BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0032.p (155 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K597.1 B3K597_9BACI Alkyl hydroperoxide reductase/ Thiol speci... 231 2e-59 B1D8U8.1 B1D8U8_9BACL Peroxiredoxin EC=1.11.1.15 220 3e-56 C5D5V9.1 C5D5V9_9BACI Peroxiredoxin EC=1.11.1.15 208 1e-52 A7GL05.1 A7GL05_BACCN Alkyl hydroperoxide reductase/ Thiol speci... 207 3e-52 Q3EXW5.1 Q3EXW5_BACTI Thioredoxin peroxidase EC=1.11.1.15 205 9e-52 >B3K597.1 B3K597_9BACI Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Length = 160 Score = 231 bits (589), Expect = 2e-59, Method: Compositional matrix adjust. Identities = 100/153 (65%), Positives = 131/153 (85%) Query: 2 NKIEVGQEVPDFTLPASTGQNISLSDYRGRKVVLYFYPKNMTPACTQEACDFRDAGDPIA 61 ++++G +VPDF+LPAS G+ ++LSD+RGRKVVL+FYPKNMTP CT+EAC FRD + Sbjct: 8 KQLKIGSKVPDFSLPASNGEKVALSDFRGRKVVLFFYPKNMTPTCTEEACSFRDNYGALE 67 Query: 62 RGNAVVLGISPDSLSSHAKFIEKHSLPFPLLSDEDHTVSQLFGVWQLKKLYGKEFMGIVR 121 + AVV+GISPD L SHAKFI+KHSLP+ LLSDE+H VS++FGVWQ+KK++G+E+MGIVR Sbjct: 68 QAGAVVIGISPDPLKSHAKFIDKHSLPYLLLSDEEHKVSEMFGVWQMKKMFGREYMGIVR 127 Query: 122 STFLIDEQGILVKEWRKVRVKGHVEALLGEIMN 154 STFLIDE+G L EWRKV+VKGHVEA+L +++ Sbjct: 128 STFLIDEKGKLAGEWRKVKVKGHVEAVLAAVLS 160 >B1D8U8.1 B1D8U8_9BACL Peroxiredoxin EC=1.11.1.15 Length = 155 Score = 220 bits (561), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 99/151 (65%), Positives = 123/151 (81%) Query: 1 MNKIEVGQEVPDFTLPASTGQNISLSDYRGRKVVLYFYPKNMTPACTQEACDFRDAGDPI 60 M+ IEVG++ PDF LPAS G+ + LSDYRG+KVVLYFYPK+ TP CTQ+ACDFRDA + Sbjct: 1 MSTIEVGKKAPDFKLPASNGETVKLSDYRGKKVVLYFYPKDNTPTCTQQACDFRDAYPAM 60 Query: 61 ARGNAVVLGISPDSLSSHAKFIEKHSLPFPLLSDEDHTVSQLFGVWQLKKLYGKEFMGIV 120 GN VVLGISPD + SH KFI K SLPF LLSDE+H V + +GVWQ+KKLYG+E+MG+V Sbjct: 61 VDGNTVVLGISPDPVKSHEKFIGKQSLPFLLLSDENHKVCEKYGVWQMKKLYGREYMGVV 120 Query: 121 RSTFLIDEQGILVKEWRKVRVKGHVEALLGE 151 RSTFLI+E+G LV+EWR V++KGHV+ + E Sbjct: 121 RSTFLINEKGKLVREWRGVKIKGHVQQVADE 151 >C5D5V9.1 C5D5V9_9BACI Peroxiredoxin EC=1.11.1.15 Length = 156 Score = 208 bits (529), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 94/150 (62%), Positives = 118/150 (78%) Query: 4 IEVGQEVPDFTLPASTGQNISLSDYRGRKVVLYFYPKNMTPACTQEACDFRDAGDPIARG 63 +++GQ PDFTLPAS G+ +SLSD+RG+ VVLYFYPK+MTP CT EACDFRD + Sbjct: 3 LQIGQLAPDFTLPASNGEIVSLSDFRGKHVVLYFYPKDMTPGCTTEACDFRDHYEKFTET 62 Query: 64 NAVVLGISPDSLSSHAKFIEKHSLPFPLLSDEDHTVSQLFGVWQLKKLYGKEFMGIVRST 