHGWEPEQIKSLYLRVFLDMSHTVIXXXXXXXXXXXXXXXXXXCQTFGSVHDTTC 406 F + ++ +K L R+ +DM C TF S+ T Sbjct: 347 FSRLESTKYDSNSVKQLLRRLEIDM------------RLFLEKYQINLC-TF-SLDGDTF 392 Query: 407 AYFHKL---------QQLQEGGKK-----IDSSISRIIQHMREDLSYPYKLEELAASMNY 452 +F K+ +QL + K I ++ I H+ E+++ + +++ +N Sbjct: 393 DHFKKIFFDMIDCMFEQLSKPENKSSRPEIKKVLAYISTHIGEEIT----CDNMSSYINM 448 Query: 453 SVPYFSSMFKKAVGESFVQYLTRLRIEKAKLLLLTTDHKTFEISESIGFENYRSFNRIFK 512 + YFS +FK +G SF +YL RI A LL +D EIS +GFE+ F+R +K Sbjct: 449 NSNYFSRLFKNEMGVSFSEYLLNKRIHIATELLKNSDCPIHEISRIVGFESPSYFHRAYK 508 Query: 513 KETGVSPSDYR 523 K TG++P D R Sbjct: 509 KVTGITPGDAR 519 >A6LXG2.1 A6LXG2_CLOB8 Response regulator receiver protein Length = 463 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 121/487 (24%), Positives = 212/487 (43%), Gaps = 39/487 (8%) Query: 1 VEDEIPARTVFRHFIEERGDLFTLVGEAEDGQDGLELFLKHKPELIVTDITMPGMNGLEM 60 VEDEI AR + + + + + + G+A DG+ G L ++KP+LI TDI MP +NGL+M Sbjct: 6 VEDEINAREGLGNLLGKINENYIVCGKALDGEQGFLLAKEYKPDLIFTDIEMPKINGLDM 65 Query: 61 LREIEKSGERPPQIIILTCHQDFHYAQQAIHLKAASYLIKDDCLSDPGLLTRTMEQLASQ 120 L++I+ G+ P IIIL+ + DF YAQ+ I L YL+K + L TME + + Sbjct: 66 LQKIKDCGQ-DPYIIILSGYSDFKYAQKGIKLGVKEYLLKPITYT---ALKNTMEDIEKK 121 Query: 121 VHSIDETREKQLQLEQQVRLSEVEIEQSLFLDMLLNPAAEAKWLRTLEESQLPVQEGRFK 180 ++ ++EK LE+ + +++ + +LLN + + ES++ E + Sbjct: 122 LNL---SKEKDELLEEGI------LKEEILGQVLLNKGQNLEHFYKIIESKVKQNENIYV 172 Query: 181 VLLLELDR--GSLRFPIGQIEELKLWQFAGVNVLKELLGGIGAHKVIALDKGRFLAVYTD 238 + L D+ + F I +I E + + VN +L ++ + K +L + Sbjct: 173 INLHLRDKYEDKIEFIIKEIYE-AMKNYHIVNFYYSILKEYNYLPILVITKTAYLE-FIK 230 Query: 239 ALK------LERPGFLEQVLESFAANLKMKCFALQCRFEQGLRGRPEALKRLASAPYPFF 292 LK L + GFL + N + ++ F++ L+RL+ P F Sbjct: 231 MLKHKLLFSLRQKGFLNTTISIINLN---ELAEIKNSFKK--------LQRLSRWPISF- 278 Query: 293 YRSDESIAIEEWEQFAFFQRIPEPVSRFWSKVLKKALLEPHLSAAALEQERSSLFRQAIE 352 + + EE P ++VLK A + ++ S ++ I Sbjct: 279 --GNNEVIHEELISKLKINHCSYP-RELENEVLKAIKNNDQKKLADINEKFISYLKENIY 335 Query: 353 HGWEPEQIKSLYLRVFLDMSHTVIXXXXXXXXXXXXXXXXXXCQTFGSVHDTTCAYFHKL 412 E + S Y+ L ++ + TF + + + Sbjct: 336 DPCEIIDVSSRYIFSILTVAKSCNSNLYTEFNNEGVLDSIKNSFTFDELKERLNYIIRNM 395 Query: 413 QQLQEGGKKIDSSISR-IIQHMREDLSYPYKLEELAASMNYSVPYFSSMFKKAVGESFVQ 471 + + K++S I R I +++E S LEE+A+ MN + Y S +F K +G+SF Sbjct: 396 CKRNDDETKVNSLIVRKAINYIKEYYSDKISLEEIASGMNITPEYLSRLFTKELGKSFSD 455 Query: 472 YLTRLRI 478 YL RI Sbjct: 456 YLKEFRI 462 >A7VQN0.1 A7VQN0_9CLOT Putative uncharacterized protein Length = 513 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 54/136 (39%), Positives = 88/136 (64%), Gaps = 6/136 (4%) Query: 1 VEDEIPARTVFRHFIEERGDLFTLVGEAEDGQDGLELFLKHKPELIVTDITMPGMNGLEM 60 VEDEI R +E + +VGEAE+G+ GLEL L KP+L++TD+ MP M+GLEM Sbjct: 6 VEDEIRIREGLMKLLERIDQNYQVVGEAENGKAGLELILDSKPDLVITDVQMPIMDGLEM 65 Query: 61 