BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0037.p (312 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q65IN1.1 Q65IN1_BACLD YobV 280 8e-74 B1HUW4.1 B1HUW4_LYSSC YobV 248 6e-64 A3I3R0.1 A3I3R0_9BACI YobV 244 1e-62 Q0AX84.1 Q0AX84_SYNWW YobV 241 5e-62 B4AKZ9.1 B4AKZ9_BACPU Putative transcriptional regulator 223 2e-56 >Q65IN1.1 Q65IN1_BACLD YobV Length = 311 Score = 280 bits (717), Expect = 8e-74, Method: Compositional matrix adjust. Identities = 146/285 (51%), Positives = 187/285 (65%), Gaps = 2/285 (0%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +KIDRLL+IVILL+N+ VQAKELA MFEVSVRTIYRDI++IN AGIP+VT QGA GGI Sbjct: 1 MKIDRLLAIVILLINKRQVQAKELAGMFEVSVRTIYRDIEAINQAGIPIVTSQGAGGGIS 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQSVSS-YGAGEHNLLMEKITSVIPPSKSHAFRSKTT 119 +ME +RL+ +L+ ELA I TAL+SVSS Y H +EKI ++ + FR KT Sbjct: 61 IMERFRLENKLLSADELAAITTALESVSSTYEVLHHGSALEKIRFLVSEEEMPEFRKKTE 120 Query: 120 QLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGAGW 179 + VD S WG ++E++ LL EA D + AV+F+YV+ +GQ R EP+TLV KG W Sbjct: 121 KWFVDISSWGESPVIKEKIRLLDEASDSTRAVSFNYVDREGQTGKRKAEPHTLVLKGRHW 180 Query: 180 YLYGFCIQRQDFRLFKLLRMKSLVKEARSFERLDIPLQDLPWTEGWKEPLNTQTVVLHFS 239 YLY FC++RQ FR FKLLRMK + FER ++ L LPW W +P N V L Sbjct: 181 YLYAFCLKRQAFRFFKLLRMKDVRMLEEKFERKEVDLSSLPWETSWYKPDNMTEVTLLIK 240 Query: 240 AEGRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFGT 284 G LA ++F E L + NG + ++Y E+ WLYGFLL FGT Sbjct: 241 PSGESLAREWFGSEALTYE-NGQCVATISYPEDQWLYGFLLQFGT 284 >B1HUW4.1 B1HUW4_LYSSC YobV Length = 308 Score = 248 bits (633), Expect = 6e-64, Method: Compositional matrix adjust. Identities = 129/310 (41%), Positives = 193/310 (62%), Gaps = 8/310 (2%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +K++RLL+++++L+NR V A+ELA++F VSVRTIYRDI++++ AGIPV++ QG +GGI Sbjct: 1 MKLERLLTMIMILINRKKVTAQELAELFNVSVRTIYRDIETLSCAGIPVISQQGVHGGIS 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQSVSSYGAGEHNL-LMEKITSVIPPSKSHAFRSKTT 119 L++GYR+D+ VLT+ ELA + A++S + H L ++EK+TS+ + H ++ Sbjct: 61 LIDGYRVDKQVLTKEELASLTIAIKSALTTYEDSHALAVLEKLTSI---ADDHVTQT-ID 116 Query: 120 QLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGAGW 179 L VD SPWG +E ++ LK A++ V+F Y A G+++ R+VEP+T+V KG W Sbjct: 117 HLFVDLSPWGPNILFKEHITSLKSAIENRHCVSFTYTTAHGELTKRVVEPHTIVQKGKTW 176 Query: 180 YLYGFCIQRQDFRLFKLLRMKSLVKEARSFERLDIPLQDLPWTEGWKEPLNTQTVVLHFS 239 YLYG+C R DFRLFKL R+K+L++E FER +I L +LPW + W +P N +V+ F Sbjct: 177 YLYGYCTLRMDFRLFKLARIKNLMQEDLHFERKEINLSELPWGKEWYQPQNVVDLVISFD 236 Query: 240 AEGRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFGTXXXXXXXXXXXXXXA 299 L E+ F ++ + YI + E+ WLYGFLLSFG Sbjct: 237 TAITTLVEESFGVAYVDHGQDKIYI---SIPEDEWLYGFLLSFGNRIKVLEPPHIRDILQ 293 Query: 300 GLAAEIAAKY 309 A EIA Y Sbjct: 294 KRAHEIAQLY 303 >A3I3R0.1 A3I3R0_9BACI YobV Length = 309 Score = 244 bits (622), Expect = 1e-62, Method: Compositional matrix adjust. Identities = 123/311 (39%), Positives = 193/311 (62%), Gaps = 8/311 (2%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +K++RLL+++++L+NR V A+ELA++F VSVRTIYRDI++++ AG+PV++ QG +GGI Sbjct: 1 MKLERLLTMIMILINRKKVTAQELAEVFNVSVRTIYRDIETLSCAGVPVISQQGVHGGIS 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQS-VSSYGAGEHNLLMEKITSVIPPSKSHAFRSKTT 119 L++GYR+D+ +LT+ EL + A++S +++Y ++EK+TS+ + H +S Sbjct: 61 LIDGYRVDKQILTKDELTSLTIAIKSALTTYEDSHAEAVLEKLTSI---ADDHVKQS-MD 116 Query: 120 QLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGAGW 179 L +D SPWG +E +++LK A++ V+F Y G+++ R+VEP+TLV KG W Sbjct: 117 