BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0009.p (377 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4CNZ7.1 C4CNZ7_9CHLR Putative uncharacterized protein 351 7e-95 B3KH07.1 B3KH07_9BACI Putative uncharacterized protein 346 2e-93 B9XBD4.1 B9XBD4_9BACT Putative uncharacterized protein 314 8e-84 B4D793.1 B4D793_9BACT Putative uncharacterized protein 283 1e-74 C0U6M7.1 C0U6M7_9ACTO Putative uncharacterized protein 267 1e-69 >C4CNZ7.1 C4CNZ7_9CHLR Putative uncharacterized protein Length = 359 Score = 351 bits (900), Expect = 7e-95, Method: Compositional matrix adjust. Identities = 177/354 (50%), Positives = 232/354 (65%), Gaps = 1/354 (0%) Query: 12 STNIAHRRLANQLINSPDSFEPEEVVRRLGALQAQDYLQAVWAVGLRTPSATLAGVERAI 71 S + RL +Q I P +P EVVR LGA+QAQ+Y QA+WA+G+RT TLA VE+A+ Sbjct: 3 SPTLGRLRLYSQRITGPAFADPAEVVRWLGAIQAQEYQQALWAIGVRTQGVTLADVEQAL 62 Query: 72 AEGKIVLTWILRGTIHCVPPEDVKWLLQLSGPRLLKQAVRRMAQLELDERTLERSKEIIY 131 AEG+IV TW +RGT+H VP ED W+L L+ R + + R+AQLELD+ TL + ++ Sbjct: 63 AEGRIVRTWPMRGTLHFVPAEDAHWMLMLTASRAVARHRGRLAQLELDDETLACAADVFR 122 Query: 132 NALTNGGIIRRPDMLALLEGEGIRTDGQRGYHILWHSAYSGLICFGPRSGKQQTFVLLDK 191 AL G + RP ML +LEG GIRT+GQRGYHILW+ +++G++C GP G+ QTFVLLD+ Sbjct: 123 AALAGGRRLSRPAMLQVLEGAGIRTEGQRGYHILWYLSHTGVLCPGPLDGRTQTFVLLDE 182 Query: 192 WVEHXXXXXXXXXXXXXXXRYFTAHGPATVKDLAWWAGITLTEARAGLDAVKSELIAETI 251 WV RYF +HGPATV D AWW+G+T+ +ARAGL AV+++L + Sbjct: 183 WVPQSRDLSREEALATLAGRYFASHGPATVHDFAWWSGLTVADARAGLAAVQADLTPIEV 242 Query: 252 TGTEYWMPAAPAAETQFPSKEVHLLPGFDEYILGYNDRSAVLEPETAPRIVPGNNGVFLP 311 GT YWM A E + LLPGFDEY+LGY DRSAVL E +VPG NG+FLP Sbjct: 243 DGTTYWMAADTPREVADEPVGIVLLPGFDEYLLGYKDRSAVLPKEHVDGVVPGQNGMFLP 302 Query: 312 TIAAGGQILGTWKRTVKPKGVELNFSPFEPLEHKWEEKLMQAAERYAAFLGLPV 365 + GQ++GTW+R VK VE+ F+PF P + + + AERY AFLGLPV Sbjct: 303 MVVVDGQVVGTWRRQVKKTTVEVTFNPFVPGDEV-DAWAGEPAERYGAFLGLPV 355 >B3KH07.1 B3KH07_9BACI Putative uncharacterized protein Length = 359 Score = 346 bits (887), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 176/358 (49%), Positives = 229/358 (63%), Gaps = 4/358 (1%) Query: 11 MSTNIAHRRLANQLINSPDSFEPEEVVRRLGALQAQDYLQAVWAVGLRTPSATLAGVERA 70 +S IA++RL NQ I P EVVR LGA+QAQDY QAVW +GLRT SA ++ VE+A Sbjct: 2 LSHTIANQRLYNQRITGMKHVSPVEVVRELGAVQAQDYHQAVWGIGLRTQSAKISDVEQA 61 Query: 71 IAEGKIVLTWILRGTIHCVPPEDVKWLLQLSGPRLLKQAVRRMAQLELDERTLERSKEII 130 + + KIVLTW +RGTI VP ED KW+L+L+ R ++ A+LELDE TL + II Sbjct: 62 VIDRKIVLTWPMRGTIFFVPAEDAKWMLRLTASRFQTHDKKKQAELELDEGTLHQCGTII 121 Query: 131 YNALTNGGIIRRPDMLALLEGEGIRTDGQRGYHILWHSAYSGLICFGPRSGKQQTFVLLD 190 NAL + RP ++ LLE GI T RGY+IL + +G+ICFGP GKQQ+FVLLD Sbjct: 122 GNALRGCLPVSRPRLMELLEEAGISTKNGRGYYILGYLGRTGMICFGPHEGKQQSFVLLD 