BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0030.p (438 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K595.1 B3K595_9BACI Glutamate-1-semialdehyde-2,1-aminomutase 712 0.0 B1D8U3.1 B1D8U3_9BACL Glutamate-1-semialdehyde-2,1-aminomutase 659 0.0 Q65M82.1 GSA1_BACLD Glutamate-1-semialdehyde 2,1-aminomutase 1 E... 591 e-167 C2Y5P0.1 C2Y5P0_BACCE Glutamate-1-semialdehyde 2,1-aminomutase 1 587 e-165 B7H9S6.1 B7H9S6_BACC4 Glutamate-1-semialdehyde-2,1-aminomutase E... 586 e-165 >B3K595.1 B3K595_9BACI Glutamate-1-semialdehyde-2,1-aminomutase Length = 438 Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust. Identities = 348/410 (84%), Positives = 371/410 (90%) Query: 2 NRTTSEHLYEEALQHIVGGVNSPSRSFKAVGGGAPVFMKRAGGSRFWDEDGNEYIDYLAA 61 +R SE LY+EALQHIVGGVNSPSRSFKAVGGGAPVFMKRA G+ FWDEDGN YIDYLAA Sbjct: 4 SRNRSEALYQEALQHIVGGVNSPSRSFKAVGGGAPVFMKRASGAHFWDEDGNRYIDYLAA 63 Query: 62 YGPIITGHAHPHITAAITQAAENGLLYGTPTQLEIKLAKMLKEAIPSMDKVRFVNSGTEA 121 YGPIITGHAHPHITAAIT AA+NG LYGTPT+LEI LAKMLKEAIPSMDKVRFVNSGTEA Sbjct: 64 YGPIITGHAHPHITAAITAAAQNGTLYGTPTELEITLAKMLKEAIPSMDKVRFVNSGTEA 123 Query: 122 VMTTIRVARAYTKRSKIVKFAGCYHGHSDLVLVAAGSGPSTLGIPDSAGVPASIAQEVIT 181 VMTTIRVARAYTKR+KI+KFAGCYHGHSDLVLVAAGSGPSTLGIPDSAG+PASIA EVIT Sbjct: 124 VMTTIRVARAYTKRNKIIKFAGCYHGHSDLVLVAAGSGPSTLGIPDSAGIPASIATEVIT 183 Query: 182 VPFNDLDALREALDKWGADVAAVMVEPIVGNFGMVMPQPGFLEGLCKQAHDNGSLVIYDE 241 VPFNDL+ LR ALD WG DVAAVMVEPIVGNFGMVMP+PGFLEGLC+ AHDNGSLVIYDE Sbjct: 184 VPFNDLEGLRAALDAWGEDVAAVMVEPIVGNFGMVMPKPGFLEGLCQMAHDNGSLVIYDE 243 Query: 242 VITAFRFHYGSTQTYAGLDHHEDIIPDLTAXXXXXXXXXXXXXXXXRKHVMEQVAPLGPA 301 VI+AFRFHYGSTQTYAGL +HE I PDLTA RKHVMEQVAPLGPA Sbjct: 244 VISAFRFHYGSTQTYAGLANHEAIQPDLTALGKIIGGGLPIGAYGGRKHVMEQVAPLGPA 303 Query: 302 YQAGTMAGNPASISAGIACLEVLAAEGVYDEMERLAIRLTEGLQASADRHGIPLTINRIR 361 YQAGTMAGNPASI+AGIACLEVL EGVY+EMERL I+LTEGLQASADRHG+PLTINRIR Sbjct: 304 YQAGTMAGNPASIAAGIACLEVLQGEGVYEEMERLTIKLTEGLQASADRHGVPLTINRIR 363 Query: 362 GAFSTHFCNHPVTNYDEAQDTDGGLFASFFRHMLNRGINLAPSKYEAWFL 411 G+FSTHFC+HPVTNYDEAQDTDG FA+FFRHML+RG+NLAPSKYEAWF+ Sbjct: 364 GSFSTHFCDHPVTNYDEAQDTDGEAFAAFFRHMLDRGVNLAPSKYEAWFM 413 >B1D8U3.1 B1D8U3_9BACL Glutamate-1-semialdehyde-2,1-aminomutase Length = 436 Score = 659 bits (1700), Expect = 0.0, Method: Compositional matrix adjust. Identities = 314/411 (76%), Positives = 351/411 (85%) Query: 1 