BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0444.0005.p
         (93 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B6BHU7.1 B6BHU7_9PROT Diguanylate cyclase                              65   2e-09
B9JR77.1 B9JR77_AGRVS GGDEF family protein                             63   7e-09
B6BKZ4.1 B6BKZ4_9PROT Sensory box/ggdef family protein                 63   7e-09
A8ZUP2.1 A8ZUP2_DESOH Serine/threonine protein kinase                  62   2e-08
Q4ZU48.1 Q4ZU48_PSEU2 GGDEF                                            62   2e-08

>B6BHU7.1 B6BHU7_9PROT Diguanylate cyclase
          Length = 774

 Score = 65.1 bits (157), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 34/81 (41%), Positives = 48/81 (59%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGIITVSIGVAAVYVDNVREE 68
           GEEFGI+  G    QS E  E +R++I +L+IEHA +T    +T S G+         EE
Sbjct: 690 GEEFGILFKGLDKEQSLELIEQVRQNIENLKIEHANNTASQYVTSSFGLVVKDSAITNEE 749

Query: 69  DIYKLGDDALYQSKAQGRNCV 89
           ++Y+  DD LY++K  GRN V
Sbjct: 750 ELYREADDLLYKAKDGGRNRV 770


>B9JR77.1 B9JR77_AGRVS GGDEF family protein
          Length = 242

 Score = 63.2 bits (152), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 37/85 (43%), Positives = 53/85 (62%), Gaps = 9/85 (10%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIE---HALSTDYGIITVSIGVAAVYVDNV 65
           GEEFG+++ G T +Q  E  + IRRSI+DLR+      +ST     ++SIGVA +  +  
Sbjct: 146 GEEFGLIIQGDTIQQRFERIDMIRRSISDLRLHFDGRLIST-----SISIGVAEISPER- 199

Query: 66  REEDIYKLGDDALYQSKAQGRNCVT 90
           R E +Y   D ALY++KA GRNC+ 
Sbjct: 200 RPEVVYAAADRALYRAKANGRNCIV 224


>B6BKZ4.1 B6BKZ4_9PROT Sensory box/ggdef family protein
          Length = 505

 Score = 63.2 bits (152), Expect = 7e-09,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 50/84 (59%), Gaps = 1/84 (1%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGIITVSIGVAAVYV-DNVRE 67
           GEEFG++    + +++   A  +R SI DL+IEH  ++    +T S+G+  +   D V E
Sbjct: 414 GEEFGVLFKSDSKQKAEIIANKLRESIEDLKIEHKGNSASSFVTASVGLVCLKAQDIVDE 473

Query: 68  EDIYKLGDDALYQSKAQGRNCVTM 91
             +YK+ DD LYQ+K  GRN V +
Sbjct: 474 AQVYKMADDLLYQAKENGRNKVCI 497


>A8ZUP2.1 A8ZUP2_DESOH Serine/threonine protein kinase
          Length = 1644

 Score = 62.0 bits (149), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 34/83 (40%), Positives = 49/83 (59%), Gaps = 1/83 (1%)

Query: 9    GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGIITVSIGVAAVYVDNVREE 68
            GEE  +++    P  +   AE IRR +  LR+EHA   +Y  +T+S+GVA   +    ++
Sbjct: 1561 GEEMALLLHETGPEAAFALAEKIRRRVEALRVEHA-PGEYLQVTISLGVAGFPIHAKNKK 1619

Query: 69   DIYKLGDDALYQSKAQGRNCVTM 91
             + K  DDALY SKA GRN VT+
Sbjct: 1620 PLVKKADDALYSSKAGGRNMVTL 1642


>Q4ZU48.1 Q4ZU48_PSEU2 GGDEF
          Length = 555

 Score = 61.6 bits (148), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 37/86 (43%), Positives = 54/86 (62%), Gaps = 5/86 (5%)

Query: 9   GEEFGIVVSGFTPRQSREYAESIRRSIADLRIEHALSTDYGIITVSIGVAAVYVDNVREE 68
           GEE  +V+ G     +R+ AE I R+I D +IEH  S  +GI+T+S+GV A +V   R+ 
Sbjct: 439 GEEIAVVLPGTDESNARQVAEKILRAIRDEQIEHPASP-FGIVTISLGV-ATFVGTDRQL 496

Query: 69  D---IYKLGDDALYQSKAQGRNCVTM 91
           D   + +L D ALY +K+QGRN V +
Sbjct: 497 DQRGLIELADRALYAAKSQGRNRVNV 522


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.136    0.379 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 492,134,207
Number of extensions: 16307458
Number of successful extensions: 61030
Number of sequences better than 1.0e-05: 240
Number of HSP's gapped: 63231
Number of HSP's successfully gapped: 240
Length of query: 93
Length of database: 3,060,696,203
Length adjustment: 62
Effective length of query: 31
Effective length of database: 2,476,593,273
Effective search space: 76774391463
Effective search space used: 76774391463
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)