BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0041.p (452 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K5B6.1 B3K5B6_9BACI Putative uncharacterized protein 141 1e-31 C0ZK55.1 C0ZK55_BREBN Putative uncharacterized protein 100 3e-19 A7Z233.1 A7Z233_BACA2 YeaD 99 8e-19 A8FAH3.1 A8FAH3_BACP2 Putative uncharacterized protein yeaD 96 5e-18 B4AIA7.1 B4AIA7_BACPU Conserved protein YeaD 94 3e-17 >B3K5B6.1 B3K5B6_9BACI Putative uncharacterized protein Length = 432 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 92/269 (34%), Positives = 133/269 (49%), Gaps = 13/269 (4%) Query: 31 EWIRILSMAAVTGALYAWRGGETLLFLLTASXXXXXXXXXXXXXXPRKVTVTRSLSAVHP 90 EW+R +++ +V+ LY W GGE L + AS P ++T++ + S + Sbjct: 7 EWLRGIAIWSVSLGLYLWLGGEALRLVWWASTILLLGGAVTSLLGPTRITISHTSSPLCI 66 Query: 91 AAGDTLTVEVKVTFRTRIPLPWMVIADQWSGGTHQQLLFPGFRRSLAYTYSLHEVQRGVH 150 AGD++ + V V +R +PLPW++I D+ T+++LLFPG RR L YTY L++V RGV Sbjct: 67 QAGDSVQMTVHVAYRCILPLPWLIITDRIGSRTYRKLLFPGMRRRLEYTYRLNQVPRGVW 126 Query: 151 RLHGCSVSWGDLLGLF-TGGCQSGSGDSFKVRPRPL-YVGRTAPYSSVKPGDTVSSSRTR 208 + WGDL G F T V P+P + P R Sbjct: 127 SSIYSEMEWGDLFGWFRTNRSILSDSGGLIVLPKPAEWPVAQMPMHGSDMDTEDERVRFN 186 Query: 209 NYSAEAGE-IREYAPGDPLSRIHWKNTARKGTLQSRVPEREEGRMSCIVLANSSGEYEIP 267 ++ G +R+Y PGDP++RIHWKN+A+ G LQS +P G +VL S YE Sbjct: 187 VWNEMRGSGVRDYVPGDPMNRIHWKNSAKLGRLQSFMPHEGFGARQGVVLDTSLQGYE-- 244 Query: 268 CGALTPRGQRGDPPAP-FERAVSAAMGLL 295 G P FE AVSAA G++ Sbjct: 245 -------GHEARKPQEVFEEAVSAAAGMV 266 >C0ZK55.1 C0ZK55_BREBN Putative uncharacterized protein Length = 401 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 90/373 (24%), Positives = 152/373 (40%), Gaps = 28/373 (7%) Query: 33 IRILSMAAVTGALYAWRGGETLLFLLTASXXXXXXXXXXXXXXPRKVTVTRSLSAVHPAA 92 ++ +++ VT ++GG + FL +S K+ V R L Sbjct: 9 LKAIALVLVTYVFAKFQGGFSSWFLFYSSLVFLLYEIVAYVLMFTKLEVERELDRNRLQD 68 Query: 93 GDTLTVEVKVTFRTRIPLPWMVIAD----QWSGGT--HQQLLFPGFRRSLAYTYSLHEVQ 146 G+ + V +++ R PL W +I + + +G H+QL+FP F+R + + Y + V Sbjct: 69 GEDVIVTIRLRRRIWFPLGWNMIMEPLPARLAGVYEPHRQLIFPWFKREVEFRYVIPNVP 128 Query: 147 RGVHRLHGCSVSWGDLLGLFTGGCQSGSGDSFKVRPRPLYVGRTAPYSSVKPGDTVSSSR 206 RG + L C VS GD G F F V P+ + A G S R Sbjct: 129 RGYYHLDECVVSGGDFFGFFERRKVYSISQEFLVYPKYKELTHWALGDGSFSGTVHVSHR 188 Query: 207 TRNYSAEAGEIREYAPGDPLSRIHWKNTARKGTLQSRVPEREEGRMSCIVLANSSGEYEI 266 + A +R+Y GD LS+IHW+ +AR L+++ E + + L Y+ Sbjct: 189 RSDDVAAVRGVRDYHRGDRLSQIHWRASARGTGLKTKEFEHQAMNQAVFFLDVEKASYQ- 