MNRTTSEHLYEEALQHIVGGVNSPSRSFKAVGGGAPVFMKRAGGSRFWDEDGNEYIDYLA 60 M R SE LYEEALQHIVGGVNSPSRS+KAVGGGAPVFMKRA G+ F+D D N YIDYLA Sbjct: 3 MQRKRSEALYEEALQHIVGGVNSPSRSYKAVGGGAPVFMKRAEGAYFYDVDDNRYIDYLA 62 Query: 61 AYGPIITGHAHPHITAAITQAAENGLLYGTPTQLEIKLAKMLKEAIPSMDKVRFVNSGTE 120 AYGPIITGHAHPHIT AI +AA+NG+LYGTPT+LEI++A+MLKEAIPS+DKVRFVNSGTE Sbjct: 63 AYGPIITGHAHPHITEAIVRAAQNGILYGTPTELEIQMARMLKEAIPSLDKVRFVNSGTE 122 Query: 121 AVMTTIRVARAYTKRSKIVKFAGCYHGHSDLVLVAAGSGPSTLGIPDSAGVPASIAQEVI 180 AVMTTIRVARA+TKR+KI+KFAGCYHGHSDLVLVAAGSGPSTLGIPDSAG+P SIAQEVI Sbjct: 123 AVMTTIRVARAFTKRNKIIKFAGCYHGHSDLVLVAAGSGPSTLGIPDSAGIPTSIAQEVI 182 Query: 181 TVPFNDLDALREALDKWGADVAAVMVEPIVGNFGMVMPQPGFLEGLCKQAHDNGSLVIYD 240 TVPFNDLDAL+EAL++WG D AAVMVEPIVGNFGMVMP+PGFLEGLCK + G+LVIYD Sbjct: 183 TVPFNDLDALKEALERWGDDTAAVMVEPIVGNFGMVMPKPGFLEGLCKMTREAGALVIYD 242 Query: 241 EVITAFRFHYGSTQTYAGLDHHEDIIPDLTAXXXXXXXXXXXXXXXXRKHVMEQVAPLGP 300 EVITAFRFHYG+TQT+ + I PDLT+ RK +MEQVAPLGP Sbjct: 243 EVITAFRFHYGTTQTFNVFPDFKAIEPDLTSLGKIIGGGLPIGAYGGRKEIMEQVAPLGP 302 Query: 301 AYQAGTMAGNPASISAGIACLEVLAAEGVYDEMERLAIRLTEGLQASADRHGIPLTINRI 360 AYQAGTMAGNPASISAGIACLEVL G+YD M LA L +GL+ SA +HGIPLT+N+I Sbjct: 303 AYQAGTMAGNPASISAGIACLEVLQEAGIYDRMNDLATTLADGLRVSAAKHGIPLTVNQI 362 Query: 361 RGAFSTHFCNHPVTNYDEAQDTDGGLFASFFRHMLNRGINLAPSKYEAWFL 411 RG+FS HFCNHPVTNYDEAQDTDG +F FF+ ML +GINLAPSKYEAWF+ Sbjct: 363 RGSFSAHFCNHPVTNYDEAQDTDGEIFGRFFKLMLEQGINLAPSKYEAWFM 413 >Q65M82.1 GSA1_BACLD Glutamate-1-semialdehyde 2,1-aminomutase 1 EC=5.4.3.8 Length = 432 Score = 591 bits (1523), Expect = e-167, Method: Compositional matrix adjust. Identities = 284/411 (69%), Positives = 332/411 (80%), Gaps = 6/411 (1%) Query: 1 MNRTTSEHLYEEALQHIVGGVNSPSRSFKAVGGGAPVFMKRAGGSRFWDEDGNEYIDYLA 60 M T SE L+EEALQHIVGGVNSPSRS+KAVGGG+PV M+R G+ FWD DGN+YIDYLA Sbjct: 1 MQHTQSEKLHEEALQHIVGGVNSPSRSYKAVGGGSPVAMERGSGAYFWDVDGNKYIDYLA 60 Query: 61 AYGPIITGHAHPHITAAITQAAENGLLYGTPTQLEIKLAKMLKEAIPSMDKVRFVNSGTE 120 AYGPIITGHAHPHIT AI AAENG+LYGTPT+ E+ AKMLKEAIP++DKVRFVNSGTE Sbjct: 61 AYGPIITGHAHPHITKAIQTAAENGVLYGTPTKHEVTFAKMLKEAIPALDKVRFVNSGTE 120 Query: 121 AVMTTIRVARAYTKRSKIVKFAGCYHGHSDLVLVAAGSGPSTLGIPDSAGVPASIAQEVI 180 AVMTTIRVARAYT R+KI+KFAGCYHGHSDLVLVAAGSGPSTLG PDSAGVP SIA EVI Sbjct: 121 AVMTTIRVARAYTGRTKIIKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPKSIANEVI 180 Query: 181 TVPFNDLDALREALDKWGADVAAVMVEPIVGNFGMVMPQPGFLEGLCKQAHDNGSLVIYD 