BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0011.p (289 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value P39129.1 LPLC_BACSU Protein lplC 252 3e-65 B1DBB6.1 B1DBB6_9BACL Binding-protein-dependent transport system... 249 2e-64 Q65KX4.1 Q65KX4_BACLD Transmembrane lipoprotein 248 3e-64 Q2BFC2.1 Q2BFC2_9BACI Transmembrane lipoprotein 248 3e-64 Q9KFJ8.1 Q9KFJ8_BACHD ABC transporter (Permiase) 244 5e-63 >P39129.1 LPLC_BACSU Protein lplC Length = 295 Score = 252 bits (643), Expect = 3e-65, Method: Compositional matrix adjust. Identities = 127/273 (46%), Positives = 182/273 (66%), Gaps = 22/273 (8%) Query: 26 PFLYIIAVSFSPPGDSLAGNFFIWPKHWTLDAYSYLLNADTFLTSVRNSVVITVMGTLLS 85 PFLYIIA SF+ + +FFI+PK +TLDAY Y+ + TFL S+ S+ ITV+GT + Sbjct: 34 PFLYIIAGSFATEAELAQRSFFIFPKTFTLDAYKYVFSTPTFLRSMGVSIFITVVGTAVQ 93 Query: 86 LFVSITLAYALSKKFLPGRRXXXXXXXXXXXXHGGMIPSYLVVKNLGLIDSYWAVVLPAA 145 LF + T+AY L+K+ + GR GGMIP+YLVVK+LGL+D+YWA++LP A Sbjct: 94 LFFTFTMAYPLAKRHVKGRNLLLNLVIFSMLFSGGMIPTYLVVKSLGLLDTYWALILPMA 153 Query: 146 SSAFNIMVIRSFFQSLPESLDEAARIDGAGEFRILYSIVLPLSKPIIATFTLFFMVQFWN 205 + FN+++I++FFQ LP L+E+A+IDG E + + I LPLSKP+IATF LF+ V WN Sbjct: 154 INPFNLIIIKNFFQQLPRELEESAKIDGCSEIGVFWRIALPLSKPVIATFALFYAVGIWN 213 Query: 206 EFFSAVIYLNDTSRWPIQPLLRQMVXXXXXXXXXXXXVDAQLAANLGPNVQN-------- 257 +FF A++Y+ND+++WP+Q +LRQ+ + + L A G +QN Sbjct: 214 DFFHALLYINDSAKWPLQMVLRQVT------------ILSDLTATNGDTMQNAVPPEQGI 261 Query: 258 --AAILLAMLPIVIVYPFLQKYFAKGAMLGSIK 288 A I++A LPI+ VYPFLQK+FAKG ++GS+K Sbjct: 262 KLAVIVIATLPILAVYPFLQKHFAKGMLIGSVK 294 >B1DBB6.1 B1DBB6_9BACL Binding-protein-dependent transport systems inner membrane component Length = 294 Score = 249 bits (636), Expect = 2e-64, Method: Compositional matrix adjust. Identities = 122/283 (43%), Positives = 182/283 (64%) Query: 6 TWFDXXXXXXXXXXXXXXXXPFLYIIAVSFSPPGDSLAGNFFIWPKHWTLDAYSYLLNAD 65 T FD PF+YIIA SF+ + F+ P +T AY ++ + D Sbjct: 11 TAFDISNAIVLSVISLLAVLPFIYIIAGSFASDAELTKRAVFLIPSTFTTAAYQFIFSTD 70 Query: 66 TFLTSVRNSVVITVMGTLLSLFVSITLAYALSKKFLPGRRXXXXXXXXXXXXHGGMIPSY 125 T L S++ S+ +TV+GT ++LF ++T+AYALSK+ L GR GG+IP+Y Sbjct: 71 TILQSIKVSLYVTVVGTAVNLFFTVTMAYALSKRNLMGRNTVLNLIVFSMLFGGGLIPTY 130 Query: 126 LVVKNLGLIDSYWAVVLPAASSAFNIMVIRSFFQSLPESLDEAARIDGAGEFRILYSIVL 