BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0040.p (493 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K599.1 B3K599_9BACI Polysaccharide deacetylase 361 9e-98 B1D8U9.1 B1D8U9_9BACL Polysaccharide deacetylase 238 1e-60 A1HTR9.1 A1HTR9_9FIRM Polysaccharide deacetylase 195 1e-47 B8FYX0.1 B8FYX0_DESHD Polysaccharide deacetylase 188 1e-45 Q24MV4.1 Q24MV4_DESHY Putative uncharacterized protein 187 2e-45 >B3K599.1 B3K599_9BACI Polysaccharide deacetylase Length = 437 Score = 361 bits (927), Expect = 9e-98, Method: Compositional matrix adjust. Identities = 185/374 (49%), Positives = 237/374 (63%), Gaps = 6/374 (1%) Query: 120 AVKNGAAVSKVPAKPTLPAQTKQKTVYLTFDDGPSKITPKVLEILRRQGVKATFFVLGEQ 179 A K +AV+ P + + KTVYLTFDDGPS +T VL+IL+R+G+K TFFVLG++ Sbjct: 70 AFKKPSAVNAAPVQ--YKEKPSDKTVYLTFDDGPSDLTLDVLDILKREGIKGTFFVLGKE 127 Query: 180 AEQRPELISAIWEQGHAIGNHTYNHNYRDLYSSFTEFWSQIKQTEEIVRNITGVRPQLVR 239 AE RPE+I+ I+E+GH IGNHTY+H Y +LY F +FW QIK+TEEI+R ITG RPQLVR Sbjct: 128 AETRPEIINRIYEEGHVIGNHTYDHRYDELYGHFQDFWGQIKKTEEIIRLITGERPQLVR 187 Query: 240 APGGTFGHFDKTYFRLLAQAGYSVMDWTADSGDSRRKGVPAADILRESVADLTASRVILL 299 APGGT GHFD+ YF+ + Q GY V DW DSGDSR +GVPA DI++ + + I+L Sbjct: 188 APGGTAGHFDEAYFQYMKQGGYHVFDWNVDSGDSRYRGVPAKDIVKGATTKVNGKEAIVL 247 Query: 300 LHDGGGHEQSAKALPEIIKRYKAAGYTFGVLDGEVQPVQFRVSASAAGTGHAQPSKAWIA 359 LHDG GH +S KALP+II YK GY F VL E +PVQFR +A +QPS+ W+ Sbjct: 248 LHDGKGHGESVKALPDIISYYKKQGYAFDVLSPETEPVQFRAQQTARKA--SQPSQQWVR 305 Query: 360 ANILPNRELFTPGKALALEVGPLEAKLLPGEYTISGGQYKVPLRAAVERLGGKVSWEVSS 419 ++ N LF G+ LA+E G LE GEY + G+ VPLRA VERLGG VSW+ + Sbjct: 306 EHVAVNAALFGTGRTLAVEFGGLETAFAAGEYKLVDGRLMVPLRALVERLGGSVSWKSHN 365 Query: 420 RSGRVVWNGRTILADAANQQLTITDGDGRQQIRSADVQLIGSSLWVSLRGLLDAAGHPPL 479 ++ +V G AD L G+ S+DV LIG + W+ LR LD +G P Sbjct: 366 KTVQVTLAGNRWEADPVGGLLFPMQTGGKPV--SSDVHLIGGTAWIPLREALDFSGRPVT 423 Query: 480 TAAVTAEERRVKTL 493 E RV TL Sbjct: 424 RVTYEEGEYRVLTL 437 >B1D8U9.1 B1D8U9_9BACL Polysaccharide deacetylase Length = 431 Score = 238 bits (606), Expect = 1e-60, Method: Compositional matrix adjust. Identities = 120/282 (42%), Positives = 174/282 (61%), Gaps = 10/282 (3%) Query: 144 TVYLTFDDGPSKITPKVLEILRRQGVKATFFVLGEQAEQRPELISAIWEQGHAIGNHTYN 203 TVYLTFDDGPS+ T +VL IL+R+GVK TFF+LG++ +Q P++ + ++GHAIGNHTY+ Sbjct: 88 TVYLTFDDGPSEKTKEVLAILKREGVKGTFFMLGKEVKQYPDIARQVAKEGHAIGNHTYD 147 Query: 204 HNYRDLYSSFTEFWSQIKQTEEIVRNITGVRPQLVRAPGGTFGHFDKTYFRLLAQAGYSV 263 H Y++LYSSF+ F Q+ T++ + +TG+R L+RAPGGTFG+FD+ Y+ LA+AGY V Sbjct: 148 HVYKELYSSFSAFAKQVMDTDDEIYKVTGIRTNLLRAPGGTFGNFDQGYYDALAKAGYIV 207 Query: 264 MDWTADSGDSRRKGVPAADILRESVADLTASRVILLLHDGGGHEQSAKALPEIIKRYKAA 323 DW DSGDS R GVPA +I+ +S+V++L+HD H +S KALPE+I +K Sbjct: 208 NDWNVDSGDSTRVGVPAKEIINTVKGSRLSSKVVVLMHDSSIHGESVKALPEVIDFFKKK 267 Query: 324 GYTFGVLDGEVQPVQFRVSASAAGTGHAQPSKAWIAANILPNRELFT-------PGKALA 376 GY F VL +V+P+QFR+S S +P + L T ++L Sbjct: 268 GYQFAVLTDQVKPIQFRLSPSMK---WKRPKVTAMETQTLVQYTTRTRTNLTEQNTQSLI 324 Query: 377 LEVGPLEAKLLPGEYTISGGQYKVPLRAAVERLGGKVSWEVS 418 + G + P +Y + G VPLR L G + +++ Sbjct: 325 IHAGGEDIPFAPQDYRMFNGTINVPLRQLALGLHGIIRLDMA 366 >A1HTR9.1 A1HTR9_9FIRM Polysaccharide deacetylase Length = 303 