BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0006.p (832 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A6EXE2.1 A6EXE2_9ALTE Serine/threonine kinase with two-component... 315 1e-83 Q2BMK3.1 Q2BMK3_9GAMM Serine/threonine kinase with two-component... 313 6e-83 C4CVD2.1 C4CVD2_9SPHI Predicted ATPase, COG3899 308 1e-81 B9Z8Q8.1 B9Z8Q8_9NEIS Diguanylate cyclase/phosphodiesterase with... 300 4e-79 B2J816.1 B2J816_NOSP7 Sensor protein EC=2.7.13.3 291 2e-76 >A6EXE2.1 A6EXE2_9ALTE Serine/threonine kinase with two-component sensor domain Length = 1684 Score = 315 bits (808), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 174/549 (31%), Positives = 296/549 (53%), Gaps = 12/549 (2%) Query: 46 NAPESALAFIGYAMLLSGFGDSKG-AFDYGRLGIRINDKFDDLQWKGAAYVLYTLFCHTW 104 N PESA A+ Y MLL G D + Y ++G+ IN++ DDL + +Y +F H W Sbjct: 944 NCPESAFAYAAYGMLLCGELDEPALGYQYAKVGLAINERLDDLSLRARVIYVYAMFVHHW 1003 Query: 105 TEPWDTLQEWFTTSIDASLRTGDLLYLAHSCFYVNLWNPGMDIAANLQESSRMIAMIEKT 164 + W TL WF I+A ++GDLLYLA+S +W+PGMD+ Q + ++ + Sbjct: 1004 SNHWATLTPWFRKGIEAGYQSGDLLYLAYSAQDCVIWDPGMDLETASQLHQENLDIVREC 1063 Query: 165 KYKESLATAQLSRQYLLNLAGELDNRLSFDSEDFSEASYLRELEAAKYYSGIAIYYIYKM 224 Y++SL + L Q N G + S ++DF + + L + ++ +GIA ++IY Sbjct: 1064 AYQDSLDSGSLFLQMQRNFLGTTHSPASLSTDDFDDQACLEAMSTRQFITGIANHHIYSA 1123 Query: 225 KLLFTYENYSGALACIDKAYPIIGTLAGSAFMEEFALYTFLNLAYAYKDLGANRKRQAKA 284 ++ Y NY AL + K +I + + F + L L + + ++ + Sbjct: 1124 EINLLYGNYEQALHFVRKQDKLIKSAMSLPQLVRFYIVANLTLTTLFPTMNRADQQATRE 1183 Query: 285 RMRKEYRRVRKWARHAPQTFRQHEMLMKAEWARIAGRDDEAGQYYDCAIEASEQSGFVRY 344 R+ ++ R+ +WA + FR + LM AE AR+ GR D A + YD AI+ + +GF+R Sbjct: 1184 RLERDLARMTRWADNCEANFRHLQFLMTAELARLDGRHDAALELYDTAIDTARANGFLRD 1243 Query: 345 KALTSELAARFYYRKDFKEFAGYLLRQSEYYYSVWGAKGKIAFIHERYPDLIRRISTKEF 404 +A E AAR A LR + Y+ WGA+ K+ + + +P L + + Sbjct: 1244 EATAFERAARHLLALGKGRSAEGYLRGAHGVYNRWGAQRKVEQLEDEFPVLRQWVQA--- 1300 Query: 405 LHGRTVTDYTESLDINSMLLASQAISKEIELSNLLEALMEIVIKNAGAQRGCILMTSKTN 464 H + SLD+ S++ AS+ IS E+ L LL+ + I+++NAG Q GC+++ + Sbjct: 1301 -HLSPPGSHLASLDLASVMKASREISGEMVLDQLLQKTLAILLENAGGQWGCLIVRAGGA 1359 Query: 465 LLVEGEYRPKE--DKITVAVH----DRT-RYDHLPYAILKQVEESRESVIYNDAFSETPF 517 VE RP++ ++ + H DR + LP +++ QV + E+V+ +DA ++ PF Sbjct: 1360 FSVEAIIRPEQPSPQVEIPTHSTLSDRQGKALALPMSVISQVFQRGEAVVLHDAMADGPF 1419 Query: 518 VNEPYIVKHRPKSMVCMPLINQNKTIAVIYLENNLVTGVFTKERMKIINLLSREMVFSLE 577 VN+PY V P+S++C+P+I + + A +Y+ENNL VFT +R+++I LLS + ++E Sbjct: 1420 VNDPYTVHLHPRSVLCVPIIVRERFEAAVYMENNLTDAVFTDDRVELIQLLSAQAAVAIE 1479 Query: 578 NATLYSELE 586 NA LY++++ Sbjct: 1480 NARLYTQVQ 1488 >Q2BMK3.1 Q2BMK3_9GAMM Serine/threonine kinase with two-component sensor domain Length = 1723 Score = 313 bits (801), Expect = 6e-83, Method: Compositional matrix adjust. Identities = 187/611 (30%), Positives = 320/611 (52%), Gaps = 29/611 (4%) Query: 1 MKDPEMKLVXXXXLINFIPPAFISGETSXXXXXXXXXXXXXXXXXNAPESALAFIGYAML 60 +KD E L+ L+ P AF+SG + N+PESA A+ + ML Sbjct: 918 LKD-ESVLIAIRLLMEIFPAAFLSGNGNILPYIVLKAVNLSMRHGNSPESAFAYAAFGML 976 Query: 61 LSGFGDSKG-AFDYGRLGIRINDKFDDLQWKGAAYVLYTLFCHTWTEPWDTLQEWFTTSI 119 L G D + + +G+LG+ IN++ DD++ K +Y +F H W+E W TL WF I Sbjct: 977 LCGELDEQALGYQFGKLGVEINERHDDIELKTRVTYVYAMFVHHWSEHWSTLTPWFRKGI 1036 Query: 120 DASLRTGDLLYLAHSCFYVNLWNPGMDIAANLQESSRMIAMIEKTKYKESLATAQLSRQY 179 ++GDLLYLA+S +W+P +DI + L + + + ++ +T Y++S+ +A L Q Sbjct: 1037 KYGYQSGDLLYLAYSAQDCVIWDPTLDIPSMLTQHADNLQIVRETGYQDSIDSATLYLQL 1096 Query: 180 LLNLAGELDNRLSFDSEDFSEASYLRELEAAKYYSGIAIYYIYKMKLLFTYENYSGALAC 239 L N G+ DN S ++ F+E L + K+ +GIA Y+IYK + F +Y AL Sbjct: 1097 LNNFMGQTDNSESLSNQSFNEQECLEGMRQRKFITGIANYHIYKAEACFLNGSYDKALLH 1156 Query: 240 IDKAYPIIGTLAGSAFMEEFALYTFLNLAYAYKDL-GANRKRQAKARMRKEYRRVRKWAR 298 + + +I + + F + FL A Y ++ + + +R++K+ +R+R WA Sbjct: 1157 VIEQDKLIKSSMSLPQLARFYIVAFLTRATTYSEIESPEEQDRTLSRLKKDLQRMRHWAN 1216 Query: 299 HAPQTFRQHEMLMKAEWARIAGRDDEAGQYYDCAIEASEQSGFVRYKALTSELAARFYYR 358 + P F + LM+AE A + + Y+ AI A+ +GF+R +A+ E AAR Sbjct: 1217 NCPDNFLHLQYLMEAELACLVKPKEAHLNQYEAAINAAVANGFIRDEAVACERAARHLLD 1276 Query: 359 KDFKEFAGYLLRQSEYYYSVWGAKGKIAFIHERYP---DLIR-RISTKEFLHGRTVTDYT 414 A LR + + Y WGA K + + +P +L R R+ E L G D + Sbjct: 1277 VGMSRGAEGYLRSAHHAYKRWGALRKTEALEKEFPVLQELSRGRLDQNEQL-GYGGID-S 1334 Query: 415 ESLDINSMLLASQAISKEIELSNLLEALMEIVIKNAGAQRGCILMTSKTNLLVEGEY--- 471 ++LD+ S++ AS+AIS+E+ S L++ +++I+++NAGAQ GC ++ VE + Sbjct: 1335 KNLDLASVMKASRAISREMIFSRLIQTILDILLENAGAQWGCFVVNDGEQFSVEAQSGSL 