BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0027.p (444 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K587.1 B3K587_9BACI Copper amine oxidase domain protein 394 e-108 B1D5R2.1 B1D5R2_9BACL Copper amine oxidase domain protein 236 4e-60 Q67M54.1 Q67M54_SYMTH Conserved domain protein 72 1e-10 A3DKA4.1 A3DKA4_CLOTH Copper amine oxidase-like protein 70 4e-10 B4B9G3.1 B4B9G3_CLOTM Copper amine oxidase domain protein 70 4e-10 >B3K587.1 B3K587_9BACI Copper amine oxidase domain protein Length = 420 Score = 394 bits (1013), Expect = e-108, Method: Compositional matrix adjust. Identities = 210/435 (48%), Positives = 270/435 (62%), Gaps = 18/435 (4%) Query: 11 MLNAWKKMYAAGTSSLLLFTLWIXXXXXXXXXXXXXXXXXXXXXXXFRIVALGDSITAGY 70 M WKK AA T SL L + +RIV LGDS+T GY Sbjct: 1 MFKQWKKGLAAVTGSLTLAVALVGPGVAPAYADEAAAKNT------YRIVTLGDSLTVGY 54 Query: 71 EPGMTDPNVKPYGYAERLLEQGWYHGRSALSNYGILGLTTAGLLNYXXXXXXXXXXXXXX 130 EPGM D N KPYG+ +RL EQG +HGR+ ++N GI GL T GL NY Sbjct: 55 EPGM-DLNSKPYGFVDRLYEQGLFHGRTEVTNLGIGGLKTDGLNNYVKAVLDERAITPEE 113 Query: 131 XQAGLP--DPRINQFAALTPQIKTELSEADLITLTIGGNDVSSLLVTAKDLTEEAFKAQL 188 Q GL DPR Q A + K ++EADLIT+TIGGND+ SL+ T + L++E +A++ Sbjct: 114 LQPGLSSIDPRTKQIGADAAKAKPMIAEADLITITIGGNDMMSLVSTVETLSDEQLQAKM 173 Query: 189 DQLLASYSSNVKAALENIRAVNAKATILLADQYQPAPKIAVSSSYLKLMSAAQQFTATAE 248 +L Y NV + + + ++N A I++ADQY P PKIA +Y KL++A+ +FT + Sbjct: 174 QELFQIYKDNVSSVITGLHSLNPDAAIVVADQYNPVPKIADDVAYAKLLAASGEFTKLVD 233 Query: 249 SVAASLNQPDAPVKVAHVAESFAGVEASRTHIISAGAADFHPTQLGYETIAKVFAETYWG 308 VA +KVAHVA+ F G E + THI+ D HP Q GYET+A VFAET WG Sbjct: 234 GVAGGFASQGVDIKVAHVAKKFVGSELTMTHILKD---DIHPNQYGYETMASVFAETIWG 290 Query: 309 EYRVPXXXXXXXXXXXXXPMSIVVKGVELDTPKKPILKNGQNFLALKDILNAVGATGKWD 368 Y+ P PM IVVKG EL+TP KPIL++ N++A++DI+NAVGAT KW+ Sbjct: 291 SYQKPPVQNEGQ------PMRIVVKGQELNTPYKPILRDNLNYVAIQDIVNAVGATTKWE 344 Query: 369 NKTQSATIVYGGKTVVITIGSQTIKVNGAAAAIDTPAFLQKVGNEDKTYLPLAALATGLG 428 NKT SATI +G +TVV+ IG++T++VNG A IDTPAFL KVG EDKTY+PLA +A+GLG Sbjct: 345 NKTSSATITFGDQTVVVKIGAKTVQVNGTAVPIDTPAFLHKVGKEDKTYVPLAVIASGLG 404 Query: 429 FDVNYSSKLRTAFIN 443 FDV YSSKLRTAFIN Sbjct: 405 FDVQYSSKLRTAFIN 419 >B1D5R2.1 B1D5R2_9BACL Copper amine oxidase domain protein Length = 431 Score = 236 bits (602), Expect = 4e-60, Method: Compositional matrix adjust. Identities = 151/402 (37%), Positives = 212/402 (52%), Gaps = 26/402 (6%) Query: 57 FRIVALGDSITAGYEPGMTDPNVKPYGYAERLLEQGWYHG-RSALSNYGILGLTTAGLLN 115 +RIVALGDS+TAGYE G T+ +V PYGY E++ EQ + G R+ NYGILGL GL Sbjct: 40 YRIVALGDSLTAGYEHGYTEKSV-PYGYVEQVYEQSLFQGLRAEYVNYGILGLKAEGLNR 98 Query: 116 YXXXXXXXXXXXXXXXQAGLPDPRINQFAALTPQIKTELSEADLITLTIGGNDVSSLLVT 175 Q L DPR AA T Q+ + A LI LTIGGND+ ++ T Sbjct: 99 LLQAVSGGRTVKADDIQKELQDPRKETLAAQTAQMAKSIRSASLIVLTIGGNDLLPVM-T 157 Query: 176 AKDL--TEEAFKAQLDQLLASYSSNVKAALENIRAVNAKATILLADQYQPAPK-IAVSSS 232 D T E + +L Y +++A++ I A+N KA ++++DQY P P + S+ Sbjct: 158 KLDTGATAEEITTYIQTILDQYEKDLEASIRTIAALNPKAQMVMSDQYLPVPAPLQFGST 217 Query: 233 