BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0028.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C1PF87.1 C1PF87_BACCO Peptide deformylase EC=3.5.1.88 261 4e-68 A5N0L9.1 A5N0L9_CLOK5 Peptide deformylase 258 2e-67 A3I5Q3.1 A3I5Q3_9BACI Peptide deformylase 249 1e-64 B9E4H8.1 B9E4H8_CLOK1 Peptide deformylase 247 4e-64 B1HRJ8.1 B1HRJ8_LYSSC Peptide deformylase 244 2e-63 >C1PF87.1 C1PF87_BACCO Peptide deformylase EC=3.5.1.88 Length = 193 Score = 261 bits (666), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 122/195 (62%), Positives = 152/195 (77%), Gaps = 5/195 (2%) Query: 6 AKFKAEYTITMDDIVREGASVLRTVAEPVPIPLQAEDQEALQCMMQFLKNSQDPEVAAKY 65 +K+ +Y ITMDDIVREG +LR V + V +P ED+ L+CM+QFLKNSQDPE+A K Sbjct: 2 SKYNDDYMITMDDIVREGDPILRKVLDEVNMPPTEEDKAELRCMLQFLKNSQDPEIAGKC 61 Query: 66 KLRSGVGLSANQIGLQKRMFVMYLRDEKGNMVEHAWV--NPKVISHSVAMIYLPESEGCL 123 LR+GVGLSANQIGL KRMF +Y+ DE G E A+ NPK++SHS++MIYLP+ EGCL Sbjct: 62 NLRAGVGLSANQIGLNKRMFAVYIADEDG---EKAYTVFNPKLVSHSISMIYLPQGEGCL 118 Query: 124 SVDRPVHGFVPRYESVKVKGYNMTGKEVVMKFKGYQAIVVQHEIDHLDGIMFYDRINEEN 183 SVDR V GFVPRYE +KVK Y++ G EV++K KGY AIV QHE+DHL+GIMFYD IN++N Sbjct: 119 SVDRKVDGFVPRYERIKVKAYDLDGNEVLIKLKGYPAIVFQHEMDHLNGIMFYDHINKDN 178 Query: 184 PFKLPQGVEIRSLYE 198 PF LP +IRS+YE Sbjct: 179 PFALPANTDIRSVYE 193 >A5N0L9.1 A5N0L9_CLOK5 Peptide deformylase Length = 191 Score = 258 bits (659), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 121/191 (63%), Positives = 147/191 (76%), Gaps = 2/191 (1%) Query: 7 KFKAEYTITMDDIVREGASVLRTVAEPVPIPLQAEDQEALQCMMQFLKNSQDPEVAAKYK 66 KF + Y ITM DIVREG +L V +P ED+E L MM FLKNSQD ++ KYK Sbjct: 3 KFHSNYIITMKDIVREGNDILHRPTLEVMVPPSEEDKETLTSMMNFLKNSQDSILSKKYK 62 Query: 67 LRSGVGLSANQIGLQKRMFVMYLRDEKGNMVEHAWVNPKVISHSVAMIYLPESEGCLSVD 126 LR GVGLSANQIGL KRMFV+Y DEKG E+ +NPK+ISHSV+MIYLP SEGCLSVD Sbjct: 63 LRGGVGLSANQIGLNKRMFVVYFTDEKGKEHEYTLINPKIISHSVSMIYLPPSEGCLSVD 122 Query: 127 RPVHGFVPRYESVKVKGYNMTGKEVVMKFKGYQAIVVQHEIDHLDGIMFYDRINEENPFK 186 R + GFVPRYE +KVKG+N+ G+E+++K GY +IV+QHEIDHL+GIMFY+RIN+ENPFK Sbjct: 123 RVIDGFVPRYERIKVKGFNLEGEEIILKLNGYSSIVIQHEIDHLNGIMFYERINKENPFK 182 Query: 187 LPQGVEIRSLY 197 LP+ +SLY Sbjct: 183 LPENC--KSLY 191 >A3I5Q3.1 A3I5Q3_9BACI Peptide deformylase Length = 192 Score = 249 bits (635), Expect = 1e-64, Method: Compositional matrix adjust. Identities = 119/194 (61%), Positives = 149/194 (76%), Gaps = 5/194 (2%) Query: 6 AKFKAEYTITMDDIVREGASVLRTVAEPVPIPLQAEDQEALQCMMQFLKNSQDPEVAAKY 65 AKF +Y ITM D V+E +++LR + V IP+ ED+ L M+Q+LKNSQDP + KY Sbjct: 2 AKFHPDYMITMKDFVKEHSNLLRKQTQDVAIPVPLEDRHILLSMLQYLKNSQDPILIKKY 61 Query: 66 