BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0014.p (441 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B4ANQ3.1 B4ANQ3_BACPU Lipoprotein LplA 150 3e-34 A8FGF6.1 A8FGF6_BACP2 ABC superfamily ATP binding cassette trans... 147 2e-33 P37966.1 LIPO_BACSU Lipoprotein lplA 144 1e-32 Q65FY5.1 Q65FY5_BACLD YtcQ 141 1e-31 Q795R2.2 YTCQ_BACSU Putative ABC transporter peptide-binding pro... 137 2e-30 >B4ANQ3.1 B4ANQ3_BACPU Lipoprotein LplA Length = 498 Score = 150 bits (378), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 102/303 (33%), Positives = 157/303 (51%), Gaps = 27/303 (8%) Query: 96 QKASIKAMTILFGNPPATENNKALEDLEKRGNVDLDVTFVPSEAYTDKLSVAVSAGNSYX 155 +K + M IL+ P ++ L+++EK N +LD+T+VP D+L+ A++AGN Sbjct: 39 KKVKLTWMAILYHQQPPKDS--VLKEIEKLTNTELDITWVPDAVKEDRLNSALAAGNLPQ 96 Query: 156 XXXXXXXXXXXFSNLVKMGAFHDLTPYIEKTKNISQIDDTVWNGIKVDGKLYGIPRPRGL 215 N + G F ++ PY++ N+S++++ + +DGKLYGI R R L Sbjct: 97 IVTIQDIKNSSAINAFRSGMFWEVGPYLKDYPNLSKMNELINKNASIDGKLYGIYRERPL 156 Query: 216 YGGGEANILIRKDWLDKYNLAVPKTMDELTNALAVFKEKDPAGGGK--TIPFS-----IY 268 G I+IRKDWL+ NL PKT+D+L F EKDP GK TI F+ IY Sbjct: 157 SRQG---IVIRKDWLENLNLDTPKTLDDLYEVAKAFTEKDPNQNGKADTIGFTDRNDLIY 213 Query: 269 AVDGINSPGPFAGVAPIQFAFGVPNIWKLDNGKAVRDFQTPEYKAFLEWLKDSWSKGLID 328 G F + + G+P WK DNGK DF T EY ++++K G I+ Sbjct: 214 --------GAFKTLGSYE---GMPTDWKEDNGKFTPDFMTDEYMNTMKYMKKLRDNGYIN 262 Query: 329 KDAPVLKNQGQARSKFLAGTAGAFVGNVSDMAETNIEKLKQTDPNAEIAIVDVLEGANGQ 388 KD PV ++ Q + F G AG +VGN+ D + TD N ++ I++ ++G +G+ Sbjct: 263 KDFPVT-SKTQQQELFSQGKAGIYVGNMVDAVNLRDD---ATDKNMKVDILNRIKGPDGK 318 Query: 389 KGV 391 + V Sbjct: 319 ERV 321 >A8FGF6.1 A8FGF6_BACP2 ABC superfamily ATP binding cassette transporter, binding protein Length = 499 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 101/303 (33%), Positives = 156/303 (51%), Gaps = 27/303 (8%) Query: 96 QKASIKAMTILFGNPPATENNKALEDLEKRGNVDLDVTFVPSEAYTDKLSVAVSAGNSYX 155 +K + M IL+ P ++ L+++EK N +LD+T+VP D+L+ A++AGN Sbjct: 40 KKVKLTWMAILYHQQPPKDS--VLKEIEKLTNTELDITWVPDAVKEDRLNSALAAGNLPQ 97 Query: 156 XXXXXXXXXXXFSNLVKMGAFHDLTPYIEKTKNISQIDDTVWNGIKVDGKLYGIPRPRGL 215 N + G F ++ PY++ N+S+++ + +DGKLYGI R R L Sbjct: 98 IVTIQDIKNSSAINAFRSGMFWEVGPYLKDYPNLSKMNKLINKNASIDGKLYGIYRERPL 157 Query: 216 YGGGEANILIRKDWLDKYNLAVPKTMDELTNALAVFKEKDPAGGGK--TIPFS-----IY 268 G I+IRKDWL+ NL PKT+D+L F EKDP GK TI F+ IY Sbjct: 158 