247 Query: 267 PCGALTPRGQRGDPPAPFERAVSAAMGLLLAAEQTGS-----YVQFFSGGWPEGMAKHEG 321 G P FE AV A L+ A + Y Q P G++ Sbjct: 248 -----------GKPVHLFETAVKLAASLIAYANRNQYHYGLVYKQTDRISIPPGLSHAHF 296 Query: 322 LGQIPSRVQDMLTEITPDGGRSLSALLEDASRGWIPGMTAVVITGRLEEESARTLARFLV 381 L RV D L + P+G + ++ + G+T ++IT +E+ L Sbjct: 297 L-----RVFDQLARVAPEGQELFARIVGREALEQPQGVTLIIITPHVEKTLISRLVTLAQ 351 Query: 382 QGVKVELYYVWDQ 394 +G +V+L+ + ++ Sbjct: 352 KGRRVQLFLMQNE 364 >A7Z233.1 A7Z233_BACA2 YeaD Length = 394 Score = 99.0 bits (245), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 84/286 (29%), Positives = 125/286 (43%), Gaps = 27/286 (9%) Query: 34 RILSMAAVTGALYAW---RGGETLLFLLTASXXXXXXXXXXXXXXPRKVTVTRSLSAVHP 90 ++L +A +T A++++ +GG FL A R V R +S+ Sbjct: 13 KLLMLAVLTAAVFSYAMFQGGFVSWFLFYAFLPFTVYAGLVAVYPLRAFQVARDVSSAQL 72 Query: 91 AAGDTLTVEVKVTFRTRIPLPWMVIADQW-----SGGTHQQLLFPGFRRSLAYTYSLHEV 145 +GD L+V +++T R PL +MVI D + +QL+FP F+R L Y L +V Sbjct: 73 TSGDRLSVTIRLTRRLPFPLTYMVIEDVMPETLGERRSAKQLVFPWFQRKLTLQYELPQV 132 Query: 146 QRGVHRLHGCSVSWGDLLGLFTGGCQSGSGDSFKVRPRPLYVGRTAPYSSVKPGDTVSSS 205 RG H LH V GD+LGL D+ V P V +S + G + Sbjct: 133 PRGEHHLHTIRVRTGDVLGLLDKTASFSVTDTVLVFPAYGSVHYKPQAASGEEGTAAGAP 192 Query: 206 RTRNYSAEAGEIREYAPGDPLSRIHWKNTARKGTLQSRVPEREEGRMSCIVLANSSGEYE 265 + SA A +R Y PGD S + WK +AR+ L ++ + + ++ I+L Sbjct: 193 FQVHRSAMAASVRNYQPGDRFSALDWKTSARRNELMTKEFDPLQS-VNMILL-------- 243 Query: 266 IPCGALTPRGQRGDPPAPFERAVSAAMGLLLAAEQTGSYVQFFSGG 311 + C P FE AVSA+ LL A GS F S G Sbjct: 244 LDC----------RPSPSFEAAVSASASLLYTALVKGSPAGFISLG 279 >A8FAH3.1 A8FAH3_BACP2 Putative uncharacterized protein yeaD Length = 396 Score = 96.3 bits (238), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 91/358 (25%), Positives = 148/358 (41%), Gaps = 39/358 (10%) Query: 32 WIRILSMAAVTGALYAW---RGGETLLFLLTASXXXXXXXXXXXXXXPRKVTVTRSLSAV 88 W+R++ + +T A++ + +GG FL A P +VT R+L Sbjct: 12 WLRVMMLIILTAAVFCYAMFQGGFVSWFLFYA-FLPYALYALLFALVPLRVTAKRTLQQT 70 Query: 89 HPAAGDTLTVEVKVTFRTRIPLPWMVIADQWSGGTH-------QQLLFPGFRRSLAYTYS 141 AGD L+V++++ P +++I D H +Q+LFP FR++ ++Y Sbjct: 71 RLKAGDVLSVDLEIKRTNPFPYVYVLIEDDPPDTFHLKEQIEMKQMLFPWFRKTWRFSYQ 130 Query: 142 LHEVQRGVHRLHGCSVSWGDLLGLFTGGCQSGSGDSFKVRPRPLYVGRTAPYSSVKPGDT 201 L++V RG H L + GD+ G V P+ L + + S + G Sbjct: 131 LNDVMRGEHHLSAVRIKTGDMFGFVEKEVIIPLEKKLLVYPKMLDLQVESAESVNENGGK 190 Query: 202 VSSSRTRNYSAEAGEIREYAPGDPLSRIHWKNTARKGTLQSRVPEREEGRMSCIVLANSS 