BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0021.p (349 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K580.1 B3K580_9BACI Putative uncharacterized protein 369 e-100 B1D8S8.1 B1D8S8_9BACL Putative uncharacterized protein 276 2e-72 C5D5W6.1 C5D5W6_9BACI Putative uncharacterized protein 166 4e-39 A4IKM3.1 A4IKM3_GEOTN Putative uncharacterized protein 161 1e-37 Q5L2R2.1 Q5L2R2_GEOKA Hypothetical conserved protein 161 1e-37 >B3K580.1 B3K580_9BACI Putative uncharacterized protein Length = 340 Score = 369 bits (948), Expect = e-100, Method: Compositional matrix adjust. Identities = 185/345 (53%), Positives = 228/345 (66%), Gaps = 16/345 (4%) Query: 9 EQQWKQSLYGYVDQVNKGRVAPGAEQQRSTVRDPRFLLEQGERSRRLTQWYERRGITPLR 68 E+ WKQ+LY YV+Q N+ RV + + V D +L+E+GER RL WY R TPL+ Sbjct: 8 EKPWKQALYIYVNQYNQNRVDYSSGLKEQIVADLNYLVERGERQFRLQSWYAEREATPLK 67 Query: 69 SETGVRTLRTIRQNPSEVVADVALHNALYYEKGGITHREDVIESERLTFVLEGSTWEIAA 128 SET R R +R+ +VVADV LH+ YYEK G+THRED + ERLT + +G W I Sbjct: 68 SETRARLQRILRETEDDVVADVRLHSVFYYEKRGMTHREDTVFRERLTLIRDGDAWLIVG 127 Query: 129 VERSVPERNSMGRV----AEAEPALRLSKWGEALPVPQPSQPLLNKDILRSITGSKEVXX 184 +ER ER+ + R A ++ A R +PS P +N + + + + Sbjct: 128 IERLQDERHPLQRADIPGASSDAAGR-----------EPSTPFMNGRVYAAGSSPRSGRY 176 Query: 185 XXXXXXXXXXXWWKDGNPEFEVFDVDCTNYVSQCLFAGGAPINYTGKRETGWWYKGYNGA 244 WW GNPEFE FDVDCTNY+SQCLFAG API+YTGKRETGWWYKGY Sbjct: 177 EREAAAAYADRWWDSGNPEFEEFDVDCTNYISQCLFAGKAPIHYTGKRETGWWYKGYVNK 236 Query: 245 QEWWSFSWAVSDSLQRYLSAGRSSGLRAETVERADQLMLGDIIQYDWDGNGHYQHSTIVT 304 +EWWS+SWAVS+S YL+A ++GLRAE VER +QLMLGD+I YDWDG+G +QHSTIVT Sbjct: 237 REWWSYSWAVSNSFAHYLNAS-TTGLRAERVERPEQLMLGDVIVYDWDGDGAFQHSTIVT 295 Query: 305 AFDAAGQPLVNARTVSSRHRFWDYRDSYAWTDRTAYRFFHINDYL 349 AFDA G PLVNA TVSSRHR+WDYRDSYAW D T YRF+HI DY Sbjct: 296 AFDAGGMPLVNAHTVSSRHRYWDYRDSYAWNDNTEYRFYHIPDYF 340 >B1D8S8.1 B1D8S8_9BACL Putative uncharacterized protein Length = 453 Score = 276 bits (707), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 142/291 (48%), Positives = 182/291 (62%), Gaps = 6/291 (2%) Query: 62 RGITPLRSETGVRTLRTIRQNPSEVVADVALHNALYYEKGGITHREDVIESERLTFVLEG 121 RG+ P R ET ++ + ++ +EV V LH E+ G+ + E+ E ERL Sbjct: 166 RGVLPARGETKAELIK-VNESTAEVSVLVKLHIKRQMEQSGLYYLEERTEIERLWLNQTA 224 Query: 122 STWEIAAVERSVPERNSMGRVAEAEPALR--LSKWGEALPVPQPSQPLLNKDILRSITGS 179 W I +E + ER V+E A L + EA S P LN D + Sbjct: 225 GDWRIFRIEPVIAERRPRFGVSEYSTATEEDLDQIREASVFR--STPFLNTDQYPQLKQR 282 Query: 180 -KEVXXXXXXXXXXXXXWWKDGNPEFEVFDVDCTNYVSQCLFAGGAPINYTGKRETGWWY 238 K + WW +GNP +E FDV+CTNY+SQCLFAG AP+NYTGKRE+GWWY Sbjct: 283 VKGIPYRRELAAAYADRWWNEGNPAYEEFDVNCTNYISQCLFAGHAPMNYTGKRESGWWY 342 Query: 239 KGYNGAQEWWSFSWAVSDSLQRYLSAGRSSGLRAETVERADQLMLGDIIQYDWDGNGHYQ 298 KG++G +EWWS+SWAVS++L YLS R+SGL A V+ ++L LGD+I YDW+G+ YQ Sbjct: 343 KGFSGGKEWWSYSWAVSNALTNYLSGKRNSGLHATVVQSVEELQLGDVITYDWNGDNRYQ 402 Query: 299 HSTIVTAFDAAGQPLVNARTVSSRHRFWDYRDSYAWTDRTAYRFFHINDYL 349 HSTI+TAFDAAG PLVNA TV SRHRFWDYRDSYAWT++T YRFFHI D+ Sbjct: 403 HSTIITAFDAAGMPLVNANTVPSRHRFWDYRDSYAWTEQTRYRFFHIADHF 453 >C5D5W6.1 C5D5W6_9BACI Putative uncharacterized protein Length = 310 Score = 166 bits (419), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 80/152 (52%), Positives = 98/152 (64%), Gaps = 6/152 (3%) Query: 196 WWKDGNPEFEVFDVDCTNYVSQCLFAGGAPINYTGKRETGWWYKGYNGAQEWWSFSWAVS 255 WW NP F F VDCTN++SQCL+AGGAP+ R GWW K N WS+SWAV+ Sbjct: 163 WWNSYNPAFPRFKVDCTNFISQCLYAGGAPMTGYPNRAKGWWCKNNN-----WSYSWAVA 217 Query: 256 DSLQRYLSAGRSSGLRAETVERADQLMLGDIIQYDWDGNGHYQHSTIVTAFDAAGQPLVN 315 S + YLS R GL+A V ++LM GD+I YD+ GNG + H+TIV A DA G PLVN Sbjct: 218 HSFRWYLSGARV-GLQAVEVPSPERLMAGDVICYDFQGNGRFDHTTIVVAKDANGMPLVN 276 Query: 316 ARTVSSRHRFWDYRDSYAWTDRTAYRFFHIND 347 A T +SR R+W Y DS A+T Y+FFHI D Sbjct: 277 AHTTNSRMRYWSYEDSSAYTPNIRYKFFHIID 308 >A4IKM3.1 A4IKM3_GEOTN Putative uncharacterized protein Length = 288 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 82/152 (53%), Positives = 100/152 (65%), Gaps = 6/152 (3%) Query: 196 WWKDGNPEFEVFDVDCTNYVSQCLFAGGAPINYTGKRETGWWYKGYNGAQEWWSFSWAVS 255 WW NP F F VDCTN+VSQCL+AGGAP+ R GWW + NG+ WS+SWAV+ Sbjct: 141 WWNRHNPAFPSFSVDCTNFVSQCLYAGGAPMTGYPNRARGWWCQ--NGS---WSYSWAVA 195 Query: 256 DSLQRYLSAGRSSGLRAETVERADQLMLGDIIQYDWDGNGHYQHSTIVTAFDAAGQPLVN 315 SL+ YLS R GL+A V +QLM GD+I YD+ G+G + HSTIV A D G PLVN Sbjct: 196 HSLRWYLSGSRI-GLQAVEVPEPEQLMAGDVICYDFQGDGRFDHSTIVVAKDQDGMPLVN 254 Query: 316 ARTVSSRHRFWDYRDSYAWTDRTAYRFFHIND 347 A T +SR R+W Y DS A+T Y+FFHI D Sbjct: 255 AHTTNSRMRYWSYEDSSAYTPNIRYKFFHIID 286 >Q5L2R2.1 Q5L2R2_GEOKA Hypothetical conserved protein Length = 287 Score = 161 bits (407), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 116/318 (36%), Positives = 158/318 (49%), Gaps = 46/318 (14%) Query: 33 EQQRSTVRDPRFLLEQGERSRRLTQWYERRGITPLRSETGVRTL--RTIRQNPSEVVADV 90 E+ RS V + E+ R +RL Q +RG +R + + +TI + V + Sbjct: 11 ERARSFVSESNIRSEEAARKQRLCQ---KRGAEIVRCTIRGQIVGRQTIEREAK--VMYI 65 Query: 91 ALHNALYYEKGGITHREDVIESERLTFVLEGSTWEIAAVERSVPERNSMGRVAEAEPALR 150 A H L ++G + E V ER + G + N +GR EA P + Sbjct: 66 AHHQFLIKQRGSLYIEEQV--EERCACFVRGELVTDEPI-------NRLGRDMEA-PRVE 115 Query: 151 LSKW-GEALPVPQPSQPLLNKDILRSITGSKEVXXXXXXXXXXXXXWWKDGNPEFEVFDV 209 +W GE L D R++ ++ WW NP F F V Sbjct: 116 REQWTGERLS--------YQYDRARAVRYAE--------------TWWNRHNPVFPSFPV 153 Query: 210 DCTNYVSQCLFAGGAPINYTGKRETGWWYKGYNGAQEWWSFSWAVSDSLQRYLSAGRSSG 269 DCTN+VSQCL+AGGAP+ R GWW + NG+ WS+SWAV+ + + YLS R G Sbjct: 154 DCTNFVSQCLYAGGAPMTGYPNRARGWWCQ--NGS---WSYSWAVAHAFRWYLSGSRI-G 207 Query: 270 LRAETVERADQLMLGDIIQYDWDGNGHYQHSTIVTAFDAAGQPLVNARTVSSRHRFWDYR 329 L+A V +QLM GD+I YD+ G+G + HSTIV A D G PLVNA T +SR R+W Y Sbjct: 208 LQAVEVAEPEQLMAGDVICYDFQGDGRFDHSTIVVAKDQNGMPLVNAHTTNSRMRYWSYE 267 Query: 330 DSYAWTDRTAYRFFHIND 347 DS A+T Y+FFHI D Sbjct: 268 DSSAYTPNIRYKFFHIID 285 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.133 0.421 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,141,878,230 Number of extensions: 86579085 Number of successful extensions: 186732 Number of sequences better than 1.0e-05: 148 Number of HSP's gapped: 186529 Number of HSP's successfully gapped: 148 Length of query: 349 Length of database: 3,060,696,203 Length adjustment: 136 Effective length of query: 213 Effective length of database: 1,779,438,163 Effective search space: 379020328719 Effective search space used: 379020328719 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 132 (55.5 bits)