SRQG---IVIRKDWLENLNLDTPKTLDDLYEVAKAFTEKDPNQNGKADTIGFTDRNDLIY 214 Query: 269 AVDGINSPGPFAGVAPIQFAFGVPNIWKLDNGKAVRDFQTPEYKAFLEWLKDSWSKGLID 328 G F + + G+P WK +NGK DF T EY ++++K G I+ Sbjct: 215 --------GAFKTLGSYE---GMPTDWKEENGKFTPDFMTDEYMNTMKYMKKLRDNGYIN 263 Query: 329 KDAPVLKNQGQARSKFLAGTAGAFVGNVSDMAETNIEKLKQTDPNAEIAIVDVLEGANGQ 388 KD PV ++ Q + F G AG +VGN+ D + TD N ++ I++ ++G +G+ Sbjct: 264 KDFPVT-SKTQQQELFSQGKAGIYVGNMVDAVNLRDD---ATDKNMKVDILNRIKGPDGK 319 Query: 389 KGV 391 + V Sbjct: 320 ERV 322 >P37966.1 LIPO_BACSU Lipoprotein lplA Length = 502 Score = 144 bits (364), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 99/306 (32%), Positives = 163/306 (53%), Gaps = 14/306 (4%) Query: 88 TAKTEAGSQKASIKAMTILFGNPPATENNKALEDLEKRGNVDLDVTFVPSEAYTDKLSVA 147 T+ + +GS K +IK M L ++ + +L+ LEK ++ VT+VP +Y DK ++ Sbjct: 27 TSNSASGS-KDTIKIMAPLLSPESPSDKSPSLKALEKYTGKEIKVTWVPDSSYNDKFNIV 85 Query: 148 VSAGNSYXXXXXXXXXXXXFSNLVKMGAFHDLTPYIEKTKNISQIDDTVWNGIKVDGKLY 207 +++G F VK GAF +L+PY++ KN+SQ D+ + V+G++Y Sbjct: 86 MASG-EMPHAIVIKDKSAGFIKSVKAGAFWELSPYLKDYKNLSQADEKILKNSSVNGEVY 144 Query: 208 GIPRPRGLYGGGEANILIRKDWLDKYNLAVPKTMDELTNALAVFKEKDPAGGGKTIPFSI 267 GI R R L A ++IR DWL L +P+T+D+ L FKEKDP G GK + + Sbjct: 145 GIYRTRDLI---RACMIIRTDWLKNVGLDMPETLDDFYEVLKAFKEKDPDGNGKDDTYGM 201 Query: 268 YAVD--GINSPGPFAGVAPIQFAFGVPNIWKLDNGKAVRDFQTPEYKAFLEWLKDSWSKG 325 G+ + P+ +Q FG PN + ++NGK + DF T EY L + K + +G Sbjct: 202 VVPKWMGLGNGSPW---DVLQIWFGAPNRYGVENGKLIPDFTTKEYMDALTFFKKLYDEG 258 Query: 326 LIDKDAPVLKNQGQARSKFLAGTAGAFV--GNVSDMAETNIEKLKQTDPNAEIAIVDVLE 383 LI+KD V+ + + + G AG V G+ + ++ +E+ +++ + I IV LE Sbjct: 259 LINKDFAVM-DSAKWNDPVVKGKAGVIVDTGSRASQIQSAMEEADESNKDI-IDIVGSLE 316 Query: 384 GANGQK 389 G NG++ Sbjct: 317 GPNGKR 322 >Q65FY5.1 Q65FY5_BACLD YtcQ Length = 501 Score = 141 bits (355), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 97/296 (32%), Positives = 150/296 (50%), Gaps = 27/296 (9%) Query: 103 MTILFGNPPATENNKALEDLEKRGNVDLDVTFVPSEAYTDKLSVAVSAGNSYXXXXXXXX 162 M IL+ P + A++ +E+ N LD+ +VP D+L+ A++AGN Sbjct: 48 MVILYHQQPPKDT--AIKKIEELTNTKLDLMWVPDAVKEDRLNSALAAGNLPKVVTIQDI 105 Query: 163 XXXXFSNLVKMGAFHDLTPYIEKTKNISQIDDTVWNGIKVDGKLYGIPRPRGLYGGGEAN 222 N + G F ++ PY++ N+S+++ + +DGKLYGI R R L G Sbjct: 106 KNSSVMNAFRSGMFWEVGPYLKDYPNLSKMNKLINKNASIDGKLYGIYRERPLSRQG--- 162 Query: 223 ILIRKDWLDKYNLAVPKTMDELTNALAVFKEKDPAGGGK--TIPFS-----IYAVDGINS 