261 S + +REY GD + + WK TAR+G L ++ E+ + + +V A+ + Sbjct: 191 AVHSWLNEPTHVTTGVREYQQGDRFAWVDWKTTARRGQLMTKEFEQNQTK-DLVVFADFT 249 Query: 262 GEYEIPCGALTPRGQRGDPPAPFERAVSAAMGLLLAAEQTGSYVQFFSGGWPEGMAKHEG 321 E A FE VS +L +A + G +G P G Sbjct: 250 DE------------------AAFETVVSITASVLQSAVKKGVP----AGLVPLGDQHVFR 287 Query: 322 LGQIPSRVQDM---LTEITPDGGRSLSALLEDASRGWIPGMTAVVITGRLEEESARTL 376 + Q S +QD+ LT + R+L AS G V+TG L EE A +L Sbjct: 288 VDQGESHLQDLLYFLTMVQHHPSRALECKAFAASEYQYAG--KYVVTGHLHEELAESL 343 >B4AIA7.1 B4AIA7_BACPU Conserved protein YeaD Length = 396 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 93/360 (25%), Positives = 149/360 (41%), Gaps = 43/360 (11%) Query: 32 WIRILSMAAVTGALYAW---RGGETLLFLLTASXXXXXXXXXXXXXXPRKVTVTRSLSAV 88 W+R++ + +T ++ + +GG FL A P + TV R+L Sbjct: 12 WLRVMMLIILTATVFCYAMFQGGFVSWFLFYA-FLPYTLYALLFALVPLRATVKRTLQQT 70 Query: 89 HPAAGDTLTVEVKVTFRTRIPLPWMVIADQWSGGTH-------QQLLFPGFRRSLAYTYS 141 AGD L+V++++ P +++I D H +Q+LFP FR++ ++Y Sbjct: 71 RLKAGDVLSVDLEIKRTNPFPYVYVLIEDDPPDTFHLKEQIEMKQMLFPWFRKTWRFSYQ 130 Query: 142 LHEVQRGVHRLHGCSVSWGDLLGLFTGGCQSGSGDSFKVRPRPLYVGRTAPYSSVKPGDT 201 L++V RG H L + GD+ G V P+ L + + S + G Sbjct: 131 LNDVMRGEHHLSAVRIKTGDMFGFVEKEVIIPLEKKLLVYPKMLDLQVESAESLNENGGK 190 Query: 202 VSSSRTRNYSAEAGEIREYAPGDPLSRIHWKNTARKGTLQSRVPEREEGRMSCIVLANSS 261 S + +REY GD + + WK TAR+G L ++ E+ + + +V A+ + Sbjct: 191 AVHSWLNEPTHVTTGVREYQQGDRFAWVDWKTTARRGQLMTKEFEQNQTK-DLVVFADFT 249 Query: 262 GEYEIPCGALTPRGQRGDPPAPFERAVSAAMGLLLAAEQTGSYVQFFSGGWPEGMAKHEG 321 E A FE VS A +L +A + G SG P G Sbjct: 250 DE------------------AVFESVVSIAASVLQSAVKKG----LPSGLVPLGDQHAFR 287 Query: 322 LGQIPSRVQDMLTEIT-----PDGGRSLSALLEDASRGWIPGMTAVVITGRLEEESARTL 376 + Q +QDML +T P + AL AS G V+TG+L+EE A L Sbjct: 288 VDQGELHLQDMLYYLTRVQHQPSRVQEYKAL--AASEYQHSG--KYVVTGQLQEELAANL 343 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.134 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,780,645,387 Number of extensions: 118469208 Number of successful extensions: 295682 Number of sequences better than 1.0e-05: 140 Number of HSP's gapped: 295646 Number of HSP's successfully gapped: 140 Length of query: 452 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 313 Effective length of database: 1,751,175,118 Effective search space: 548117811934 Effective search space used: 548117811934 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)