185 LVV++L L+DS+WA++LP A SAFN++++++FFQ LP L+EAARIDG E +L+ IVL Sbjct: 131 LVVRDLHLLDSFWALMLPGAISAFNLIIVKNFFQELPAELEEAARIDGCTELGLLWKIVL 190 Query: 186 PLSKPIIATFTLFFMVQFWNEFFSAVIYLNDTSRWPIQPLLRQMVXXXXXXXXXXXXVDA 245 PLS P++ATFTLF+ V WN F+SA++Y+ND +WP+Q +LRQ+V +D Sbjct: 191 PLSMPVLATFTLFYAVGHWNNFYSALLYINDPQKWPLQVMLRQIVLLSQTAAGDINSMDP 250 Query: 246 QLAANLGPNVQNAAILLAMLPIVIVYPFLQKYFAKGAMLGSIK 288 A +++ A I++ +PI++VYPFLQK+FAKG ++GS+K Sbjct: 251 NFVAPPDQSIKMAVIVIGTIPILLVYPFLQKHFAKGVLIGSVK 293 >Q65KX4.1 Q65KX4_BACLD Transmembrane lipoprotein Length = 294 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 121/263 (46%), Positives = 181/263 (68%), Gaps = 3/263 (1%) Query: 26 PFLYIIAVSFSPPGDSLAGNFFIWPKHWTLDAYSYLLNADTFLTSVRNSVVITVMGTLLS 85 PFLYIIA SF+ + +FFI+P+ ++LDAY Y+ + TF+ S+ SV+ITV+GT++ Sbjct: 34 PFLYIIAGSFATEAELAERSFFIFPETFSLDAYRYIFSTPTFIRSMGVSVLITVVGTIVQ 93 Query: 86 LFVSITLAYALSKKFLPGRRXXXXXXXXXXXXHGGMIPSYLVVKNLGLIDSYWAVVLPAA 145 LF + T+AY L+K+ + GR GGMIP+Y+VVK+LGL+DSYWA++LP A Sbjct: 94 LFFTFTMAYPLAKRHIKGRNLLLNLVIFAMLFSGGMIPTYIVVKSLGLLDSYWALILPMA 153 Query: 146 SSAFNIMVIRSFFQSLPESLDEAARIDGAGEFRILYSIVLPLSKPIIATFTLFFMVQFWN 205 + FN+++I++FFQ LP+ L+E+A+IDG E + I LPLSKPIIATF LF+ V WN Sbjct: 154 INPFNLIIIKNFFQQLPKELEESAKIDGCSEIGVFLRIALPLSKPIIATFALFYAVGIWN 213 Query: 206 EFFSAVIYLNDTSRWPIQPLLRQMVXXXXXXXXXXXXVDAQLAANLGPNVQNAAILLAML 265 +FF A++Y+ND+++WP+Q +LRQ+ ++ +++ A I++A L Sbjct: 214 DFFHALLYINDSAKWPLQMVLRQVTILSDLTGTTNDMMETVPPEQ---SIKLAVIVIATL 270 Query: 266 PIVIVYPFLQKYFAKGAMLGSIK 288 PI+ VYPFLQK+FAKG ++GS+K Sbjct: 271 PILAVYPFLQKHFAKGILIGSVK 293 >Q2BFC2.1 Q2BFC2_9BACI Transmembrane lipoprotein Length = 290 Score = 248 bits (634), Expect = 3e-64, Method: Compositional matrix adjust. Identities = 125/265 (47%), Positives = 177/265 (66%), Gaps = 6/265 (2%) Query: 26 PFLYIIAVSFSPPGDSLAGNFFIWPKHWTLDAYSYLLNADTFLTSVRNSVVITVMGTLLS 85 PF+YI AVSFS D L + +WPK W DAY Y+L +D F+ S+ ++ ITV+GT ++ Sbjct: 29 PFIYIFAVSFSSLSDFLENDLLLWPKEWVTDAYEYILGSDQFIRSLFVTIYITVIGTFIN 88 Query: 86 LFVSITLAYALSKKFLPGRRXXXXXXXXXXXXHGGMIPSYLVVKNLGLIDSYWAVVLPAA 145 LF + T+AYAL++K + G+R GMIP+Y++VK GL+++ WA+++P A Sbjct: 89 LFFTSTMAYALTRK-IHGQRMILFLVLFTMLFSAGMIPTYMIVKATGLLNTLWALIIPVA 147 Query: 146 