BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0004.p (205 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K567.1 B3K567_9BACI Signal peptidase I EC=3.4.21.89 214 3e-54 B1D8R9.1 B1D8R9_9BACL Signal peptidase I 178 3e-43 A4IPS1.1 A4IPS1_GEOTN Signal peptidase I EC=3.4.21.89 131 4e-29 B4BNS9.1 B4BNS9_9BACI Signal peptidase I EC=3.4.21.89 129 1e-28 C5D8U7.1 C5D8U7_9BACI Signal peptidase I EC=3.4.21.89 129 2e-28 >B3K567.1 B3K567_9BACI Signal peptidase I EC=3.4.21.89 Length = 200 Score = 214 bits (546), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 99/175 (56%), Positives = 128/175 (73%) Query: 31 TGWVRDLRDWLVTAAIVFALMSLLNIFVFNVSTVIGQSMQPTLFEGEKLIISKISLTFAS 90 GW +L DW+ T AI F +M LLN+FVFN+S V G+SMQPTL E+L I+K+ F+ Sbjct: 26 NGWAAELWDWVKTIAIAFVIMVLLNMFVFNLSMVKGESMQPTLVASERLFINKVVYRFSE 85 Query: 91 PRRSDVVVLHDPSTGPDRKEYLVKRVIGIPGDRIEVRNHKLYVNGKLIGESYVDTEIQDP 150 P DV+VL DPS GPD+KE+LVKRV+G+PGD IEV++ KLYVNG E Y D I+DP Sbjct: 86 PSHGDVIVLKDPSDGPDKKEFLVKRVVGVPGDTIEVKDQKLYVNGVAQEEGYTDVPIEDP 145 Query: 151 DFAELTVKQGTYFVMGDNRHAGASKDSRYFGAVPQNRIVGKAAYIWWPLSKANAL 205 F +T+++G YFVMGDNRH G SKDSR FG+V ++ IVG+A +I+WPLS+ L Sbjct: 146 GFEPVTLEEGRYFVMGDNRHLGKSKDSRMFGSVKESDIVGRAEFIFWPLSEIKKL 200 >B1D8R9.1 B1D8R9_9BACL Signal peptidase I Length = 194 Score = 178 bits (451), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 83/173 (47%), Positives = 117/173 (67%) Query: 33 WVRDLRDWLVTAAIVFALMSLLNIFVFNVSTVIGQSMQPTLFEGEKLIISKISLTFASPR 92 W +++ +W T I F ++ +L++FVFN+STV G SM+PTL + E L ++K + +P+ Sbjct: 22 WFKEVLEWAKTITISFLIVMVLHLFVFNLSTVEGHSMEPTLQDREWLFVNKAAYLIGNPK 81 Query: 93 RSDVVVLHDPSTGPDRKEYLVKRVIGIPGDRIEVRNHKLYVNGKLIGESYVDTEIQDPDF 152 D+V+L DPS K++LVKRV+G+ GDRIE+ N +LY NG+ + E+Y D EI+D DF Sbjct: 82 LGDIVILEDPSAYGTEKDFLVKRVVGVAGDRIEIYNKRLYRNGEQVSEAYTDVEIEDLDF 141 Query: 153 AELTVKQGTYFVMGDNRHAGASKDSRYFGAVPQNRIVGKAAYIWWPLSKANAL 205 + V +G YFVMGDNRHA ASKDSR FG VP+ I G+A I WP + L Sbjct: 142 MPIIVPKGQYFVMGDNRHARASKDSRIFGTVPRTMIHGRADIILWPFKQVKVL 194 >A4IPS1.1 A4IPS1_GEOTN Signal peptidase I EC=3.4.21.89 Length = 185 Score = 131 bits (329), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 104/181 (57%), Gaps = 22/181 (12%) Query: 40 WLVTAAIVFALMSLLNIFVFNVSTVIGQSMQPTLFEGEKLIISKISLTFASPRRSDVVVL 99 W+ T I L S + F+F V GQSM PTL + +++I++KI +F P R D++V Sbjct: 11 WMKTIIIAILLASSVRYFLFAPFVVEGQSMMPTLHDQDRMIVNKIKYSFVKPERFDIIVF 70 Query: 100 HDPSTGPDRKEYLVKRVIGIPGDRIEVRNHKLYVNGKLIGESYVD------------TE- 146 H D+K+Y +KR+IG+PGDRIE +N LY+NGK E Y+D TE Sbjct: 71 