1394 Query: 472 ----------------RPKEDKITVAVHDRTRYDHLPYAILKQVEESRESVIYNDAFSET 515 + K +R +LP ++ V + S+I NDA +++ Sbjct: 1395 PVFVDKAATLKVLQLKNADQPKSQTESPERGLVTNLPITVISHVLRTSSSLILNDASNDS 1454 Query: 516 PFVNEPYIVKHRPKSMVCMPLINQNKTIAVIYLENNLVTGVFTKERMKIINLLSREMVFS 575 PF+++PY+V +P S+ C+PL N V+Y+ENNL T VFT+ R+++++LL+ + + Sbjct: 1455 PFMDDPYMVHQKPGSIFCVPLQRGNIQ-GVVYMENNLSTDVFTESRLEVVSLLTDQATVA 1513 Query: 576 LENATLYSELE 586 +ENA LY +++ Sbjct: 1514 IENAGLYEQVQ 1524 >C4CVD2.1 C4CVD2_9SPHI Predicted ATPase, COG3899 Length = 1774 Score = 308 bits (790), Expect = 1e-81, Method: Compositional matrix adjust. Identities = 179/595 (30%), Positives = 310/595 (52%), Gaps = 14/595 (2%) Query: 1 MKDPEMKLVXXXXLINFIPPAFISGETSXXXXXXXXXXXXXXXXXNAPESALAFIGYAML 60 ++DPE K V L P AF+ G S N ESA A++ + + Sbjct: 893 LRDPEKKAVARL-LTEIGPSAFVLGNDSLYGLTQLKIVNLSMQYGNCEESAYAYVAFGAV 951 Query: 61 LS-GFGDSKGAFDYGRLGIRINDKFDDLQWKGAAYVLYTLFCHTWTEPWDTLQEWFTTSI 119 LS FGD K A +G+LG+ +N+K D++++ Y + H + W+T ++F I Sbjct: 952 LSEAFGDLKSAESFGQLGLALNEKLGDIEYRCRVIAAYGVLTHHFNNHWNTTGDFFKKGI 1011 Query: 120 DASLRTGDLLYLAHSCFYVNLWNPGMDIAANLQESSRMIAMIEKTKYKESLATAQLSRQY 179 +A +GDL YLA+ +W P +D+ ++L + + ++ T Y +++ +A ++ Q Sbjct: 1012 EAGYLSGDLFYLAYCATNCTVWQPSLDLPSSLADQKKYFKVVLDTDYTDAIDSANMNMQL 1071 Query: 180 LLNLAGELDNRLSFDSEDFSEASYLRELEAAKYYSGIAIYYIYKMKLLFTYENYSGALAC 239 N G + D +F+E L+++ KY SGI +Y+I+K + Y + + Sbjct: 1072 TKNFMGLTEGLYVLDDAEFNEVRCLKQMTQRKYSSGIGMYHIHKAYIYLFYGQHKKSYES 1131 Query: 240 IDKAYPIIGTLAGSAFMEEFALYTFLNLAYAYKDLGANRKR-QAKARMRKEYRRVRKWAR 298 + +A + +L + + +F + Y G + R Q K RM+KE ++++WA Sbjct: 1132 VKQADQYVKSLVSLINLTRLCIVSFF-ASSGYLLFGIDPPRDQLKKRMKKELAKMKRWAA 1190 Query: 299 HAPQTFRQHEMLMKAEWARIAGRDDEAGQYYDCAIEASEQSGFVRYKALTSELAARFYYR 358 + P F + LM+AE A I A + Y+ AI + ++ + +A +ELAA+F+ R Sbjct: 1191 YNPTNFLHMQHLMEAEIANIDDDFVGATKLYEKAIRLAGENAWQADEAFANELAAKFFSR 1250 Query: 359 KDFKEFAGYLLRQSEYYYSVWGAKGKIAFIHERYPDLIRRISTKEF-----LHGRTVTDY 413 + + + Y Y+ WGA+GKI + E YP L + + + L G + Sbjct: 1251 HGIDTASSGYWKDAYYLYNKWGAQGKIKLLREAYPQLFKTVRSSAAERVSDLSGGEERET 1310 Query: 414 TESLDINSMLLASQAISKEIELSNLLEALMEIVIKNAGAQRGCILMTSKTNLLVEGEYRP 473 +LD+++++ +SQAIS EIEL +L+ +M I++ NAGA+ G +L+ +L++ Sbjct: 1311 