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 93/208 (44%), Positives = 133/208 (63%), Gaps = 3/208 (1%) Query: 132 AKPTLPAQTKQKTVYLTFDDGPS-KITPKVLEILRRQGVKATFFVLGEQAEQRPELISAI 190 A P + +K VYLTFDDGP + TPKVL+ILR+ G+KATFFV+G Q EQ P ++ Sbjct: 94 ALPVVTPYYAEKIVYLTFDDGPDPENTPKVLDILRQYGIKATFFVVGSQVEQYPHILKRT 153 Query: 191 WEQGHAIGNHTYNHNYRDLYSSFTEFWSQIKQTEEIVRNITGVRPQLVRAPGGTFGHFDK 250 +E+GHAIGNH+YNH Y LY S + Q+ QT+++++N+ GVRP++ RAPGG+ G F K Sbjct: 154 FEEGHAIGNHSYNHIYSQLYQSAHTYIRQLHQTDDVIKNVIGVRPRISRAPGGSAGSFTK 213 Query: 251 TYFRLLAQAGYSVMDWTADSGDSRRKGVP--AADILRESVADLTASRVILLLHDGGGHEQ 308 Y++ L Q GY + W SGD+ P +I+R+ + I+L+HDG GH + Sbjct: 214 EYWKALEQDGYVEIGWNISSGDASSAKAPQIVDNIIRQMRNKFLWNHAIVLMHDGRGHSE 273 Query: 309 SAKALPEIIKRYKAAGYTFGVLDGEVQP 336 + KALP II ++ G+ F V++ E P Sbjct: 274 TVKALPHIITYFQEQGFEFRVINLETPP 301 >B8FYX0.1 B8FYX0_DESHD Polysaccharide deacetylase Length = 357 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 89/198 (44%), Positives = 127/198 (64%), Gaps = 1/198 (0%) Query: 143 KTVYLTFDDGPSKITPKVLEILRRQGVKATFFVLGEQAEQRPELISAIWEQGHAIGNHTY 202 K VYLT DDGPS+ T +L+IL+++ V ATFFV+G Q E+ PEL+ +EQG+AIGNHTY Sbjct: 154 KIVYLTIDDGPSENTVHILDILKQEEVNATFFVIGTQVERYPELLKKAYEQGNAIGNHTY 213 Query: 203 NHNYRDLYSSFTEFWSQIKQTEEIVRNITGVRPQLVRAPGGTFGHFDKTYFRLLAQAGYS 262 +HNY ++Y S F + +K+ EE++ + GVRP+++R PGGT G+F +Y+ + Y Sbjct: 214 SHNYSEIYQSPEAFVANLKKNEELIYKLIGVRPKVIRTPGGTHGNFHISYYNAVDAQDYL 273 Query: 263 VMDWTADSGDSRRKGVPAADILRESVADLTA-SRVILLLHDGGGHEQSAKALPEIIKRYK 321 V DW +GD+ VPA +++ R+ILL+HD G + ALP+II+ K Sbjct: 274 VYDWNVSTGDASAPLVPAETLIKNVKEQAPGRDRIILLMHDAPGKWTTVDALPKIIRFLK 333 Query: 322 AAGYTFGVLDGEVQPVQF 339 GY FGVL EV P+ F Sbjct: 334 EQGYEFGVLSPEVAPILF 351 >Q24MV4.1 Q24MV4_DESHY Putative uncharacterized protein Length = 316 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 89/198 (44%), Positives = 127/198 (64%), Gaps = 1/198 (0%) Query: 143 KTVYLTFDDGPSKITPKVLEILRRQGVKATFFVLGEQAEQRPELISAIWEQGHAIGNHTY 202 K VYLT DDGPS+ T +L+IL+++ V ATFFV+G Q E+ PEL+ +EQG+AIGNHTY Sbjct: 113 KIVYLTIDDGPSENTVHILDILKQEEVNATFFVIGTQVERYPELLKKAYEQGNAIGNHTY 172 Query: 203 NHNYRDLYSSFTEFWSQIKQTEEIVRNITGVRPQLVRAPGGTFGHFDKTYFRLLAQAGYS 262 +HNY ++Y S F + +K+ EE++ + GVRP+++R PGGT G+F +Y+ + Y Sbjct: 173 SHNYSEIYQSPEAFVANLKKNEELIYKLIGVRPKVIRTPGGTHGNFHISYYNAVDAQDYL 232 Query: 263 VMDWTADSGDSRRKGVPAADILRESVADLTA-SRVILLLHDGGGHEQSAKALPEIIKRYK 321 V DW +GD+ VPA +++ R+ILL+HD G + ALP+II+ K Sbjct: 233 VYDWNVSTGDASAPLVPAETLIKNVKEQAPGRDRIILLMHDAPGKWTTVDALPKIIRFLK 292 Query: 322 AAGYTFGVLDGEVQPVQF 339 GY FGVL EV P+ F Sbjct: 293 EQGYEFGVLSPEVAPILF 310 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.317 0.133 0.389 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,842,593,050 Number of extensions: 114624926 Number of successful extensions: 300758 Number of sequences better than 1.0e-05: 2475 Number of HSP's gapped: 296914 Number of HSP's successfully gapped: 2478 Length of query: 493 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 353 Effective length of database: 1,741,754,103 Effective search space: 614839198359 Effective search space used: 614839198359 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)