BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0444.0003.p (182 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C3AW37.1 C3AW37_BACMY Putative uncharacterized protein 234 3e-60 C2ZRM3.1 C2ZRM3_BACCE Putative uncharacterized protein 221 2e-56 C2ZA48.1 C2ZA48_BACCE Putative uncharacterized protein 221 2e-56 C2MMT7.1 C2MMT7_BACCE Putative uncharacterized protein 218 1e-55 Q6HGJ8.1 Q6HGJ8_BACHK Putative uncharacterized protein 214 3e-54 >C3AW37.1 C3AW37_BACMY Putative uncharacterized protein Length = 227 Score = 234 bits (597), Expect = 3e-60, Method: Compositional matrix adjust. Identities = 113/184 (61%), Positives = 148/184 (80%), Gaps = 2/184 (1%) Query: 1 VIITVGKTHSGKTTFAQKLEQHLHNSVVIDRDTHAEFINTYYKSMLPKQGANTLKNAISR 60 VI+TVGKTHSGKT FA+ LE+ L+NS V+D+D HAEFINT+Y+ + PKQG NTLK+AISR Sbjct: 33 VIMTVGKTHSGKTKFARALEKELNNSFVMDQDNHAEFINTFYEKLQPKQGPNTLKHAISR 92 Query: 61 TIIDYAVHETDLHLILCNANRGRKGRLDLLE-YFQPEGFVRVLVHFDIPDQILEARVAGS 119 I+DYA+ TDLHLI+CN+NR +K RL+LLE F FVR+LV+FDIPD +L+ RV+ S Sbjct: 93 LIVDYAIENTDLHLIVCNSNRNQKSRLNLLENLFTKNQFVRILVNFDIPDDVLQVRVSQS 152 Query: 120 QRSTAIFRSA-STFEEVLLRQQAETDHGDVIAPAEDEADYLFVIKDSSEVPATLQKIVDI 178 +RST IFR A S FEEVL+RQQAE+ + D++ P E EAD+LFVIKD+ +V + +++IV I Sbjct: 153 ERSTNIFRGAYSNFEEVLIRQQAESLNEDIVDPVEGEADHLFVIKDNEKVGSVIKEIVHI 212 Query: 179 AQNL 182 A+ L Sbjct: 213 AKRL 216 >C2ZRM3.1 C2ZRM3_BACCE Putative uncharacterized protein Length = 197 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/184 (58%), Positives = 146/184 (79%), Gaps = 2/184 (1%) Query: 1 VIITVGKTHSGKTTFAQKLEQHLHNSVVIDRDTHAEFINTYYKSMLPKQGANTLKNAISR 60 VIITVGKTHSGKTTFA+ LE+ + NS V+D+D AEFINT+Y+ + P +G NT K+ +S+ Sbjct: 9 VIITVGKTHSGKTTFARALEKEIPNSFVMDQDNQAEFINTHYEKLQPTKGPNTFKHGLSK 68 Query: 61 TIIDYAVHETDLHLILCNANRGRKGRLDLL-EYFQPEGFVRVLVHFDIPDQILEARVAGS 119 I+DYA T+LHLI+CN+NR R GR+ LL E F+ E +VR+LVHFDIPD +L RVA S Sbjct: 69 FIVDYAKEYTNLHLIICNSNRSRNGRMYLLNELFKKEKYVRILVHFDIPDDVLYERVARS 128 Query: 120 QRSTAIFR-SASTFEEVLLRQQAETDHGDVIAPAEDEADYLFVIKDSSEVPATLQKIVDI 178 ++ST IFR + S+F+EVL RQQAE+ H DV+ P E+EADYLFVI+DS +V +T+++IV + Sbjct: 129 KQSTNIFRGNYSSFKEVLNRQQAESLHEDVVHPVENEADYLFVIRDSKDVKSTIEEIVHL 188 Query: 179 AQNL 182 A++L Sbjct: 189 AEDL 192 >C2ZA48.1 C2ZA48_BACCE Putative uncharacterized protein Length = 197 Score = 221 bits (564), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 108/184 (58%), Positives = 146/184 (79%), Gaps = 2/184 (1%) Query: 1 VIITVGKTHSGKTTFAQKLEQHLHNSVVIDRDTHAEFINTYYKSMLPKQGANTLKNAISR 60 VIITVGKTHSGKTTFA+ LE+ + NS V+D+D AEFINT+Y+ + P +G NT K+ +S+ Sbjct: 9 VIITVGKTHSGKTTFARALEKEIPNSFVMDQDNQAEFINTHYEKLQPTKGPNTFKHGLSK 68 Query: 61 TIIDYAVHETDLHLILCNANRGRKGRLDLL-EYFQPEGFVRVLVHFDIPDQILEARVAGS 119 I+DYA T+LHLI+CN+NR R GR+ LL E F+ E +VR+LVHFDIPD +L RVA S Sbjct: 69 FIVDYAKEYTNLHLIICNSNRSRNGRMYLLNELFKKEKYVRILVHFDIPDDVLYERVARS 128 Query: 120 QRSTAIFR-SASTFEEVLLRQQAETDHGDVIAPAEDEADYLFVIKDSSEVPATLQKIVDI 178 ++ST IFR + S+F+EVL RQQAE+ H DV+ P E+EADYLFVI+DS +V +T+++IV + Sbjct: 129 KQSTNIFRGNYSSFKEVLNRQQAESLHEDVVHPVENEADYLFVIRDSKDVKSTIEEIVHL 188 Query: 179 AQNL 182 A++L Sbjct: 189 AEDL 192 >C2MMT7.1 C2MMT7_BACCE Putative uncharacterized protein Length = 197 Score = 218 bits (556), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 109/184 (59%), Positives = 141/184 (76%), Gaps = 2/184 (1%) Query: 1 VIITVGKTHSGKTTFAQKLEQHLHNSVVIDRDTHAEFINTYYKSMLPKQGANTLKNAISR 60 VIITVGKTHSGKTTFA+ LE+ L +S V+D+D AEFINT+Y+ + P +G NT K+ +S+ Sbjct: 9 VIITVGKTHSGKTTFAKALEKELPHSFVMDQDNQAEFINTHYEKLQPAEGPNTFKHGLSK 68 Query: 61 TIIDYAVHETDLHLILCNANRGRKGRLDLL-EYFQPEGFVRVLVHFDIPDQILEARVAGS 119 I+DYA T LHLI+CN+NR + GRL LL E F P +VR+LVHFDIPD +L RVA S Sbjct: 69 FIVDYAKEHTSLHLIICNSNRSKNGRLYLLNELFPPNEYVRILVHFDIPDDVLYERVARS 128 Query: 120 QRSTAIFRSA-STFEEVLLRQQAETDHGDVIAPAEDEADYLFVIKDSSEVPATLQKIVDI 178 RST IFR S+F+EVL RQQAE+ H DVI P E+EADYLFVI++S +V T+++IV + Sbjct: 129 TRSTNIFRGGYSSFKEVLDRQQAESLHNDVIDPVENEADYLFVIRNSKDVSFTIEEIVHL 188 Query: 179 AQNL 182 A++L Sbjct: 189 AKDL 192 >Q6HGJ8.1 Q6HGJ8_BACHK Putative uncharacterized protein Length = 230 Score = 214 bits (544), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 106/184 (57%), Positives = 141/184 (76%), Gaps = 2/184 (1%) Query: 1 VIITVGKTHSGKTTFAQKLEQHLHNSVVIDRDTHAEFINTYYKSMLPKQGANTLKNAISR 60 VIITVGKTHSGKTTFA++LE+ +S V+D+D AEFIN++Y+ + P +G NT K+ +S+ Sbjct: 42 VIITVGKTHSGKTTFARELEKEFPHSFVMDQDNQAEFINSHYEKLQPAEGTNTFKHGLSK 101 Query: 61 TIIDYAVHETDLHLILCNANRGRKGRLDLL-EYFQPEGFVRVLVHFDIPDQILEARVAGS 119 I+DYA T LHLI+CN+NR + GRL LL E F P +VR+LVHFD+PD +L RVA S Sbjct: 102 FIVDYAKEHTSLHLIICNSNRSKNGRLYLLNELFPPNEYVRILVHFDVPDNVLYERVARS 161 Query: 120 QRSTAIFR-SASTFEEVLLRQQAETDHGDVIAPAEDEADYLFVIKDSSEVPATLQKIVDI 178 RST IFR S S+F+EVL RQQAE+ H DV+ P E+EADYLFVI++S +V T+++IV + Sbjct: 162 TRSTNIFRGSYSSFKEVLDRQQAESFHEDVVDPVENEADYLFVIRNSKDVHFTIEEIVHL 221 Query: 179 AQNL 182 A+ L Sbjct: 222 AEVL 225 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.376 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 981,140,656 Number of extensions: 36562933 Number of successful extensions: 115740 Number of sequences better than 1.0e-05: 65 Number of HSP's gapped: 115612 Number of HSP's successfully gapped: 65 Length of query: 182 Length of database: 3,060,696,203 Length adjustment: 127 Effective length of query: 55 Effective length of database: 1,864,227,298 Effective search space: 102532501390 Effective search space used: 102532501390 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 127 (53.5 bits)