IYALDVDTIVKSSQAISGEIELKSLVIKMMNIIMMNAGAENGMLLLKQDDRILIQASASA 1370 Query: 474 KEDKI--TVAVHDRTRYDHLPYAILKQVEESRESVIYNDAFSETPFVNEPYIVKHRPKSM 531 E K + D + LP I+ V +ESV+ DA ++ F N+ YI++++ KS+ Sbjct: 1371 DEVKTMQNIPAEDSRQ---LPQTIINYVSHLQESVVLYDAANQGKFRNDDYILRNQTKSI 1427 Query: 532 VCMPLINQNKTIAVIYLENNLVTGVFTKERMKIINLLSREMVFSLENATLYSELE 586 +C P++ NK ++YLENN+ G FT+ER+KI+ LLS +M S++NA LYS LE Sbjct: 1428 LCSPIVFLNKLYGIVYLENNISVGAFTEERLKIVRLLSSQMAISIQNAILYSNLE 1482 >B9Z8Q8.1 B9Z8Q8_9NEIS Diguanylate cyclase/phosphodiesterase with PAS/PAC and GAF sensor(S) Length = 2093 Score = 300 bits (768), Expect = 4e-79, Method: Compositional matrix adjust. Identities = 219/814 (26%), Positives = 379/814 (46%), Gaps = 105/814 (12%) Query: 46 NAPESALAFIGYA-MLLSGFGDSKGAFDYGRLGIRINDKFDDLQWKGAAYVLYTLFCHTW 104 N PESA + + L + G + +++G LG+R+++K+ D K A ++ ++F + W Sbjct: 943 NVPESAKGYASFGNTLAANLGRYRTGYEFGMLGLRLSEKYGDQSLKCKACLILSMFLNHW 1002 Query: 105 TEPWDTLQEWFTTSIDASLRTGDLLYLAHSCFY---VNLWNPGMDIAANLQESSRMIAMI 161 + P + + A + +G+ ++ + FY + L+ G ++ E + +A Sbjct: 1003 SRPLADSEVFDEEGQQAGMESGEFQFVGYILFYGRALRLFFHGENLVQLAPELDKYLAFT 1062 Query: 162 EKTKYKESLATAQLSRQYLLNLAGELDNRLSFDSEDFSEASYLRELEAAKYYSGIAIYYI 221 K K+ S +R+ + L+GE LSFD E++YL + + + Y Sbjct: 1063 SKVKHHLSSDNLLGARKIVAVLSGEPSASLSFDGHGLDESAYLAQCHDNGSMAAVCFYLT 1122 Query: 222 YKMKLLFTYENYSGALACIDKAYPIIGTLAGSAFMEEFALYTFLNLAYAYKDLGANRKRQ 281 K L+ + + AL CI++A ++G + G E Y L L Y A+ Sbjct: 1123 VKAFTLYLLDEPTEALPCIEQAGELLGYVKGGLTQAEHCFYHSLILCALYPQ--ADDPAA 1180 Query: 282 AKARMRKEYRRVRKWARHAPQTFRQHEMLMKAEWARIAGRDDEAGQYYDCAIEASEQSGF 341 A++ R++ WA HAP F +L++AE R+A R EA + YD AIEA+ GF Sbjct: 1181 LLAQLEANQRQMLVWAEHAPANFLHQHLLVQAEMGRLADRPVEAMELYDRAIEAAGSRGF 1240 Query: 342 VRYKALTSELAARFYYRKDFKEFAGYLLRQSEYYYSVWGAKGKIAFIHERYPDLIRRIST 401 ++Y+AL +ELAA+F+ + +FA L ++ Y WGAK K + + YP LI ++ Sbjct: 1241 MQYEALANELAAKFWLGRGKPDFAVRYLNRARLGYRAWGAKRKEVALQQAYPQLIAELAY 1300 Query: 402 KEFLHGRT-------------------VTDYTES--LDINSMLLASQAISKEIELSNLLE 440 + G + +T Y LD+ ++L ASQAIS EI L LL+ Sbjct: 1301 PAQVTGISPMTPWQPGIGALHYSQYDPLTGYPPGSQLDLEAVLKASQAISGEIVLEKLLD 1360 Query: 441 ALMEIVIKNAGAQRGCILMTSKTNLLVEGEYRPKEDKITVAVHDRTRYDHLPY------- 493 L+ +VI+NAGAQRG +++ +GE++ I+V+ + P