181 Query: 191 KWVEHXXXXXXXXXXXXXXXRYFTAHGPATVKDLAWWAGITLTEARAGLDAVKSELIAET 250 +WV + RYFT HGPATV+D AWW G+TLTEA+ G +AV+S L + Sbjct: 182 EWVPNSRELSLEESLAELALRYFTGHGPATVQDFAWWVGLTLTEAKRGFEAVQSNLRLDF 241 Query: 251 ITGTEYWMP-AAPAAETQFPSKEVHLLPGFDEYILGYNDRSAVLEPETAPRIVPGNNGVF 309 + GTEYW P+A S LLPGFDEY LGY DRSA++E E +I P NGVF Sbjct: 242 VNGTEYWSSVTGPSASADTDS--AVLLPGFDEYYLGYKDRSAIIESEHDAKIAPFRNGVF 299 Query: 310 LPTIAAGGQILGTWKRTVKPKGVELNFSPFEPLEHKWEEKLMQAAERYAAFLGLPVLK 367 P + AGG+++G WKR +K G+E+ SPF L + EE +AA+ Y+ F+GLP+ + Sbjct: 300 QPIMVAGGEVVGIWKREIKRSGIEITLSPFSALGDR-EEAFREAAKHYSDFMGLPITR 356 >B9XBD4.1 B9XBD4_9BACT Putative uncharacterized protein Length = 362 Score = 314 bits (805), Expect = 8e-84, Method: Compositional matrix adjust. Identities = 162/360 (45%), Positives = 218/360 (60%), Gaps = 1/360 (0%) Query: 12 STNIAHRRLANQLINSPDSFEPEEVVRRLGALQAQDYLQAVWAVGLRTPSATLAGVERAI 71 + +IAH RL NQ I + +P +VV LGA+QAQD+ A W++GLR P T G+ERAI Sbjct: 3 TLDIAHHRLYNQQIATQRFAQPAQVVAWLGAVQAQDFAGAKWSIGLRLPETTDKGIERAI 62 Query: 72 AEGKIVLTWILRGTIHCVPPEDVKWLLQLSGPRLLKQAVRRMAQLELDERTLERSKEIIY 131 + IV TW +RGT+H + EDV+W+L+L R + + RR +LELD + R +++ Sbjct: 63 IDRTIVRTWPMRGTLHFLAAEDVRWMLKLLTTRTIAGSARRQQELELDGKVFARCEKLFI 122 Query: 132 NALTNGGIIRRPDMLALLEGEGIRTDGQRGYHILWHSAYSGLICFGPRSGKQQTFVLLDK 191 AL G + R + ALLE I T GQRGYHILW A GLICFG GKQQTF LLD+ Sbjct: 123 QALQGGRQLSRDAIYALLEKNHISTGGQRGYHILWRLAQEGLICFGAPEGKQQTFALLDE 182 Query: 192 WVEHXXXXXXXXXXXXXXXRYFTAHGPATVKDLAWWAGITLTEARAGLDAVKSELIAETI 251 WV RYF++HGPA++ D W+G+ + +A+AGLDAV S L+ I Sbjct: 183 WVPKSKSLEREVALAELAQRYFSSHGPASLHDFVGWSGLRIADAKAGLDAVASRLVQMKI 242 Query: 252 TGTEYWMPAAPAAETQFPSKEVHLLPGFDEYILGYNDRSAVLEPETAPRIVPGNNGVFLP 311 T YWMP + S + LLPGFDE++LGY DR+A LE + A +I PG+NG+F P Sbjct: 243 NDTVYWMPQELNVVNRTLST-LFLLPGFDEFMLGYKDRTAALELQHADKICPGSNGMFSP 301 Query: 312 TIAAGGQILGTWKRTVKPKGVELNFSPFEPLEHKWEEKLMQAAERYAAFLGLPVLKTVFE 371 T+ G+++GTWKRT K L +PF+ + L AAERYA +LG PV+ + E Sbjct: 302 TLVWDGRVVGTWKRTFKKGTAVLQPTPFDSMTKTQTRALAPAAERYARYLGAPVILSCEE 361 >B4D793.1 B4D793_9BACT Putative uncharacterized protein Length = 376 Score = 283 bits (725), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 151/350 (43%), Positives = 201/350 (57%), Gaps = 3/350 (0%) Query: 14 NIAHRRLANQLINSPDSFEPEEVVRRLGALQAQDYLQAVWAVGLRTPSATLAGVERAIAE 73 NI RL NQ I++ P EVV LGA+QAQDY A+W++GLR P AT +E AIAE Sbjct: 22 NIGRLRLHNQQISTHRFTRPAEVVAWLGAMQAQDYPGALWSIGLRLPGATQEDIEHAIAE 81 Query: 74 GKIVLTWILRGTIHCVPPEDVKWLLQLSGPRLLKQAVRRMAQLELDERTLERSKEIIYNA 133 IV TW +RGT+H V ED+ W+ L PR++ ++ R QLEL + R+++I A Sbjct: 82 RTIVRTWPMRGTLHFVAAEDLHWMRTLLAPRIIARSAGRHRQLELTDAIFTRAEKIFLKA 141 Query: 134 