BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0443.0017.p
         (750 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Q5YRT9.1 Q5YRT9_NOCFA Putative two-component system response reg...    77   5e-12
B8HNP3.1 B8HNP3_CYAP4 Two component transcriptional regulator, L...    77   6e-12
A3DEX0.1 A3DEX0_CLOTH Two component transcriptional regulator, L...    75   2e-11
B4BE61.1 B4BE61_CLOTM Two component transcriptional regulator, L...    75   2e-11
C5D564.1 C5D564_9BACI Transcriptional regulator, LuxR family           75   2e-11

>Q5YRT9.1 Q5YRT9_NOCFA Putative two-component system response regulator
          Length = 220

 Score = 77.4 bits (189), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 35/77 (45%), Positives = 53/77 (68%)

Query: 671 NSAALKSPKEEWGISPREEEVLELIILGKTNKEIASALFISEHTVKNHLSRIFNKMNVTD 730
            +A+ K   E   ++PRE EVLEL+  G +N EIA ALF++E TVK H+S++F+K+N+ D
Sbjct: 144 RAASRKPAPELAALTPREREVLELVARGMSNTEIAEALFVAEQTVKTHVSKVFSKLNLRD 203

Query: 731 RSQIIALIYKRILNSEG 747
           R+Q + L Y+  L + G
Sbjct: 204 RAQAVVLAYESGLVTPG 220


>B8HNP3.1 B8HNP3_CYAP4 Two component transcriptional regulator, LuxR family
          Length = 217

 Score = 77.0 bits (188), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 36/73 (49%), Positives = 54/73 (73%), Gaps = 1/73 (1%)

Query: 661 EQAVSPGKLLNSAALKSPKEEWGISPREEEVLELIILGKTNKEIASALFISEHTVKNHLS 720
           E+A++P  + +S     P E  G++PRE EVL LI+ G +N+EIA AL+ISE TVKNH+S
Sbjct: 135 EKAIAPPAV-SSTPPPLPPELAGLTPREREVLSLIVAGASNREIAEALYISERTVKNHIS 193

Query: 721 RIFNKMNVTDRSQ 733
           RI +++++ DR+Q
Sbjct: 194 RILSQLHLRDRTQ 206


>A3DEX0.1 A3DEX0_CLOTH Two component transcriptional regulator, LuxR family
          Length = 216

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query: 676 KSPKEEWGISPREEEVLELIILGKTNKEIASALFISEHTVKNHLSRIFNKMNVTDRSQII 735
           K+ K E  ++PRE EVLELI  G  NKEIA  LFISE TVKNH+S IF K+NV+DR+Q  
Sbjct: 147 KAKKTENDLTPRELEVLELIAQGLINKEIAKRLFISEKTVKNHVSNIFKKLNVSDRTQAA 206

Query: 736 ALIYK 740
              YK
Sbjct: 207 IYAYK 211


>B4BE61.1 B4BE61_CLOTM Two component transcriptional regulator, LuxR family
          Length = 216

 Score = 75.5 bits (184), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 39/65 (60%), Positives = 46/65 (70%)

Query: 676 KSPKEEWGISPREEEVLELIILGKTNKEIASALFISEHTVKNHLSRIFNKMNVTDRSQII 735
           K+ K E  ++PRE EVLELI  G  NKEIA  LFISE TVKNH+S IF K+NV+DR+Q  
Sbjct: 147 KAKKTENDLTPRELEVLELIAQGLINKEIAKRLFISEKTVKNHVSNIFKKLNVSDRTQAA 206

Query: 736 ALIYK 740
              YK
Sbjct: 207 IYAYK 211


>C5D564.1 C5D564_9BACI Transcriptional regulator, LuxR family
          Length = 556

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 38/89 (42%), Positives = 58/89 (65%), Gaps = 11/89 (12%)

Query: 669 LLNSAALKSPKEEWGI-------SPREEEVLELIILGKTNKEIASALFISEHTVKNHLSR 721
           ++     ++PK+E  I       + RE +VL L++ G +N+EIA  LFIS HTVKNH++ 
Sbjct: 466 VMKQNTYQTPKQELNIDMLSERLTTREMDVLNLLVQGCSNREIADRLFISIHTVKNHITN 525

Query: 722 IFNKMNVTDRSQIIALIY----KRILNSE 746
           IF K+ V DRSQ+IAL+Y    ++++N E
Sbjct: 526 IFQKIGVNDRSQLIALVYQLNNRKVINEE 554


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.318    0.135    0.387 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 4,135,454,154
Number of extensions: 168795916
Number of successful extensions: 388694
Number of sequences better than 1.0e-05: 790
Number of HSP's gapped: 388747
Number of HSP's successfully gapped: 793
Length of query: 750
Length of database: 3,060,696,203
Length adjustment: 144
Effective length of query: 606
Effective length of database: 1,704,070,043
Effective search space: 1032666446058
Effective search space used: 1032666446058
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 135 (56.6 bits)