YLKLMSAAQQ---------FTATAESVAASLNQPDAPVKVAHVAESFAGVEASRTHIISA 283 ++L A++ + V+ L ++VA V+ F G E T I Sbjct: 218 TIELYPEAKRKLLLDGVTKLRGKLDLVSTRLAGDGIKLQVADVSSLFVGHELEYTSI--- 274 Query: 284 GAADFHPTQLGYETIAKVFAETYWGEYRVPXXXXXXXXXXXXXPMSIVVKGVELD-TPKK 342 D HP GY + + FA WG+YR MS+VV G EL + Sbjct: 275 AQGDIHPNHQGYAAMGRAFATAIWGDYRT------VRPRQANVQMSVVVAGKELPASAAP 328 Query: 343 PILKNGQNFLALKDILNAVGATGKWDNKTQSATIVYGGKTVVITIGSQTIKVNGAAAAID 402 P+L++ ++F+A++DI +A+GA W+N +QSA + Y TV++TIGS ++G + Sbjct: 329 PVLRSNRSFVAMRDITDALGAKLSWNNASQSAAVSYNNHTVILTIGSAYATIDGKKVKLT 388 Query: 403 T-PAFLQKVGNEDKTYLPLAALATGLGFDVNYSSKLRTAFIN 443 T PAFL K G E KTYLPLAAL+ LG V Y S L+TAFIN Sbjct: 389 TPPAFLLKSGKESKTYLPLAALSEALGLQVTYRSTLQTAFIN 430 >Q67M54.1 Q67M54_SYMTH Conserved domain protein Length = 382 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 35/116 (30%), Positives = 64/116 (55%), Gaps = 4/116 (3%) Query: 328 MSIVVKGVELDTPKKPILKNGQNFLALKDILNAVGATGKWDNKTQSATIVYGGKTVVITI 387 + +VV GVE+ T P+L+N + + ++ + A+G +WD +T++AT+ G T+ +T+ Sbjct: 26 VRLVVDGVEVQTDVAPVLENDRTLVPIRAVTEALGFEVEWDQETRTATLTKGETTIQLTV 85 Query: 388 GSQTIKVNGAAAAIDTPAFLQKVGNEDKTYLPLAALATGLGFDVNYSSKLRTAFIN 443 GS VNG A+D F+ D+ +P+ +A +G V++ + RT I Sbjct: 86 GSPEAVVNGEKVALDVAPFIVS----DRMMVPVRFVAEEIGLLVDWEQETRTVLIT 137 >A3DKA4.1 A3DKA4_CLOTH Copper amine oxidase-like protein Length = 495 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 6/110 (5%) Query: 333 KGVELDTPKKPILKNGQNFLALKDILNAVGATGKWDNKTQSATIVYGGKTVVITIGSQTI 392 K + D P PI++NG+ + L+ I A+ AT WD+KT++ T G T+V+TIG++T+ Sbjct: 388 KRIRFDQP--PIIQNGRTLVPLRAIFEAMNATVSWDDKTKTVTAKKGDTTIVMTIGNKTM 445 Query: 393 KVNGAAAAIDTPAFLQKVGNEDKTYLPLAALATGLGFDVNYSSKLRTAFI 442 K NG A +D P Q V +T +P A+A G V++ RT I Sbjct: 446 KKNGVAIELDVPP--QIVNG--RTLVPARAVAESFGAKVDWDGSTRTVTI 491 >B4B9G3.1 B4B9G3_CLOTM Copper amine oxidase domain protein Length = 526 Score = 70.1 bits (170), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 41/110 (37%), Positives = 62/110 (56%), Gaps = 6/110 (5%) Query: 333 KGVELDTPKKPILKNGQNFLALKDILNAVGATGKWDNKTQSATIVYGGKTVVITIGSQTI 392 K + D P PI++NG+ + L+ I A+ AT WD+KT++ T G T+V+TIG++T+ Sbjct: 419 KRIRFDQP--PIIQNGRTLVPLRAIFEAMNATVSWDDKTKTVTAKKGDTTIVMTIGNKTM 476 Query: 393 KVNGAAAAIDTPAFLQKVGNEDKTYLPLAALATGLGFDVNYSSKLRTAFI 442 K NG A +D P Q V +T +P A+A G V++ RT I Sbjct: 477 KKNGVAIELDVPP--QIVNG--RTLVPARAVAESFGAKVDWDGSTRTVTI 522 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.315 0.131 0.372 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,149,566,333 Number of extensions: 74613749 Number of successful extensions: 257897 Number of sequences better than 1.0e-05: 52 Number of HSP's gapped: 257980 Number of HSP's successfully gapped: 52 Length of query: 444 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 305 Effective length of database: 1,751,175,118 Effective search space: 534108410990 Effective search space used: 534108410990 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 133 (55.8 bits)