LREIEKSGERP-PQIIILTCHQDFHYAQQAIHLKAASYLIKDDCLSDPGLLTRTMEQLAS 119 LR +++ ++P P++IIL+ + +F YAQQAI L + YLIK +++ LT+ + + Sbjct: 66 LRCLQE--KQPLPKVIILSAYSEFSYAQQAIKLGVSEYLIKPIMVNE---LTQALRMVEQ 120 Query: 120 QVHSIDETREKQLQLE 135 Q+ + + +E+ +L+ Sbjct: 121 QLKTKGKKKEELPELD 136 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 34/82 (41%), Positives = 53/82 (64%) Query: 443 LEELAASMNYSVPYFSSMFKKAVGESFVQYLTRLRIEKAKLLLLTTDHKTFEISESIGFE 502 L+E+A + + Y S F K VG +F Y+ RI+KAK LL+ T+ K +EI+E +G+ Sbjct: 429 LDEIAEKLKVTPEYLGSQFHKEVGITFSAYIKEYRIQKAKKLLIGTELKLYEIAEKVGYS 488 Query: 503 NYRSFNRIFKKETGVSPSDYRR 524 + F++IFK+ TG P+DYR+ Sbjct: 489 TPKYFSKIFKEVTGQLPADYRK 510 >A6M1R0.1 A6M1R0_CLOB8 Response regulator receiver protein Length = 538 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 55/136 (40%), Positives = 84/136 (61%), Gaps = 6/136 (4%) Query: 396 QTFGSVHDTTCAYFHKLQQLQEGGKK--IDSS---ISRIIQHMREDLS-YPYKLEELAAS 449 ++F S+H+ K ++ K+ I+SS I + Q+++E+ S Y +E+L + Sbjct: 403 ESFNSIHEVKKWIIEKAIRINSYIKRERINSSMMLIEKAKQYIKENYSDYDVSVEKLCSK 462 Query: 450 MNYSVPYFSSMFKKAVGESFVQYLTRLRIEKAKLLLLTTDHKTFEISESIGFENYRSFNR 509 ++ S YFS+MFKK G SFV YLT R+E+A LL TTD KT+ I+E +G+ F+ Sbjct: 463 LHVSPTYFSTMFKKETGTSFVNYLTATRLEEAVKLLNTTDDKTYMIAEKVGYPEANYFSY 522 Query: 510 IFKKETGVSPSDYRRN 525 +FKK+ GVSPS YR+N Sbjct: 523 VFKKQFGVSPSKYRKN 538 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 66/235 (28%), Positives = 112/235 (47%), Gaps = 19/235 (8%) Query: 1 VEDEIPARTVFRHFIEERGDLFTLVGEAEDGQDGLELFLKHKPELIVTDITMPGMNGLEM 60 V+DE R I+ + F +VG+AE+GQD LE K +P++I+TDI MP M+GLE+ Sbjct: 9 VDDEEEIRLGIIKKIDWEANGFIVVGDAENGQDALEKAEKLQPDVIMTDIKMPFMDGLEL 68 Query: 61 LREIEKSGERPP--QIIILTCHQDFHYAQQAIHLKAASYLIKD-DCLSDPGLLTRTMEQL 117 + K E P +II+ + DF YA +AI + Y++K + +L R EQL Sbjct: 69 GK---KLVELMPSTKIIVFSGCDDFEYAHKAIKINVVEYVLKPINSAELIEVLVRLKEQL 125 Query: 118 ASQVHSIDETREKQLQLEQQVRLSEVEIEQSLFLDMLLNPAAEAKWLRTLEESQLPVQEG 177 + +E R + + ++ V I + + + E +W +EE + + Sbjct: 126 DREY---NEKRNLETLYKHYIKSLPV-IREQFLVGAIEGRINEEQWHEQMEELGIEFKYK 181 Query: 178 RFKVLLLELDRGSLRFPIGQIEELKLWQFAGVNVLKELLGGIGAHKVIALDKGRF 232 V +++ D G+L F E L F+G + L I K++ + G++ Sbjct: 182 HLTVGIIQAD-GTLSF------EENLNSFSGQK--ESALTPISIKKIVDENMGKY 227 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.395 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,919,940,932 Number of extensions: 114227775 Number of successful extensions: 356763 Number of sequences better than 1.0e-05: 5849 Number of HSP's gapped: 363374 Number of HSP's successfully gapped: 6348 Length of query: 531 Length of database: 3,060,696,203 Length adjustment: 141 Effective length of query: 390 Effective length of database: 1,732,333,088 Effective search space: 675609904320 Effective search space used: 675609904320 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)