Sbjct: 1361 RLLRVVIENAGAQRGSLVLRR------DGEWQVVA-SISVSAPQAALFLDKPCMVEASSE 1413 Query: 494 ---AILKQVEESRESVIYNDAFSETPFVNEPYIVKHRPKSMVCMPLINQNKTIAVIYLEN 550 I++ V +++ V+ +DA +E F +PY++ RPKS++C P++ Q I V+YLEN Sbjct: 1414 VAAQIVQYVVRTQQGVVLHDAATEGMFTRDPYVLDRRPKSVLCQPIVQQGVLIGVLYLEN 1473 Query: 551 NLVTGVFTKERMKIINLLSREMVFSLENATLYS--------------ELERSEEKYRELV 596 N V G F+ +R+ ++ +L+ ++ SL+NA LY+ EL +E KYR++ Sbjct: 1474 NQVDGAFSPDRVALLGMLASQVAISLQNAMLYASLSTEITEHTRTEEELRLAEAKYRDIF 1533 Query: 597 NNMQDGIFITQ-DLICRYVNEALAQMLGYET-EEMVGQP----FEQFVSLPEREKVTHYY 650 +N +GIF T D N ++A++LGY++ +++VG + FV E E++ Sbjct: 1534 DNATEGIFRTSADGQLLMANPSMARILGYDSPDQLVGHGQAGLVQHFVHGEEMEELLRVI 1593 Query: 651 TRRVEGKQAPFEYETKLMHKDQIREVIVIHKVTRINYMNRPAIQ---GTVKDITERKKAX 707 R + FE+ + + + H + + R +Q G ++DI+ERK+ Sbjct: 1594 RRHDAIRN--FEFHGRRTDASVVELSLSAHAIRDV----RGEVQFYEGMLQDISERKRLE 1647 Query: 708 XXXXXXXXXXXXXVAERTRXXXXXXXXXXKYIELIEQISITDELTGLYNRRYFNKLFLEE 767 ++ + D LT L NR + Sbjct: 1648 AQ--------------------------------LQHQATHDALTCLPNRNVLLDRLAQA 1675 Query: 768 VEKAGANKRHLTYLMLDIDYFKKYNDTYGHYEGD 801 + A + +D+D FK ND++GH GD Sbjct: 1676 IAHAKCHGEQCAVCFIDLDRFKWINDSFGHDVGD 1709 >B2J816.1 B2J816_NOSP7 Sensor protein EC=2.7.13.3 Length = 2370 Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 208/727 (28%), Positives = 364/727 (50%), Gaps = 37/727 (5%) Query: 1 MKDPEMKLVXXXXLINFIPPAFISGETSXXXXXXXXXXXXXXXXXNAPESALAFIGYAML 60 ++DP +K V L PP ++ G N +S A+ YAML Sbjct: 897 IQDPNIKTVISL-LTTLGPPTYL-GRPDLFPLVVLKAVNYSLKFGNTEDSCFAYSMYAML 954 Query: 61 L-SGFGDSKGAFDYGRLGIRINDKFDDLQWKGAAYVLYTLFCHTWTEPWDTLQEWFTTSI 119 L S F D + + + I++N+K DL+ +G ++ + W T + Sbjct: 955 LVSIFHDIPTGYAFSEMTIQLNEKLHDLKLRGVVLHIHGSHINVWCNHIATDIPFLERGF 1014 Query: 120 DASLRTGDLLYLAHSCFYVNLWNP---GMDIAANLQESSRMIAMIEKTKYKESLATAQLS 176 + GD+ +A+ Y W G +A + + A ++K++ T +L Sbjct: 1015 IGCVEAGDV-TMANYNGYQGSWQIIQLGFPLAETYKSLEKYTAFARQSKHETVYQTIKLQ 1073 Query: 177 RQYLLNLAGELDNRLSFDSEDFSEASYLRELEAAKYYSGIAIYYIYKMKLLFTYENYSGA 236 + L+NL G + L+ +++F+E+S L + A + SG Y+I K+ + FTY Y+ A Sbjct: 1074 QMLLMNLRGLTHHNLTLSNDEFNESSALSIITDADFVSGTIFYHIIKLIIFFTYGKYTEA 1133 Query: 237 L-ACIDKAYPIIGTLAGSAFMEEFALYTFLNLAYAYKDLGANRKRQAKARMRKEYRRVRK 295 + ++ + + TLA