240 TVPFND+D+ +EALDKWG D+AAV+VEPIVGNFG+V P+ GFLE + + H+ G+LVIYD Sbjct: 181 TVPFNDIDSYKEALDKWGNDIAAVLVEPIVGNFGIVEPKSGFLEQVNELTHNAGALVIYD 240 Query: 241 EVITAFRFHYGSTQTYAGLDHHEDIIPDLTAXXXXXXXXXXXXXXXXRKHVMEQVAPLGP 300 EVITAFRF YG Q G+ PDLTA RK +MEQVAPLGP Sbjct: 241 EVITAFRFMYGGAQDLLGVK------PDLTALGKIIGGGLPIGAYGGRKEIMEQVAPLGP 294 Query: 301 AYQAGTMAGNPASISAGIACLEVLAAEGVYDEMERLAIRLTEGLQASADRHGIPLTINRI 360 AYQAGTMAGNPASI +GIACLEVL +G Y++++RL L EG+ A A+ HGI +T+NR+ Sbjct: 295 AYQAGTMAGNPASILSGIACLEVLKEKGTYEKLDRLGAMLEEGILAHAETHGIDITVNRL 354 Query: 361 RGAFSTHFCNHPVTNYDEAQDTDGGLFASFFRHMLNRGINLAPSKYEAWFL 411 +GA + +F N V NY++A++TDG +FA+FF+ ML RGINLAPSKYEAWF+ Sbjct: 355 KGALTVYFTNEKVENYEQAENTDGDMFAAFFKLMLERGINLAPSKYEAWFI 405 >C2Y5P0.1 C2Y5P0_BACCE Glutamate-1-semialdehyde 2,1-aminomutase 1 Length = 432 Score = 587 bits (1512), Expect = e-165, Method: Compositional matrix adjust. Identities = 280/411 (68%), Positives = 332/411 (80%), Gaps = 6/411 (1%) Query: 1 MNRTTSEHLYEEALQHIVGGVNSPSRSFKAVGGGAPVFMKRAGGSRFWDEDGNEYIDYLA 60 MN T SE L++EAL+HIVGGVNSPSRSFKAVGGGAPV M+R G+ FWD DGN+YIDYLA Sbjct: 1 MNFTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPVAMERGKGAYFWDVDGNKYIDYLA 60 Query: 61 AYGPIITGHAHPHITAAITQAAENGLLYGTPTQLEIKLAKMLKEAIPSMDKVRFVNSGTE 120 AYGPIITGHAHPHIT AIT AAENG+LYGTPT LE+K AKMLKEA+P++DKVRFVNSGTE Sbjct: 61 AYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEAVPALDKVRFVNSGTE 120 Query: 121 AVMTTIRVARAYTKRSKIVKFAGCYHGHSDLVLVAAGSGPSTLGIPDSAGVPASIAQEVI 180 AVMTTIRVARAYT R+KI+KFAGCYHGHSDLVLVAAGSGPSTLG PDSAGVP SIAQEVI Sbjct: 121 AVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVI 180 Query: 181 TVPFNDLDALREALDKWGADVAAVMVEPIVGNFGMVMPQPGFLEGLCKQAHDNGSLVIYD 240 TVPFN+++ L+EALDKWG +VAA++VEPIVGNFG+V P+PGFLE + + H+ G+LVIYD Sbjct: 181 TVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD 240 Query: 241 EVITAFRFHYGSTQTYAGLDHHEDIIPDLTAXXXXXXXXXXXXXXXXRKHVMEQVAPLGP 300 EVITAFRF YG Q G + PDLTA +K +MEQVAPLGP Sbjct: 241 EVITAFRFMYGGAQDLLG------VTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGP 294 Query: 301 AYQAGTMAGNPASISAGIACLEVLAAEGVYDEMERLAIRLTEGLQASADRHGIPLTINRI 360 AYQAGTMAGNPAS+++GIACLEVL EG+Y++++ L L +G+ A +H I +T+NR+ Sbjct: 295 AYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGAMLEKGILEQAAKHNIDITLNRL 354 Query: 361 RGAFSTHFCNHPVTNYDEAQDTDGGLFASFFRHMLNRGINLAPSKYEAWFL 411 +GA + +F + + +YD AQDTDG +F FF+ ML G+NLAPSKYEAWFL Sbjct: 355 KGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFL 405 >B7H9S6.1 B7H9S6_BACC4 Glutamate-1-semialdehyde-2,1-aminomutase EC=5.4.3.8 Length = 432 Score = 586 bits (1510), Expect = e-165, Method: Compositional matrix adjust. Identities = 280/411 (68%), Positives = 332/411 (80%), Gaps = 6/411 (1%) Query: 1 MNRTTSEHLYEEALQHIVGGVNSPSRSFKAVGGGAPVFMKRAGGSRFWDEDGNEYIDYLA 60 MN T SE L++EAL+HIVGGVNSPSRSFKAVGGGAPV M+R G+ FWD DGN+YIDYLA Sbjct: 1 MNFTKSEALHKEALEHIVGGVNSPSRSFKAVGGGAPVAMERGKGAYFWDVDGNKYIDYLA 60 Query: 61 AYGPIITGHAHPHITAAITQAAENGLLYGTPTQLEIKLAKMLKEAIPSMDKVRFVNSGTE 120 AYGPIITGHAHPHIT AIT AAENG+LYGTPT LE+K AKMLKEA+P++DKVRFVNSGTE Sbjct: 61 AYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFAKMLKEAMPALDKVRFVNSGTE 120 Query: 121 AVMTTIRVARAYTKRSKIVKFAGCYHGHSDLVLVAAGSGPSTLGIPDSAGVPASIAQEVI 180 AVMTTIRVARAYT R+KI+KFAGCYHGHSDLVLVAAGSGPSTLG PDSAGVP SIAQEVI Sbjct: 121 AVMTTIRVARAYTGRTKIMKFAGCYHGHSDLVLVAAGSGPSTLGTPDSAGVPQSIAQEVI 180 Query: 181 TVPFNDLDALREALDKWGADVAAVMVEPIVGNFGMVMPQPGFLEGLCKQAHDNGSLVIYD 240 TVPFN+++ L+EALDKWG +VAA++VEPIVGNFG+V P+PGFLE + + H+ G+LVIYD Sbjct: 181 TVPFNNVETLKEALDKWGHEVAAILVEPIVGNFGIVEPKPGFLEKVNELVHEAGALVIYD 240 Query: 241 EVITAFRFHYGSTQTYAGLDHHEDIIPDLTAXXXXXXXXXXXXXXXXRKHVMEQVAPLGP 300 EVITAFRF YG Q G + PDLTA +K +MEQVAPLGP Sbjct: 241 EVITAFRFMYGGAQDLLG------VTPDLTALGKVIGGGLPIGAYGGKKEIMEQVAPLGP 294 Query: 301 AYQAGTMAGNPASISAGIACLEVLAAEGVYDEMERLAIRLTEGLQASADRHGIPLTINRI 360 AYQAGTMAGNPAS+++GIACLEVL EG+Y++++ L L +G+ A +H I +T+NR+ Sbjct: 295 AYQAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGAMLEKGILEQAAKHNIDITLNRL 354 Query: 361 RGAFSTHFCNHPVTNYDEAQDTDGGLFASFFRHMLNRGINLAPSKYEAWFL 411 +GA + +F + + +YD AQDTDG +F FF+ ML G+NLAPSKYEAWFL Sbjct: 355 KGALTVYFTTNTIEDYDAAQDTDGEMFGKFFKLMLQEGVNLAPSKYEAWFL 405 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,439,427,432 Number of extensions: 100316901 Number of successful extensions: 282192 Number of sequences better than 1.0e-05: 6937 Number of HSP's gapped: 268155 Number of HSP's successfully gapped: 6962 Length of query: 438 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 299 Effective length of database: 1,751,175,118 Effective search space: 523601360282 Effective search space used: 523601360282 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 133 (55.8 bits)