275 I+IRKDWLD L +PKT+DEL F EKDP GK TI F+ IY Sbjct: 163 IVIRKDWLDNLGLDMPKTVDELYETAKAFTEKDPDQNGKNDTIGFADRNDLIY------- 215 Query: 276 PGPFAGVAPIQFAFGVPNIWKLDNGKAVRDFQTPEYKAFLEWLKDSWSKGLIDKDAPVLK 335 G F + G+P W+ +GK DF T EY ++++K + +GLI+KD PV Sbjct: 216 -GAFKTLGSY---MGMPTDWEEKDGKFTPDFMTKEYMDTMKYMKKLYDEGLINKDFPV-T 270 Query: 336 NQGQARSKFLAGTAGAFVGNVSDMAETNIEKLKQTDPNAEIAIVDVLEGANGQKGV 391 ++ Q + F G AG +VGN+ D + + D E+ I++ ++G +G++ V Sbjct: 271 SKTQQQEMFSQGKAGIYVGNMVDAVNL---RDQSVDDKMELEIINRIKGPDGKERV 323 >Q795R2.2 YTCQ_BACSU Putative ABC transporter peptide-binding protein ytcQ Length = 498 Score = 137 bits (345), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 96/309 (31%), Positives = 159/309 (51%), Gaps = 14/309 (4%) Query: 84 SPEGTAKTEAG-SQKASIKAMTILFGNPPATENNKALEDLEKRGNVDLDVTFVPSEAYTD 142 + + +A+ +AG K + M IL+ P ++A++++EK N +LD+T+VP D Sbjct: 26 TDQSSAEGKAGPDSKVKLSWMAILYHQQPP--KDRAIKEIEKLTNTELDITWVPDAVKED 83 Query: 143 KLSVAVSAGNSYXXXXXXXXXXXXFSNLVKMGAFHDLTPYIEKTKNISQIDDTVWNGIKV 202 +L+ A++AGN N + G F ++ YI+ N+++++ + + + Sbjct: 84 RLNAALAAGNLPQIVTIQDIKNSSVMNAFRSGMFWEIGDYIKDYPNLNKMNKLINKNVTI 143 Query: 203 DGKLYGIPRPRGLYGGGEANILIRKDWLDKYNLAVPKTMDELTNALAVFKEKDPAGGGKT 262 DGKLYGI R R L G I+IRKDWLD NL PKT+DEL F E DP GK Sbjct: 144 DGKLYGIYRERPLSRQG---IVIRKDWLDNLNLKTPKTLDELYEVAKAFTEDDPDKDGKD 200 Query: 263 IPFSIYAVDGINSPGPFAGVAPIQFAFGVPNIWKLDNGKAVRDFQTPEYKAFLEWLKDSW 322 F + + + G F + + G+P WK GK DF T EYK + ++K Sbjct: 201 DTFGLADRNDL-IYGAFKTIGSYE---GMPTDWKESGGKFTPDFMTQEYKDTMNYMKKLR 256 Query: 323 SKGLIDKDAPVLKNQGQARSKFLAGTAGAFVGNVSDMAETNIEKLKQTDPNAEIAIVDVL 382 G ++KD PV ++ Q + F G AG ++GN+ D + +D + ++ I++ + Sbjct: 257 DNGYMNKDFPVT-SKTQQQELFSQGKAGIYIGNMVDAVNL---RDHASDKSMKLEIINRI 312 Query: 383 EGANGQKGV 391 +G +G++ V Sbjct: 313 KGPDGKERV 321 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.135 0.406 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,566,054,396 Number of extensions: 107175769 Number of successful extensions: 205447 Number of sequences better than 1.0e-05: 264 Number of HSP's gapped: 205350 Number of HSP's successfully gapped: 264 Length of query: 441 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 302 Effective length of database: 1,751,175,118 Effective search space: 528854885636 Effective search space used: 528854885636 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)