KLRSGVGLSANQIGLQKRMFVMYL--RDEKGNMVEHAWVNPKVISHSVAMIYLPESEGCL 123 KLRSG GLSANQIG+ KRMF + D+K M+ ++NPKV+SHS MIYLPE EGCL Sbjct: 62 KLRSGSGLSANQIGVDKRMFAVLFENHDQKHEMM---FINPKVMSHSFNMIYLPEGEGCL 118 Query: 124 SVDRPVHGFVPRYESVKVKGYNMTGKEVVMKFKGYQAIVVQHEIDHLDGIMFYDRINEEN 183 SV+RPVHGFVPRYE +KVK YN+ G+E +M KGY++IVVQHEIDHL+GIMFYDRIN++N Sbjct: 119 SVNRPVHGFVPRYERIKVKAYNIDGQEFIMSLKGYESIVVQHEIDHLNGIMFYDRINKDN 178 Query: 184 PFKLPQGVEIRSLY 197 PF+LP+ V I SLY Sbjct: 179 PFQLPKNVIIESLY 192 >B9E4H8.1 B9E4H8_CLOK1 Peptide deformylase Length = 180 Score = 247 bits (630), Expect = 4e-64, Method: Compositional matrix adjust. Identities = 116/182 (63%), Positives = 141/182 (77%), Gaps = 2/182 (1%) Query: 16 MDDIVREGASVLRTVAEPVPIPLQAEDQEALQCMMQFLKNSQDPEVAAKYKLRSGVGLSA 75 M DIVREG +L V +P ED+E L MM FLKNSQD ++ KYKLR GVGLSA Sbjct: 1 MKDIVREGNDILHRPTLEVMVPPSEEDKETLTSMMNFLKNSQDSILSKKYKLRGGVGLSA 60 Query: 76 NQIGLQKRMFVMYLRDEKGNMVEHAWVNPKVISHSVAMIYLPESEGCLSVDRPVHGFVPR 135 NQIGL KRMFV+Y DEKG E+ +NPK+ISHSV+MIYLP SEGCLSVDR + GFVPR Sbjct: 61 NQIGLNKRMFVVYFTDEKGKEHEYTLINPKIISHSVSMIYLPPSEGCLSVDRVIDGFVPR 120 Query: 136 YESVKVKGYNMTGKEVVMKFKGYQAIVVQHEIDHLDGIMFYDRINEENPFKLPQGVEIRS 195 YE +KVKG+N+ G+E+++K GY +IV+QHEIDHL+GIMFY+RIN+ENPFKLP+ +S Sbjct: 121 YERIKVKGFNLEGEEIILKLNGYSSIVIQHEIDHLNGIMFYERINKENPFKLPENC--KS 178 Query: 196 LY 197 LY Sbjct: 179 LY 180 >B1HRJ8.1 B1HRJ8_LYSSC Peptide deformylase Length = 192 Score = 244 bits (624), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 116/192 (60%), Positives = 144/192 (75%), Gaps = 1/192 (0%) Query: 6 AKFKAEYTITMDDIVREGASVLRTVAEPVPIPLQAEDQEALQCMMQFLKNSQDPEVAAKY 65 AKF +Y ITM D V+E + +LR + V IP+ ED+ L M+Q+LKNSQDP + KY Sbjct: 2 AKFHPDYMITMKDFVKEHSVLLRKQTQDVAIPVPLEDRHILFSMLQYLKNSQDPILTKKY 61 Query: 66 KLRSGVGLSANQIGLQKRMFVMYLRDEKGNMVEHAWVNPKVISHSVAMIYLPESEGCLSV 125 KLR G GLSANQIG+ KRMF + D E ++NPKV+SHS+ MIYLPE EGCLSV Sbjct: 62 KLRPGSGLSANQIGVDKRMFAVLFEDHDQK-PEMMFINPKVMSHSLNMIYLPEGEGCLSV 120 Query: 126 DRPVHGFVPRYESVKVKGYNMTGKEVVMKFKGYQAIVVQHEIDHLDGIMFYDRINEENPF 185 +RPVHGFVPRYE +KVK Y + G+E ++ KGY++IVVQHEIDHL+GIMFYDRIN++NPF Sbjct: 121 NRPVHGFVPRYERIKVKAYTIDGQEFILSLKGYESIVVQHEIDHLNGIMFYDRINKDNPF 180 Query: 186 KLPQGVEIRSLY 197 +LPQ V I SLY Sbjct: 181 QLPQNVIIESLY 192 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.135 0.387 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,128,838,365 Number of extensions: 43249002 Number of successful extensions: 103106 Number of sequences better than 1.0e-05: 2114 Number of HSP's gapped: 101990 Number of HSP's successfully gapped: 2114 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 128 (53.9 bits)