SSAFNIMVIRSFFQSLPESLDEAARIDGAGEFRILYSIVLPLSKPIIATFTLFFMVQFWN 205 S FN++++R FFQ +PE L EAA IDGA + +I I+LPLSKP +A F LF+ V WN Sbjct: 148 ISPFNLIIMRQFFQGIPEELTEAAIIDGANDLQIFTKIILPLSKPALAAFGLFYAVSHWN 207 Query: 206 EFFSAVIYLNDTSRWPIQPLLRQMVXXXXXXXXXXXXVDAQLAANLGP--NVQNAAILLA 263 +F+ V+YL+D ++WPIQ +LRQ+V ++ +L P VQ AAILLA Sbjct: 208 SYFTGVLYLSDPAKWPIQVILRQIVIVNEPNAALGAH---EMMESLPPPETVQMAAILLA 264 Query: 264 MLPIVIVYPFLQKYFAKGAMLGSIK 288 +PI+IVYPFLQK+FAKG MLGS+K Sbjct: 265 TIPILIVYPFLQKHFAKGVMLGSVK 289 >Q9KFJ8.1 Q9KFJ8_BACHD ABC transporter (Permiase) Length = 293 Score = 244 bits (624), Expect = 5e-63, Method: Compositional matrix adjust. Identities = 116/263 (44%), Positives = 179/263 (68%) Query: 26 PFLYIIAVSFSPPGDSLAGNFFIWPKHWTLDAYSYLLNADTFLTSVRNSVVITVMGTLLS 85 PF++I+A SF+ + L F ++P ++LDAY Y+ + D S+ S+++TV+GT S Sbjct: 30 PFVHIVAGSFASVEEVLQKRFILFPTTFSLDAYRYIFSTDIIFRSLIISILVTVVGTGFS 89 Query: 86 LFVSITLAYALSKKFLPGRRXXXXXXXXXXXXHGGMIPSYLVVKNLGLIDSYWAVVLPAA 145 +F++ +AY LS+K L GRR GGMIP++LVV++LGL+D+YWA+++P A Sbjct: 90 MFLTSLMAYGLSRKDLDGRRVLMFLVVFTMLFSGGMIPTFLVVRSLGLLDTYWALIIPTA 149 Query: 146 SSAFNIMVIRSFFQSLPESLDEAARIDGAGEFRILYSIVLPLSKPIIATFTLFFMVQFWN 205 +AFN++++++FFQ++PESL+E+A+IDG + I + IV PLS P IAT +LF+ V +WN Sbjct: 150 INAFNLIILKNFFQNIPESLEESAKIDGCNDVGIFFRIVFPLSMPAIATISLFYAVTYWN 209 Query: 206 EFFSAVIYLNDTSRWPIQPLLRQMVXXXXXXXXXXXXVDAQLAANLGPNVQNAAILLAML 265 F A++YLND+S WPIQ LLRQ+V + A ++ A I++A + Sbjct: 210 TFMQAILYLNDSSMWPIQVLLRQIVIMSSGMQGDLTELGAGFVMPPEQTIKMAVIVVATI 269 Query: 266 PIVIVYPFLQKYFAKGAMLGSIK 288 P++IVYPF+QK+FAKGA+LGS+K Sbjct: 270 PVLIVYPFIQKHFAKGALLGSVK 292 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.141 0.431 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,382,636,398 Number of extensions: 47396663 Number of successful extensions: 175317 Number of sequences better than 1.0e-05: 5710 Number of HSP's gapped: 166559 Number of HSP's successfully gapped: 5711 Length of query: 289 Length of database: 3,060,696,203 Length adjustment: 134 Effective length of query: 155 Effective length of database: 1,798,280,193 Effective search space: 278733429915 Effective search space used: 278733429915 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 130 (54.7 bits)