BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0004.p (519 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1T7V8.1 C1T7V8_9FIRM Gamma-aminobutyrate permease-like transporter 379 e-103 B8D243.1 B8D243_HALOH Amino acid permease-associated region 354 1e-95 B9E2W2.1 B9E2W2_CLOK1 Putative uncharacterized protein 350 3e-94 A5MYV6.1 A5MYV6_CLOK5 Predicted amino acid ABC transporter, perm... 350 3e-94 A6M206.1 A6M206_CLOB8 Amino acid permease-associated region 345 7e-93 >C1T7V8.1 C1T7V8_9FIRM Gamma-aminobutyrate permease-like transporter Length = 486 Score = 379 bits (972), Expect = e-103, Method: Compositional matrix adjust. Identities = 195/332 (58%), Positives = 253/332 (76%), Gaps = 1/332 (0%) Query: 1 MGKEEKGLSAWGLTMLALGTVVGGSFFLGSSVAIRAAGPSVLLSYVIGGILVYFILSALS 60 M K+ KGLS W LTM+ALGTVVGGSFFLGS+VAIRAAGP+V++S+++GG+LVYFIL ALS Sbjct: 1 MEKKHKGLSVWQLTMMALGTVVGGSFFLGSAVAIRAAGPAVIISFILGGVLVYFILFALS 60 Query: 61 EMTVANPVAGSFRTYTEQAFGRGAGFTVGWVYWTGLVLAMSSEATAVSILLRGWFPALPL 120 E+TV++P GSFRT+ +AFG G GF VGWVYWTGLVLAMSSEATAVSILLRGWFP + + Sbjct: 61 ELTVSDPAPGSFRTFATRAFGPGTGFVVGWVYWTGLVLAMSSEATAVSILLRGWFPGISM 120 Query: 121 ALLGSGIIAGVTLLNLLGAKRLSRLESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVG 180 L GS II G+T LNLLGA RLS+LES + +G Sbjct: 121 LLAGSLIITGITFLNLLGADRLSKLESGLAAVKLFAIAAFVILGLFLIAGLMPGVPQ-IG 179 Query: 181 LDVVRGQSLFPGGIAGIAGSMLMVMFTYAGFEVLGLAASETGNPGVTIPRAIRYTIVLLV 240 L + + FPGGI+GIAGSML+V+FTYAGFE++GLAASE+ + TIPRAI YT++ L+ Sbjct: 180 LGELIDELWFPGGISGIAGSMLIVIFTYAGFEIIGLAASESNDAPNTIPRAITYTVLGLI 239 Query: 241 GLYLAAIIGLFLLLPPARVSEQVSPFVSALSLYGLGWAGTVMNIVLVSAILSTMLASVFG 300 LY+A++ + L+P A ++E+VSP V+AL+ +G+GWAG ++NIVL++AILSTMLA++FG Sbjct: 240 SLYVASVAVILPLIPTASLTEKVSPLVAALNRWGIGWAGNIINIVLITAILSTMLAAMFG 299 Query: 301 LGRMLRSLAEEGHTPAWMRDRADIPYRGILIS 332 LGRM+ SLA EG P W+ +++++PYRGIL S Sbjct: 300 LGRMISSLAHEGQAPVWLINKSNVPYRGILFS 331 >B8D243.1 B8D243_HALOH Amino acid permease-associated region Length = 484 Score = 354 bits (908), Expect = 1e-95, Method: Compositional matrix adjust. Identities = 189/332 (56%), Positives = 239/332 (71%), Gaps = 1/332 (0%) Query: 1 MGKEEKGLSAWGLTMLALGTVVGGSFFLGSSVAIRAAGPSVLLSYVIGGILVYFILSALS 60 M + + GL++ LT+LALGTVVGGSFFLGS++AI+ AGPS+++SY++GG LVY IL +LS Sbjct: 1 MPENKHGLTSSRLTLLALGTVVGGSFFLGSAIAIKNAGPSIIISYLLGGALVYVILYSLS 60 Query: 61 EMTVANPVAGSFRTYTEQAFGRGAGFTVGWVYWTGLVLAMSSEATAVSILLRGWFPALPL 120 EMT ++P AGSFR Y E +G AGF VGW+YWTGLVLAMSSEA AVS L+ WFP + L Sbjct: 61 EMTTSDPTAGSFRNYCENMYGPMAGFVVGWLYWTGLVLAMSSEAIAVSAFLKKWFPQVSL 120 Query: 121 ALLGSGIIAGVTLLNLLGAKRLSRLESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVG 180 LG+ I VT++NLLG ++LS LES +G