BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0008.p (392 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K574.1 B3K574_9BACI Superoxide dismutase EC=1.15.1.1 476 e-132 C0ZAF4.1 C0ZAF4_BREBN Probable superoxide dismutase EC=1.15.1.1 332 4e-89 Q65IH9.1 Q65IH9_BACLD Superoxide dismutase EC=1.15.1.1 315 4e-84 Q2B678.1 Q2B678_9BACI Superoxide dismutase EC=1.15.1.1 311 8e-83 C5D3M1.1 C5D3M1_9BACI Superoxide dismutase EC=1.15.1.1 310 1e-82 >B3K574.1 B3K574_9BACI Superoxide dismutase EC=1.15.1.1 Length = 392 Score = 476 bits (1225), Expect = e-132, Method: Compositional matrix adjust. Identities = 249/395 (63%), Positives = 285/395 (72%), Gaps = 6/395 (1%) Query: 1 MPDQYGQVLPVRILEEIAFWKKQEQEHTEVIKGVVPQLEKPYVKLLDEWAVVFEATGAAT 60 M YG LPVR+LEEI FWK QE++H +IK VVP LE YVK+LD+WAVVF T A Sbjct: 1 MLFHYGAKLPVRLLEEIRFWKHQERKHLALIKAVVPDLEPVYVKMLDQWAVVFSDTEKAA 60 Query: 61 RQLME---ASRASSPAELAAGTEQLLQVACSQSREFIRQQHALMEESAAVKAQPLAGAVL 117 +L+ + AS ++ A EQLL+ +C QSREFIRQ H+L E S AV+ PLAG VL Sbjct: 61 DELLRHILSYNASPTPQMLAQVEQLLRASCEQSREFIRQLHSLKENSEAVQKVPLAGTVL 120 Query: 118 LHIIRESEYVEALLNTLSVPGIAPGWTRESAAPLPETADELNARDKKAKHEPQAPMASPL 177 H+IRESEY LN L A R +P + L+ P+A ++ Sbjct: 121 HHVIRESEY---FLNALETLNAAGALERFMDVDMPLQSMTLHEATSPPPSTPEAELSIQG 177 Query: 178 SGQQEPGTVPIGGHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENKLAEA 237 G VPIGGH LPPLPYA+NALEPYIDEKTMRIHHD HHQSYVDGLNKAE KL EA Sbjct: 178 MGDSGGKAVPIGGHRLPPLPYAFNALEPYIDEKTMRIHHDIHHQSYVDGLNKAEKKLEEA 237 Query: 238 RKTKDFDLVKHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFK 297 RK+ DF+LVKHWERELAF+GAGHYLHTIFWN+M+P+GGG P G L I+ FGS+D FK Sbjct: 238 RKSGDFELVKHWERELAFHGAGHYLHTIFWNIMNPRGGGEPGGELAQQIKKDFGSFDRFK 297 Query: 298 EQFTEAANKVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKH 357 + FTEAA+KVEGGGWAILVWSPRS RLEIL AEKHQNLSQWDVVPLLALDVWEHAYYLKH Sbjct: 298 KHFTEAADKVEGGGWAILVWSPRSHRLEILQAEKHQNLSQWDVVPLLALDVWEHAYYLKH 357 Query: 358 QNNRADYIKDWWKVVHWPYVSERFNAARKLVWQPF 392 QN R DYI DWW VV+WP V+ERF A KL W+PF Sbjct: 358 QNKRKDYINDWWNVVYWPEVAERFKHASKLKWKPF 392 >C0ZAF4.1 C0ZAF4_BREBN Probable superoxide dismutase EC=1.15.1.1 Length = 322 Score = 332 bits (851), Expect = 4e-89, Method: Compositional matrix adjust. Identities = 153/228 (67%), Positives = 181/228 (79%), Gaps = 4/228 (1%) Query: 169 PQAPMASPLSGQQEP----GTVPIGGHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYV 224 P P G +EP V +G HTLPPLPYAYNALEPYIDE TM+IHH+K HQ YV Sbjct: 95 PVVPEHVSYPGAREPVRAARPVAVGRHTLPPLPYAYNALEPYIDEATMQIHHNKLHQKYV 154 Query: 225 DGLNKAENKLAEARKTKDFDLVKHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLD 284 D LN AE KL++AR++ +FDL++HWERELAFNGAGHYLHTIFW+ MSP GGG P+G L Sbjct: 155 DDLNAAERKLSDARESGNFDLIRHWERELAFNGAGHYLHTIFWSSMSPNGGGTPSGDLAA 214 Query: 285 AIEHSFGSYDAFKEQFTEAANKVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLL 344 AI FGSYDAF+ QF++AA KVEG GWAILVW+PR+ LEILTAEKHQNLSQWDV+PLL Sbjct: 215 AINRYFGSYDAFQRQFSQAAEKVEGPGWAILVWAPRAHHLEILTAEKHQNLSQWDVIPLL 274 Query: 345 ALDVWEHAYYLKHQNNRADYIKDWWKVVHWPYVSERFNAARKLVWQPF 392 ALDVWEHAY+L +QN R Y+++WW +V+WPYV ERF ARKL W+P+ Sbjct: 275 ALDVWEHAYFLAYQNQRDKYVENWWNIVNWPYVEERFEQARKLRWEPY 322 >Q65IH9.1 Q65IH9_BACLD Superoxide dismutase EC=1.15.1.1 Length = 281 Score = 315 bits (808), Expect = 4e-84, Method: Compositional matrix adjust. Identities = 144/215 (66%), Positives = 174/215 (80%) Query: 178 SGQQEPGTVPIGGHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENKLAEA 237 +G+Q TVPIGGH LP LPY+Y+ALEPYI ++ M +HH KHHQSYVDGLN+AE +L +A Sbjct: 67 AGRQPFRTVPIGGHRLPSLPYSYSALEPYISKEIMFLHHTKHHQSYVDGLNRAEKELQKA 126 Query: 238 RKTKDFDLVKHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFK 297 R+TK FDLV HWERELAF+GAGHYLHTIFW M P+G RPTG LL+ I SFGSY AFK Sbjct: 127 RQTKQFDLVNHWERELAFHGAGHYLHTIFWYAMHPKGKRRPTGELLEMINRSFGSYSAFK 186 Query: 298 EQFTEAANKVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKH 357 E F+EAA KVEG GWAILVW+PRS RLEIL AEKHQ +SQWDV+PLL LDVWEHAYYL++ Sbjct: 187 EHFSEAAKKVEGVGWAILVWAPRSHRLEILIAEKHQLMSQWDVIPLLPLDVWEHAYYLQY 246 Query: 358 QNNRADYIKDWWKVVHWPYVSERFNAARKLVWQPF 392 +N +A Y+ +WW VV W RF +A++++W+PF Sbjct: 247 KNEKAKYVDNWWNVVDWREPERRFASAKRVLWEPF 281 >Q2B678.1 Q2B678_9BACI Superoxide dismutase EC=1.15.1.1 Length = 296 Score = 311 bits (796), Expect = 8e-83, Method: Compositional matrix adjust. Identities = 137/207 (66%), Positives = 169/207 (81%) Query: 186 VPIGGHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENKLAEARKTKDFDL 245 +P GGH+LPPLPY Y++LEPYI E+ MR+HH KHHQSYVDGLN+AE L +AR+ DF L Sbjct: 90 IPAGGHSLPPLPYGYDSLEPYIAEEIMRLHHTKHHQSYVDGLNRAEEMLKKARQDGDFKL 149 Query: 246 VKHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFKEQFTEAAN 305 VKHW RELAF+G+GHYLHTIFWN MSP GGG+P+G LL IE FGS++ FK+ F+EAA Sbjct: 150 VKHWSRELAFHGSGHYLHTIFWNNMSPSGGGKPSGALLGEIEKYFGSFEQFKKHFSEAAK 209 Query: 306 KVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKHQNNRADYI 365 +VEG GWAILVWSPRSR LEIL +E+H L+QWD +P+LALDVWEHAYYL+++NNRADY+ Sbjct: 210 QVEGVGWAILVWSPRSRHLEILQSERHMLLTQWDTIPILALDVWEHAYYLQYKNNRADYV 269 Query: 366 KDWWKVVHWPYVSERFNAARKLVWQPF 392 +WW +V+W ERF A +L W+PF Sbjct: 270 NNWWNIVNWKDAEERFQKASQLKWKPF 296 >C5D3M1.1 C5D3M1_9BACI Superoxide dismutase EC=1.15.1.1 Length = 348 Score = 310 bits (794), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 136/207 (65%), Positives = 166/207 (80%) Query: 186 VPIGGHTLPPLPYAYNALEPYIDEKTMRIHHDKHHQSYVDGLNKAENKLAEARKTKDFDL 245 V G H LPPLPY+Y+ALEP+I + MR+HH KHHQSYVDGLNKAE + +AR+T D++L Sbjct: 142 VAAGRHVLPPLPYSYDALEPHISREIMRLHHTKHHQSYVDGLNKAEKMMKKARETNDYEL 201 Query: 246 VKHWERELAFNGAGHYLHTIFWNVMSPQGGGRPTGPLLDAIEHSFGSYDAFKEQFTEAAN 305 +KHWERE AF+G+GHYLHTIFWN M P+GGG+P G LL+ I+ FGS++ FK FTEAA Sbjct: 202 LKHWEREAAFHGSGHYLHTIFWNNMHPKGGGQPRGELLEQIKRDFGSFERFKRHFTEAAK 261 Query: 306 KVEGGGWAILVWSPRSRRLEILTAEKHQNLSQWDVVPLLALDVWEHAYYLKHQNNRADYI 365 VEG GWA+LVWSPRS RLEIL EKHQ ++QWD +PLL +DVWEHAYYL+++N+RA YI Sbjct: 262 SVEGVGWALLVWSPRSHRLEILQTEKHQFMTQWDTIPLLVIDVWEHAYYLQYKNDRAAYI 321 Query: 366 KDWWKVVHWPYVSERFNAARKLVWQPF 392 +WW VVHW V ERF ARKL W+PF Sbjct: 322 NNWWNVVHWRDVEERFEQARKLRWKPF 348 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.132 0.409 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,474,279,358 Number of extensions: 106574334 Number of successful extensions: 301933 Number of sequences better than 1.0e-05: 3880 Number of HSP's gapped: 295386 Number of HSP's successfully gapped: 3883 Length of query: 392 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 254 Effective length of database: 1,760,596,133 Effective search space: 447191417782 Effective search space used: 447191417782 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 132 (55.5 bits)