BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0443.0006.p
         (83 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3K569.1 B3K569_9BACI Putative uncharacterized protein                 85   3e-15
B1D8S3.1 B1D8S3_9BACL Putative uncharacterized protein                 75   3e-12

>B3K569.1 B3K569_9BACI Putative uncharacterized protein
          Length = 78

 Score = 84.7 bits (208), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 47/83 (56%), Positives = 55/83 (66%), Gaps = 6/83 (7%)

Query: 1  MNIALPIITXXXXXXXXXXXXXYYLRRQMTAMQNDPEMLQKVAKQMGYNLNGKQMQRAQQ 60
          M+I +PIIT             +YLR+Q+  MQNDP+MLQK+AKQMGYN+N KQMQRAQQ
Sbjct: 1  MDIVIPIITLIVGLVGGFFIGVFYLRKQLEKMQNDPQMLQKMAKQMGYNMNSKQMQRAQQ 60

Query: 61 MMKNGNQPGRAPAAGKRQGRKGK 83
          MMKN       P  GK QGRK K
Sbjct: 61 MMKN------QPMPGKGQGRKRK 77


>B1D8S3.1 B1D8S3_9BACL Putative uncharacterized protein
          Length = 71

 Score = 74.7 bits (182), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/67 (55%), Positives = 46/67 (68%)

Query: 2  NIALPIITXXXXXXXXXXXXXYYLRRQMTAMQNDPEMLQKVAKQMGYNLNGKQMQRAQQM 61
          NI +PI+T             +YLR+Q+  MQ+DPEM+QK+AKQMGYNLN +QM RAQQM
Sbjct: 3  NIIIPIVTLIVGVAGGFFIGVFYLRKQLEKMQSDPEMIQKMAKQMGYNLNKQQMNRAQQM 62

Query: 62 MKNGNQP 68
          MKN   P
Sbjct: 63 MKNQKMP 69


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.317    0.129    0.365 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 378,288,206
Number of extensions: 10161402
Number of successful extensions: 35070
Number of sequences better than 1.0e-05: 2
Number of HSP's gapped: 35069
Number of HSP's successfully gapped: 2
Length of query: 83
Length of database: 3,060,696,203
Length adjustment: 53
Effective length of query: 30
Effective length of database: 2,561,382,408
Effective search space: 76841472240
Effective search space used: 76841472240
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 126 (53.1 bits)