H----TKDKKDY-IKRIIGLPGDRIEYKNDTLYINGKAYKEPYLDEYKKQNKSGLPLTES 125 Query: 147 --IQDPDFAELTVKQGTYFVMGDNRHAGASKDSRYFGAVPQNRIVGKAAYIWWPLSKANA 204 ++D TV +G FVMGDNR SKDSR+ GA+P + +VG+A I WP ++ Sbjct: 126 FTLKDTPIGRSTVPEGYLFVMGDNRR--NSKDSRHIGAIPMDDVVGEANIICWPFNRIQI 183 Query: 205 L 205 + Sbjct: 184 M 184 >B4BNS9.1 B4BNS9_9BACI Signal peptidase I EC=3.4.21.89 Length = 185 Score = 129 bits (325), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 73/181 (40%), Positives = 103/181 (56%), Gaps = 22/181 (12%) Query: 40 WLVTAAIVFALMSLLNIFVFNVSTVIGQSMQPTLFEGEKLIISKISLTFASPRRSDVVVL 99 W+ T I L S + F+F V GQSM PTL + ++I++KI +F P R D++V Sbjct: 11 WMKTIIIAILLASSVRYFLFAPFVVEGQSMMPTLHDQYRMIVNKIKYSFVKPERFDIIVF 70 Query: 100 HDPSTGPDRKEYLVKRVIGIPGDRIEVRNHKLYVNGKLIGESYVD------------TE- 146 H D+K+Y +KR+IG+PGDRIE +N LY+NGK E Y+D TE Sbjct: 71 HT----KDKKDY-IKRIIGLPGDRIEYKNDTLYINGKAYKEPYLDEYKKQNKSGLPLTES 125 Query: 147 --IQDPDFAELTVKQGTYFVMGDNRHAGASKDSRYFGAVPQNRIVGKAAYIWWPLSKANA 204 ++D TV +G FVMGDNR SKDSR+ GA+P + +VG+A I WP ++ Sbjct: 126 FTLKDTPIGRSTVPEGYLFVMGDNRR--NSKDSRHIGAIPMDDVVGEANIICWPFNRIQI 183 Query: 205 L 205 + Sbjct: 184 M 184 >C5D8U7.1 C5D8U7_9BACI Signal peptidase I EC=3.4.21.89 Length = 183 Score = 129 bits (324), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 78/180 (43%), Positives = 104/180 (57%), Gaps = 20/180 (11%) Query: 36 DLRDWLVTAAIVFALMSLLNIFVFNVSTVIGQSMQPTLFEGEKLIISKISLTFASPRRSD 95 +LR+WL I L + F+F V GQSM PTL +++I++K+S +P R D Sbjct: 7 ELREWLKAIVIAVLLAGGIRYFIFAPIIVDGQSMMPTLHNHDRMIVNKLSYKIGTPHRFD 66 Query: 96 VVVLHDPSTGPDRKEYLVKRVIGIPGDRIEVRNHKLYVNGKLIGESY--------VDTEI 147 +VV H + K+Y +KRVIG+PGD IE +N LYVNGK E Y VD Sbjct: 67 IVVFH----AEEGKDY-IKRVIGLPGDHIEYKNDTLYVNGKPYEEPYLEEYKKQVVDGPW 121 Query: 148 QDP-DFAEL----TVKQGTYFVMGDNRHAGASKDSRYFGAVPQNRIVGKAAYIWWPLSKA 202 +P EL TV +G FVMGDNR SKDSR+ G +P ++IVGKA+ ++WPLS A Sbjct: 122 TEPFTLEELTGRKTVPEGHLFVMGDNRR--FSKDSRHIGFIPMDKIVGKASIVYWPLSDA 179 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.137 0.408 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,236,921,484 Number of extensions: 50119210 Number of successful extensions: 128073 Number of sequences better than 1.0e-05: 1899 Number of HSP's gapped: 125332 Number of HSP's successfully gapped: 1904 Length of query: 205 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 76 Effective length of database: 1,845,385,268 Effective search space: 140249280368 Effective search space used: 140249280368 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.9 bits) S2: 128 (53.9 bits)