123 N V+LG+S DS+ H KFIEK+ LPF LLSDE+H V++++GVW+LKK +GKE+MGI RST Sbjct: 63 NTVILGVSTDSVERHKKFIEKYQLPFLLLSDEEHKVAEMYGVWKLKKNFGKEYMGIERST 122 Query: 124 FLIDEQGILVKEWRKVRVKGHVEALLGEIM 153 F+ID G LVKEWR V+VKGHVE L I+ Sbjct: 123 FVIDRDGRLVKEWRGVKVKGHVEEALEYIL 152 >A7GL05.1 A7GL05_BACCN Alkyl hydroperoxide reductase/ Thiol specific antioxidant/ Mal allergen Length = 154 Score = 207 bits (527), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 96/149 (64%), Positives = 115/149 (77%) Query: 4 IEVGQEVPDFTLPASTGQNISLSDYRGRKVVLYFYPKNMTPACTQEACDFRDAGDPIARG 63 I VG+ PDFTL AS G+ I LSD+RG+ VVLYFYPK+MTP CT EACDFRDA Sbjct: 2 ITVGEMAPDFTLEASNGEQIKLSDFRGKHVVLYFYPKDMTPGCTTEACDFRDAYGVFQEN 61 Query: 64 NAVVLGISPDSLSSHAKFIEKHSLPFPLLSDEDHTVSQLFGVWQLKKLYGKEFMGIVRST 123 + V+LG+SPD + H KFIEKH LPF LL DEDH V++ +GVW+LKK +GKE+MGI RST Sbjct: 62 DTVILGVSPDPANRHVKFIEKHELPFLLLVDEDHKVAEQYGVWKLKKNFGKEYMGIERST 121 Query: 124 FLIDEQGILVKEWRKVRVKGHVEALLGEI 152 FLI++ G LV+EWRKVRVKGHVE +L I Sbjct: 122 FLINKNGELVQEWRKVRVKGHVEEVLESI 150 >Q3EXW5.1 Q3EXW5_BACTI Thioredoxin peroxidase EC=1.11.1.15 Length = 154 Score = 205 bits (522), Expect = 9e-52, Method: Compositional matrix adjust. Identities = 94/149 (63%), Positives = 116/149 (77%) Query: 4 IEVGQEVPDFTLPASTGQNISLSDYRGRKVVLYFYPKNMTPACTQEACDFRDAGDPIARG 63 I VG+ P+FTL S G+ +SL+D+RG+ VVLYFYPK+MTP CT EACDFRDA Sbjct: 5 ITVGEMAPEFTLEGSNGEEVSLADFRGKNVVLYFYPKDMTPGCTTEACDFRDAYGVFQEK 64 Query: 64 NAVVLGISPDSLSSHAKFIEKHSLPFPLLSDEDHTVSQLFGVWQLKKLYGKEFMGIVRST 123 + V+LG+SPDS + H KFIEKH LPF LL DEDH V++L+ VW+LKK +GKE+MGI RST Sbjct: 65 DTVILGVSPDSANRHLKFIEKHELPFTLLVDEDHKVAELYDVWKLKKNFGKEYMGIERST 124 Query: 124 FLIDEQGILVKEWRKVRVKGHVEALLGEI 152 FLI++ G LVKEWRKV+VKGHVE +L I Sbjct: 125 FLINKDGELVKEWRKVKVKGHVEDVLSYI 153 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.320 0.138 0.411 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 974,446,797 Number of extensions: 38759617 Number of successful extensions: 84263 Number of sequences better than 1.0e-05: 2965 Number of HSP's gapped: 84168 Number of HSP's successfully gapped: 2965 Length of query: 155 Length of database: 3,060,696,203 Length adjustment: 116 Effective length of query: 39 Effective length of database: 1,967,858,463 Effective search space: 76746480057 Effective search space used: 76746480057 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 126 (53.1 bits)