S ++ LY L L Y + + Q + ++++ Sbjct: 1134 FNSALELSNFPVKTLA-SLIETDYILYYSLTLTALYPTVSGQEQEQFLQSLESHQKQLQY 1192 Query: 296 WARHAPQTFRQHEMLMKAEWARIAGRDDEAGQYYDCAIEASEQSGFVRYKALTSELAARF 355 WA H P+ F L+ AE ARI GR+ EA + YD +I ++ + GFV+Y+AL EL A+F Sbjct: 1193 WANHCPENFLHKSQLVAAEIARIQGRNLEAMRLYDQSIASAREQGFVQYEALAHELGAKF 1252 Query: 356 YYRKDFKEFAGYLLRQSEYYYSVWGAKGKIAFIHERYPDLIRRISTKEFLHGRTVTDYTE 415 Y+ + F+ A L++S+ Y W A K+ + E YP L+ R ++ + T E Sbjct: 1253 YFERKFELIAKTYLQESKNAYIRWEASAKVKHLEESYPQLLPR---QQLVSNGTFFSTGE 1309 Query: 416 SLDINSMLLASQAISKEIELSNLLEALMEIVIKNAGAQRGCILMTSKTNLLVEGEYR--P 473 LD S++ ASQ IS EI LS LL+ LM+IVI+ AGA+ G +L+ + NL++E E + P Sbjct: 1310 HLDFLSIVKASQTISSEIVLSRLLKTLMQIVIEQAGAEIGYLLLEHEQNLVIEVEAKVNP 1369 Query: 474 KEDKITVA--VHDRTRYDHLPYAILKQVEESRESVIYNDAFSETPFVNEPYIVKHRPKSM 531 + +K+ V+ V +P ++L V+ ++E+VI +A + F + Y+++ +PKS+ Sbjct: 1370 QAEKLNVSRPVFQGEISQLIPQSMLNYVQRTQETVILQNATEQNLFSGDEYVIQKQPKSV 1429 Query: 532 VCMPLINQNKTIAVIYLENNLVTGVFTKERMKIINLLSREMVFSLENATLYSELERSEEK 591 +C+P+ Q K + ++YLENNL+ FT+E++ ++++L+ ++ SLENA LY LE S+E+ Sbjct: 1430 LCLPIARQFKLLGILYLENNLIPSAFTQEKLSVLDILTVQIAISLENARLYQGLENSQEQ 1489 Query: 592 YRELVNNMQDGIF---ITQDLICRYVNEALAQMLGYETEEMVGQPFEQFVSL--PEREKV 646 + + + G++ I +L +E + Q+ G E V L +R + Sbjct: 1490 LNLALKSGKIGVWSWDIANNLFDW--DEQVYQLFGLTPETFVATSETILARLHPDDRSLL 1547 Query: 647 THYYTRRV-EGKQAPFEYETKLMHKDQ------IREVIVIHKVTRINYMNRPAIQGTVKD 699 +R + EG + EY +++ D R +K + +M+ G V D Sbjct: 1548 AQSLSRTISEGVEHDLEY--RMIRDDSSIRYLACRGKAFFNKAGKATHMS-----GVVLD 1600 Query: 700 ITERKKA 706 IT+RK+A Sbjct: 1601 ITDRKQA 1607 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.135 0.393 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 4,332,882,041 Number of extensions: 170686632 Number of successful extensions: 438033 Number of sequences better than 1.0e-05: 1838 Number of HSP's gapped: 440572 Number of HSP's successfully gapped: 1863 Length of query: 832 Length of database: 3,060,696,203 Length adjustment: 144 Effective length of query: 688 Effective length of database: 1,704,070,043 Effective search space: 1172400189584 Effective search space used: 1172400189584 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 136 (57.0 bits)