Sbjct: 121 PALGAVTIIAVTIINLLGVEKLSTLESGLAVVKLLAIVGFIVLALFLVAGLLPGR-SPIG 179 Query: 181 LDVVRGQSLFPGGIAGIAGSMLMVMFTYAGFEVLGLAASETGNPGVTIPRAIRYTIVLLV 240 + + LFP G+AGIAGSML+V+FTYA FE++GLA+SET NP TIPRAI YT+ LV Sbjct: 180 AGELLNEPLFPRGLAGIAGSMLIVIFTYARFEIIGLASSETINPHKTIPRAITYTVAGLV 239 Query: 241 GLYLAAIIGLFLLLPPARVSEQVSPFVSALSLYGLGWAGTVMNIVLVSAILSTMLASVFG 300 GLY AII L L+P AR+SE+VSP V+AL+ GLGWAG V+NIVL++AILSTMLA+ FG Sbjct: 240 GLYTLAIIFLLPLIPTARLSEEVSPLVAALTRSGLGWAGDVINIVLITAILSTMLAATFG 299 Query: 301 LGRMLRSLAEEGHTPAWMRDRADIPYRGILIS 332 + RMLRSLA+EGH P ++RD+ DIPYRGI+ S Sbjct: 300 IARMLRSLADEGHAPGFLRDKGDIPYRGIIFS 331 >B9E2W2.1 B9E2W2_CLOK1 Putative uncharacterized protein Length = 482 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 194/332 (58%), Positives = 242/332 (72%) Query: 1 MGKEEKGLSAWGLTMLALGTVVGGSFFLGSSVAIRAAGPSVLLSYVIGGILVYFILSALS 60 M K+ KGLS LTM+ALGT++GGSFFLGSSVAI A GP +++SYV+GGILVYFILSALS Sbjct: 1 MEKKHKGLSVLQLTMMALGTIIGGSFFLGSSVAIHALGPFIIISYVLGGILVYFILSALS 60 Query: 61 EMTVANPVAGSFRTYTEQAFGRGAGFTVGWVYWTGLVLAMSSEATAVSILLRGWFPALPL 120 EMTVA+P GSF T+T +AFG AGFTVGWVYWTG+VLAMSSEA AVSIL+R WFP + + Sbjct: 61 EMTVADPSPGSFFTFTRKAFGSRAGFTVGWVYWTGMVLAMSSEAAAVSILIRRWFPGISI 120 Query: 121 ALLGSGIIAGVTLLNLLGAKRLSRLESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVG 180 + LGS II +TLLNLLGA +LS+LES AV Sbjct: 121 SFLGSIIIIIITLLNLLGADKLSKLESGLAAVKLLAVVSFIIMALLLITGLLRLNTGAVD 180 Query: 181 LDVVRGQSLFPGGIAGIAGSMLMVMFTYAGFEVLGLAASETGNPGVTIPRAIRYTIVLLV 240 + V+ L PGGI IAGSML VMF YAGFE++GLAASET NP TIPRAI+YT++ LV Sbjct: 181 VKGVKLSFLLPGGIKSIAGSMLTVMFAYAGFEIIGLAASETDNPKETIPRAIKYTVLSLV 240 Query: 241 GLYLAAIIGLFLLLPPARVSEQVSPFVSALSLYGLGWAGTVMNIVLVSAILSTMLASVFG 300 LY+A+I + LL+P + E VSP V+AL+ +G+ W G V+NIV+V AILSTMLA++FG Sbjct: 241 ILYIASIYAVLLLIPTDILGENVSPMVAALNRWGMNWTGNVINIVMVIAILSTMLAAMFG 300 Query: 301 LGRMLRSLAEEGHTPAWMRDRADIPYRGILIS 332 +GRM+RSLA+E + P W++D +IPY+G+ S Sbjct: 301 IGRMIRSLADEAYAPRWLKDNTNIPYKGMAFS 332 >A5MYV6.1 A5MYV6_CLOK5 Predicted amino acid ABC transporter, permease protein Length = 482 Score = 350 bits (897), Expect = 3e-94, Method: Compositional matrix adjust. Identities = 194/332 (58%), Positives = 242/332 (72%) Query: 1 MGKEEKGLSAWGLTMLALGTVVGGSFFLGSSVAIRAAGPSVLLSYVIGGILVYFILSALS 60 M K+ KGLS LTM+ALGT++GGSFFLGSSVAI A GP +++SYV+GGILVYFILSALS Sbjct: 1 MEKKHKGLSVLQLTMMALGTIIGGSFFLGSSVAIHALGPFIIISYVLGGILVYFILSALS 60 Query: 61 EMTVANPVAGSFRTYTEQAFGRGAGFTVGWVYWTGLVLAMSSEATAVSILLRGWFPALPL 120 EMTVA+P GSF T+T +AFG AGFTVGWVYWTG+VLAMSSEA AVSIL+R WFP + + Sbjct: 61 EMTVADPSPGSFFTFTRKAFGSRAGFTVGWVYWTGMVLAMSSEAAAVSILIRRWFPGISI 120 Query: 121 ALLGSGIIAGVTLLNLLGAKRLSRLESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVG 180 + LGS II +TLLNLLGA +LS+LES AV Sbjct: 121 SFLGSIIIIIITLLNLLGADKLSKLESGLAAVKLLAVVSFIIMALLLITGLLRLNTGAVD 180 Query: 181 LDVVRGQSLFPGGIAGIAGSMLMVMFTYAGFEVLGLAASETGNPGVTIPRAIRYTIVLLV 240 + V+ L PGGI IAGSML VMF YAGFE++GLAASET NP TIPRAI+YT++ LV Sbjct: 181 VKGVKLSFLLPGGIKSIAGSMLTVMFAYAGFEIIGLAASETDNPKETIPRAIKYTVLSLV 240 Query: 241 GLYLAAIIGLFLLLPPARVSEQVSPFVSALSLYGLGWAGTVMNIVLVSAILSTMLASVFG 300 LY+A+I + LL+P + E VSP V+AL+ +G+ W G V+NIV+V AILSTMLA++FG Sbjct: 241 ILYIASIYAVLLLIPTDILGENVSPMVAALNRWGMNWTGNVINIVMVIAILSTMLAAMFG 300 Query: 301 LGRMLRSLAEEGHTPAWMRDRADIPYRGILIS 332 +GRM+RSLA+E + P W++D +IPY+G+ S Sbjct: 301 IGRMIRSLADEAYAPRWLKDNTNIPYKGMAFS 332 >A6M206.1 A6M206_CLOB8 Amino acid permease-associated region Length = 491 Score = 345 bits (885), Expect = 7e-93, Method: Compositional matrix adjust. Identities = 187/332 (56%), Positives = 238/332 (71%), Gaps = 1/332 (0%) Query: 1 MGKEEKGLSAWGLTMLALGTVVGGSFFLGSSVAIRAAGPSVLLSYVIGGILVYFILSALS 60 M K+ KGLSAW LTM+ALG+++GGSFFLGS+VAI AAGPSVL+SY++GGILVYFIL ALS Sbjct: 1 MKKKNKGLSAWQLTMMALGSIIGGSFFLGSAVAINAAGPSVLISYILGGILVYFILYALS 60 Query: 61 EMTVANPVAGSFRTYTEQAFGRGAGFTVGWVYWTGLVLAMSSEATAVSILLRGWFPALPL 120 EMTVANP +GSFRT+ +AFG G GF VGWVYW G+VL+MSSEATAVSILL W P + + Sbjct: 61 EMTVANPHSGSFRTFASEAFGPGTGFVVGWVYWIGMVLSMSSEATAVSILLNEWIPNISI 120 Query: 121 ALLGSGIIAGVTLLNLLGAKRLSRLESXXXXXXXXXXXXXXXXXXXXXXXXXXXXXRAVG 180 A+ G+ II GVTLLNLLGA +LS+L S AVG Sbjct: 121 AIGGTIIIVGVTLLNLLGADKLSKLTSGLSAIKLFAIISFIIISFLLVTGIIPGRT-AVG 179 Query: 181 LDVVRGQSLFPGGIAGIAGSMLMVMFTYAGFEVLGLAASETGNPGVTIPRAIRYTIVLLV 240 + + GI GIAG ML+V+F YAGFE++GLAASE +P TIP+AI YT+V L+ Sbjct: 180 AGELMREPFMSSGIGGIAGGMLIVVFAYAGFEIIGLAASEADDPRKTIPKAINYTVVSLI 239 Query: 241 GLYLAAIIGLFLLLPPARVSEQVSPFVSALSLYGLGWAGTVMNIVLVSAILSTMLASVFG 300 LY+ ++I L L+P A +SE +SP V+AL G+ WAG V+N+VL++AILS LAS+FG Sbjct: 240 SLYIISLIALLPLIPTADLSENISPMVAALDRLGITWAGNVINLVLITAILSASLASMFG 299 Query: 301 LGRMLRSLAEEGHTPAWMRDRADIPYRGILIS 332 + RMLRSLA+EG P +++D+ DIPY+ I+ S Sbjct: 300 IARMLRSLADEGDAPKFLKDKGDIPYKAIVFS 331 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.138 0.419 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,363,396,509 Number of extensions: 82048740 Number of successful extensions: 282214 Number of sequences better than 1.0e-05: 5809 Number of HSP's gapped: 279871 Number of HSP's successfully gapped: 9076 Length of query: 519 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 379 Effective length of database: 1,741,754,103 Effective search space: 660124805037 Effective search space used: 660124805037 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 134 (56.2 bits)