BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0035.p (151 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B1DHG2.1 B1DHG2_9BACL Transcriptional regulator, MarR family 121 2e-26 Q4EEA0.1 Q4EEA0_LISMO Transcriptional regulator, MarR family 105 2e-21 Q92B91.1 Q92B91_LISIN Lin1659 protein 104 2e-21 A0AJ70.1 A0AJ70_LISW6 Complete genome 103 5e-21 Q71Z50.1 Q71Z50_LISMF Transcriptional regulator, MarR family 103 7e-21 >B1DHG2.1 B1DHG2_9BACL Transcriptional regulator, MarR family Length = 146 Score = 121 bits (303), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 58/142 (40%), Positives = 101/142 (71%) Query: 6 EQQLDDIFSSFRCIIHNFQQLMWKDAEKLNITSTQLMVLRKLEAHPDVGITELADLLHLG 65 EQ++ IF ++R I F Q++ K A K N+T+ QL+VLR L P++ ++ELA+ L++G Sbjct: 3 EQRIVGIFQAYREINQVFFQILSKSASKHNLTALQLLVLRVLHESPEIRMSELAEKLNVG 62 Query: 66 NSAASGVVDRMVKAGLITRQRSESDRRIFKLAMTDKGREIREQSKQSLRSHLEPLVNIPP 125 NS SG+VDRMVKAG++ R+R+E+DRR + +T++G+E+ ++ ++ + + PL+++ Sbjct: 63 NSTMSGIVDRMVKAGILERERTEADRRAMTMKLTERGKELWRETDETRMNMMRPLLSMTE 122 Query: 126 EDARELLRLHREIITILEQGRE 147 +D REL RL E++ +L+Q +E Sbjct: 123 QDHRELSRLQNEVLRLLKQSKE 144 >Q4EEA0.1 Q4EEA0_LISMO Transcriptional regulator, MarR family Length = 146 Score = 105 bits (261), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 88/139 (63%) Query: 6 EQQLDDIFSSFRCIIHNFQQLMWKDAEKLNITSTQLMVLRKLEAHPDVGITELADLLHLG 65 E+ + ++ SFR + ++ ++A IT+TQL+ +R+L+ ++ + ELA+ + LG Sbjct: 3 EKLVKEVIFSFREVQRKTHHVLAEEAANREITTTQLLAIRELQKESELTLGELAERMKLG 62 Query: 66 NSAASGVVDRMVKAGLITRQRSESDRRIFKLAMTDKGREIREQSKQSLRSHLEPLVNIPP 125 S SG+VDR+VKAG + R R+ES+RR L +T+KG ++ + LEP++ I Sbjct: 63 KSTVSGIVDRLVKAGFLKRTRNESNRRALSLELTEKGATKAAETYHVFFNRLEPILEIGE 122 Query: 126 EDARELLRLHREIITILEQ 144 E +E+L +HREIITILE+ Sbjct: 123 ERLKEMLEMHREIITILER 141 >Q92B91.1 Q92B91_LISIN Lin1659 protein Length = 146 Score = 104 bits (260), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 53/139 (38%), Positives = 88/139 (63%) Query: 6 EQQLDDIFSSFRCIIHNFQQLMWKDAEKLNITSTQLMVLRKLEAHPDVGITELADLLHLG 65 E+ + ++ SFR + ++ ++A IT+TQL+ +R+L+ D+ + ELA+ + LG Sbjct: 3 EKLVKEVIFSFREVQRKTHHVLAEEAANREITTTQLLAIRELQKESDLTLGELAERMKLG 62 Query: 66 NSAASGVVDRMVKAGLITRQRSESDRRIFKLAMTDKGREIREQSKQSLRSHLEPLVNIPP 125 S SG+VDR+VKAG + R R+ES+RR L +T+KG ++ + LEP++ I Sbjct: 63 KSTVSGIVDRLVKAGFLKRTRNESNRRALSLELTEKGATKAAETYHVFFNRLEPILEIGE 122 Query: 126 EDARELLRLHREIITILEQ 144 E +E+L +H+EIITILE+ Sbjct: 123 ERLKEMLEMHQEIITILER 141 >A0AJ70.1 A0AJ70_LISW6 Complete genome Length = 146 Score = 103 bits (257), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 88/139 (63%) Query: 6 EQQLDDIFSSFRCIIHNFQQLMWKDAEKLNITSTQLMVLRKLEAHPDVGITELADLLHLG 65 E+ + ++ SFR + ++ ++A IT+TQL+ +R+L+ ++ + ELAD + LG Sbjct: 3 EKLVKEVIFSFREVQRKTHHVLAEEAANREITTTQLLAIRELQKESELTLGELADRMKLG 62 Query: 66 NSAASGVVDRMVKAGLITRQRSESDRRIFKLAMTDKGREIREQSKQSLRSHLEPLVNIPP 125 S SG+VDR+VKAG + R R+ES+RR L +T+KG ++ + LEP++ I Sbjct: 63 KSTVSGIVDRLVKAGFLKRTRNESNRRALSLELTEKGATKAAETYHVFFNRLEPILEIGE 122 Query: 126 EDARELLRLHREIITILEQ 144 + +E+L +H+EIITILE+ Sbjct: 123 DKLKEMLEVHQEIITILER 141 >Q71Z50.1 Q71Z50_LISMF Transcriptional regulator, MarR family Length = 146 Score = 103 bits (256), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 52/139 (37%), Positives = 88/139 (63%) Query: 6 EQQLDDIFSSFRCIIHNFQQLMWKDAEKLNITSTQLMVLRKLEAHPDVGITELADLLHLG 65 E+ + ++ SFR + ++ ++A IT+TQL+ +R+L+ ++ + ELA+ + LG Sbjct: 3 EKLVKEVIFSFREVQRKTHHVLAEEAANREITTTQLLAIRELQKESELTLGELAERMKLG 62 Query: 66 NSAASGVVDRMVKAGLITRQRSESDRRIFKLAMTDKGREIREQSKQSLRSHLEPLVNIPP 125 S SG+VDR+VKAG + R R+ES+RR L +T+KG ++ + LEP++ I Sbjct: 63 KSTVSGIVDRLVKAGFLKRTRNESNRRALSLELTEKGATKAAETYHVFFNRLEPILEIGE 122 Query: 126 EDARELLRLHREIITILEQ 144 E +E+L +H+EIITILE+ Sbjct: 123 ERLKEMLEMHQEIITILER 141 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.135 0.373 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 811,903,926 Number of extensions: 28313447 Number of successful extensions: 106758 Number of sequences better than 1.0e-05: 555 Number of HSP's gapped: 107157 Number of HSP's successfully gapped: 555 Length of query: 151 Length of database: 3,060,696,203 Length adjustment: 113 Effective length of query: 38 Effective length of database: 1,996,121,508 Effective search space: 75852617304 Effective search space used: 75852617304 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)