LTNGGIIRRPDMLALLEGEGIRTDGQRGYHILWHSAYSGLICFGPRSGKQQTFVLLDKWV 193 L G + R +M ALLE I T QRGYHILW A GL+CFG GKQ TF LLD+W+ Sbjct: 142 LRGGQQLTREEMFALLEKSRISTTDQRGYHILWRLAQEGLLCFGTHRGKQPTFTLLDEWL 201 Query: 194 EHXXXXXXXXXXXXXXXRYFTAHGPATVKDLAWWAGITLTEARAGLDAVKSELIAETITG 253 RYFT+HGPAT+ D W+G+ ++EA+AG+ + + L E + Sbjct: 202 PAGQPRDAEACLAELALRYFTSHGPATMDDFVAWSGLRISEAKAGVHLLSTRLARENVAE 261 Query: 254 TEYWMPA-APAAETQFPSKEVHLLPGFDEYILGYNDRSAVLEPETAPRIVPGNNGVFLPT 312 YW P A + S +LLPGFDE++LGY DRS L P+ A +I P +NGVF PT Sbjct: 262 KTYWFSTDTPVAAKK--SSAAYLLPGFDEFMLGYRDRSPSLAPKHADKICPSSNGVFHPT 319 Query: 313 IAAGGQILGTWKRTVKPKGVELNFSPFEPLEHKWEEKLMQAAERYAAFLG 362 + GQ++GTWKR + + + +PFE L A RY F+G Sbjct: 320 VVVDGQVIGTWKRIAQKSALSITPTPFESFGPTVRRALAAPARRYGQFVG 369 >C0U6M7.1 C0U6M7_9ACTO Putative uncharacterized protein Length = 353 Score = 267 bits (682), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 144/329 (43%), Positives = 196/329 (59%), Gaps = 3/329 (0%) Query: 14 NIAHRRLANQLINSPDSFEPEEVVRRLGALQAQDYLQAVWAVGLRTPSATLAGVERAIAE 73 ++A RL Q + P E VR L +Q QD A+ +V LRT T AGVE A+A Sbjct: 6 DLALLRLVAQRVAGPPPATATEAVRLLTCVQGQDLPGALTSVALRTAERTRAGVEAALAA 65 Query: 74 GKIVLTWILRGTIHCVPPEDVKWLLQLSGPRLLKQAVRRMAQLELDERTLERSKEIIYNA 133 G++V +W +RGT+H +P ED+ W+L L GPR+L A +R A L L E ER++E++ A Sbjct: 66 GEVVRSWPMRGTLHLLPAEDLPWMLDLLGPRVLAGAAQRRAALGLTEAEAERARELVTAA 125 Query: 134 LTNGGIIRRPDMLALLEGEGIRTDGQRGYHILWHSAYSGLICFGPRSGKQQTFVLLDKWV 193 LT G R ++LA++ G+ GQRGYH+LW+ A +G +C GP +G +Q FVLLD+WV Sbjct: 126 LTGGRRCGRKELLAVVADGGVAVTGQRGYHLLWYLAQTGTLCMGPMAGGEQAFVLLDEWV 185 Query: 194 EHXXXXXXXXXXXXXXXRYFTAHGPATVKDLAWWAGITLTEARAGLDAVKSELIAETITG 253 RYF HGPATV DLA WAG+ LT+ RAG+ AV+ L A + G Sbjct: 186 TAQRRLDRDTGLGELALRYFRGHGPATVADLARWAGLPLTDVRAGVAAVRDRLAAVEVDG 245 Query: 254 TEYWM-PAAPA--AETQFPSKEVHLLPGFDEYILGYNDRSAVLEPETAPRIVPGNNGVFL 310 E+ + P P AE + + + LLPGFDE++LGY DRS + PE A RIVPG NGVF Sbjct: 246 REHLLAPETPDLLAEHRADAAGLFLLPGFDEFVLGYADRSCAVPPEFADRIVPGGNGVFR 305 Query: 311 PTIAAGGQILGTWKRTVKPKGVELNFSPF 339 PT+ G++LGTW + + +PF Sbjct: 306 PTVVHRGRVLGTWAWQGRGAKRSVTATPF 334 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.136 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,312,212,275 Number of extensions: 96160956 Number of successful extensions: 220012 Number of sequences better than 1.0e-05: 119 Number of HSP's gapped: 219845 Number of HSP's successfully gapped: 120 Length of query: 377 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 240 Effective length of database: 1,770,017,148 Effective search space: 424804115520 Effective search space used: 424804115520 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 132 (55.5 bits)