HLFIDLSPWGPNILFKEHITILKSAIENRHCVSFTYSTTHGELTRRVVEPHTLVQKGKTW 176 Query: 180 YLYGFCIQRQDFRLFKLLRMKSLVKEARSFERLDIPLQDLPWTEGWKEPLNTQTVVLHFS 239 YLYG+C R DFRLFKL R+K+L++E +ER +I L +LPW + W +P N +V+ F Sbjct: 177 YLYGYCTLRMDFRLFKLARIKNLMQEDLHYERKEINLSELPWGKEWYQPENVVDLVISFD 236 Query: 240 AEGRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFGTXXXXXXXXXXXXXXA 299 L E+ F E ++ + ++ E+ WLYGFLLSFG Sbjct: 237 MAVTTLVEESFGVEFVDHKQAK---INISIPEDEWLYGFLLSFGNRIKVIEPPHIRDILQ 293 Query: 300 GLAAEIAAKYK 310 A EI YK Sbjct: 294 KRAQEIVQLYK 304 >Q0AX84.1 Q0AX84_SYNWW YobV Length = 311 Score = 241 bits (616), Expect = 5e-62, Method: Compositional matrix adjust. Identities = 125/310 (40%), Positives = 193/310 (62%), Gaps = 2/310 (0%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +KIDRL+SI+I+L+ R VQAKELA+MF VSVRTI RD+D+IN GIP++TYQG NGGI Sbjct: 1 MKIDRLISIIIVLLRRERVQAKELAEMFGVSVRTILRDVDTINLGGIPIITYQGVNGGIS 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQSV-SSYGAGEHNLLMEKITSVIPPSKSHAFRSKTT 119 + EGYRLD++VL+ ++A + + L+ V +S ++L EK+ + + S+ K+ Sbjct: 61 IAEGYRLDKSVLSAGDMATLISTLKGVAASIPDSRFDILAEKLKNPLSTSQLELLDLKSR 120 Query: 120 QLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGAGW 179 Q+I+D SPWG L+ +++LL++A++ + F Y++A G S R VEPY L+ KG W Sbjct: 121 QMIIDLSPWGTNEQLKGKITLLRQAIENYREIEFAYIDAAGTRSIRQVEPYALLLKGQSW 180 Query: 180 YLYGFCIQRQDFRLFKLLRMKSLVKEARSFERLDIPLQDLPWTEGWKEPLNTQTVVLHFS 239 YL+ +C+ RQDFRLFKL+R+K+L +++ ++P++ + W+E + L F Sbjct: 181 YLFAWCLLRQDFRLFKLIRIKNLQLVNITYQPREVPMEQDYFENQWQETARPVELDLLFD 240 Query: 240 AEGRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFGTXXXXXXXXXXXXXXA 299 E + E+ F + + D +G +V++ ENNWLYG+LLSFG A Sbjct: 241 KEMENVVEECFGGDIMRQD-DGRIMVKVCLPENNWLYGYLLSFGGGMEVVNPPHIRSILA 299 Query: 300 GLAAEIAAKY 309 +A +I Y Sbjct: 300 AIAEKIYKTY 309 >B4AKZ9.1 B4AKZ9_BACPU Putative transcriptional regulator Length = 310 Score = 223 bits (568), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 119/285 (41%), Positives = 170/285 (59%), Gaps = 5/285 (1%) Query: 1 VKIDRLLSIVILLMNRPLVQAKELADMFEVSVRTIYRDIDSINGAGIPVVTYQGANGGIG 60 +KIDR+LS V+LL+++ VQAK LA++ EVS RTIYRDID+IN AGIPVVT QGA GGI Sbjct: 1 MKIDRILSTVMLLISKKQVQAKGLAELHEVSTRTIYRDIDTINQAGIPVVTTQGAGGGIS 60 Query: 61 LMEGYRLDRNVLTERELADIFTALQSVSS-YGAGEHNLLMEKITSVIPPSKSHAFRS-KT 118 L+E YRL++ + T+ ++ I TAL+S++S Y E +++KI S+IP +H + K Sbjct: 61 LVEDYRLEKKLFTDDDIEVILTALESMTSAYSFKESEHVLKKIKSLIP---THTCENEKQ 117 Query: 119 TQLIVDFSPWGLQGPLEERLSLLKEALDESTAVAFDYVNADGQISHRIVEPYTLVHKGAG 178 + +D S WG E++L L+ A + F Y NA G+ R VEPYTLV KG Sbjct: 118 HHVFIDLSSWGKDSQAEKKLQLIHTAASAHQYIQFTYRNAKGETLPRKVEPYTLVLKGRH 177 Query: 179 WYLYGFCIQRQDFRLFKLLRMKSLVKEARSFERLDIPLQDLPWTEGWKEPLNTQTVVLHF 238 WYLY FC ++ FRLFKL RM LV + F+ I ++ PW + W+E + +V L Sbjct: 178 WYLYAFCCVKKAFRLFKLTRMTGLVTISGYFQPKRIKNEEKPWNDSWQEQPSVSSVTLRL 237 Query: 239 SAEGRYLAEDYFDCEELEADGNGGYIVRLAYAENNWLYGFLLSFG 283 + +++ D EL +G Y+ + ++WL FL G Sbjct: 238 TEASVGKVKEWVDENELNVCSDGTYLATITVPLDDWLNSFLFHLG 282 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.139 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,724,431,461 Number of extensions: 71067643 Number of successful extensions: 163498 Number of sequences better than 1.0e-05: 917 Number of HSP's gapped: 162751 Number of HSP's successfully gapped: 917 Length of query: 312 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 177 Effective length of database: 1,788,859,178 Effective search space: 316628074506 Effective search space used: 316628074506 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 131 (55.1 bits)