BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0443.0002.p (202 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3K560.1 B3K560_9BACI Superoxide dismutase EC=1.15.1.1 342 2e-92 C0Z639.1 C0Z639_BREBN Superoxide dismutase [Mn] EC=1.15.1.1 303 5e-81 B1D8R6.1 B1D8R6_9BACL Superoxide dismutase EC=1.15.1.1 302 1e-80 Q9KD10.1 SODM_BACHD Superoxide dismutase [Mn] EC=1.15.1.1 298 1e-79 B7GH93.1 B7GH93_ANOFW Superoxide dismutase EC=1.15.1.1 293 8e-78 >B3K560.1 B3K560_9BACI Superoxide dismutase EC=1.15.1.1 Length = 202 Score = 342 bits (876), Expect = 2e-92, Method: Compositional matrix adjust. Identities = 164/202 (81%), Positives = 177/202 (87%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 MAFQLPALPY N+ALEPHIDA TMEIHHDRHHNTYVTNLNAALE APELQGKS+E+L+ + Sbjct: 1 MAFQLPALPYANDALEPHIDAQTMEIHHDRHHNTYVTNLNAALENAPELQGKSLEDLIGN 60 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 L+AVPE+IRTAVRNNGGGHANH+LFWEVI I+SELGGFDKFKEDFA Sbjct: 61 LDAVPESIRTAVRNNGGGHANHSLFWEVIGPNGGGQPTGALADAINSELGGFDKFKEDFA 120 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 AATTRFGSGWAWLVVKDGKLAVTST NQD+PI EG TP+LGLDVWEHAYYL YQNKRPD Sbjct: 121 KAATTRFGSGWAWLVVKDGKLAVTSTANQDSPIMEGQTPLLGLDVWEHAYYLKYQNKRPD 180 Query: 181 YIKAFWNVVNWEEVGKRYESAK 202 YI AFWNVVNWEEVGKRY++AK Sbjct: 181 YISAFWNVVNWEEVGKRYDNAK 202 >C0Z639.1 C0Z639_BREBN Superoxide dismutase [Mn] EC=1.15.1.1 Length = 202 Score = 303 bits (777), Expect = 5e-81, Method: Compositional matrix adjust. Identities = 143/202 (70%), Positives = 164/202 (81%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 MA QLPALPY +NALEPHIDA TMEIHH RHH TYV NLNAALE +LQGKSIEEL+++ Sbjct: 1 MAHQLPALPYAHNALEPHIDAQTMEIHHGRHHATYVNNLNAALEAHADLQGKSIEELISN 60 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 L+A+PE+IRTAVRNNGGGHANHTLFWE++ I++ G FD FK +FA Sbjct: 61 LDALPESIRTAVRNNGGGHANHTLFWEIMSPNGGGAPTGELADAINAAFGSFDNFKAEFA 120 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 AATTRFGSGWAWL + GK+A++STPNQD+PI EG TPILGLDVWEHAYYLNYQNKRPD Sbjct: 121 KAATTRFGSGWAWLTAEGGKVAISSTPNQDSPIMEGKTPILGLDVWEHAYYLNYQNKRPD 180 Query: 181 YIKAFWNVVNWEEVGKRYESAK 202 YI AFWNVVNW+EV KR+ +AK Sbjct: 181 YIGAFWNVVNWDEVSKRFAAAK 202 >B1D8R6.1 B1D8R6_9BACL Superoxide dismutase EC=1.15.1.1 Length = 203 Score = 302 bits (774), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 156/202 (77%), Positives = 167/202 (82%), Gaps = 1/202 (0%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 MA QLPALPY +ALEPHIDALTMEIHH RHHN YVTNLNAALE+APELQ KS+EELL + Sbjct: 1 MAHQLPALPYAKDALEPHIDALTMEIHHGRHHNAYVTNLNAALEQAPELQDKSLEELLAN 60 Query: 61 -LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDF 119 L VP+AI+TAVRNNGGGHANH+LFWEVI IDSELGGFD FK +F Sbjct: 61 NLAIVPDAIKTAVRNNGGGHANHSLFWEVIGPNGGGAPTGALAAAIDSELGGFDAFKAEF 120 Query: 120 ATAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRP 179 A AATTRFGSGWAWL VKDGKL V+S PNQD+PI EG TPILGLDVWEHAYYLNYQNKRP Sbjct: 121 AKAATTRFGSGWAWLSVKDGKLKVSSLPNQDSPIFEGETPILGLDVWEHAYYLNYQNKRP 180 Query: 180 DYIKAFWNVVNWEEVGKRYESA 201 DYI AFWNVVNW EVGKRYE+A Sbjct: 181 DYIAAFWNVVNWAEVGKRYEAA 202 >Q9KD10.1 SODM_BACHD Superoxide dismutase [Mn] EC=1.15.1.1 Length = 202 Score = 298 bits (764), Expect = 1e-79, Method: Compositional matrix adjust. Identities = 142/202 (70%), Positives = 157/202 (77%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 MAF+LP LPYP NALEPHID TM IHH +HHNTYVT LNAALE L KSIE L++D Sbjct: 1 MAFELPKLPYPANALEPHIDEATMNIHHGKHHNTYVTKLNAALEGHSALAEKSIEALVSD 60 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 L+AVPE IRTAVRNNGGGHANHTLFW+++ I++E G FD+FKE FA Sbjct: 61 LDAVPENIRTAVRNNGGGHANHTLFWQILSPNGGGAPTGELADAINAEFGSFDQFKEKFA 120 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 AA RFGSGWAWLVV DGKL +TSTPNQD P+ EG TPILGLDVWEHAYYLNYQN+RPD Sbjct: 121 DAAANRFGSGWAWLVVNDGKLEITSTPNQDTPLMEGKTPILGLDVWEHAYYLNYQNRRPD 180 Query: 181 YIKAFWNVVNWEEVGKRYESAK 202 YI AFWNVVNW+EV KRY AK Sbjct: 181 YISAFWNVVNWDEVAKRYNEAK 202 >B7GH93.1 B7GH93_ANOFW Superoxide dismutase EC=1.15.1.1 Length = 202 Score = 293 bits (749), Expect = 8e-78, Method: Compositional matrix adjust. Identities = 138/202 (68%), Positives = 157/202 (77%) Query: 1 MAFQLPALPYPNNALEPHIDALTMEIHHDRHHNTYVTNLNAALEKAPELQGKSIEELLTD 60 MAF+LP LPY +ALEPHID TM IHH +HHN YVTNLNAALE PELQ K+IEEL+ Sbjct: 1 MAFELPQLPYAYDALEPHIDKETMNIHHTKHHNAYVTNLNAALEGHPELQSKTIEELMAH 60 Query: 61 LNAVPEAIRTAVRNNGGGHANHTLFWEVIXXXXXXXXXXXXXXXIDSELGGFDKFKEDFA 120 LN VPE IRTAVRNNGGGHANH+LFW ++ I++ G F+KFKE+F+ Sbjct: 61 LNEVPENIRTAVRNNGGGHANHSLFWTILSPNGGGEPTGELAEAINNTFGSFEKFKEEFS 120 Query: 121 TAATTRFGSGWAWLVVKDGKLAVTSTPNQDNPISEGATPILGLDVWEHAYYLNYQNKRPD 180 AA TRFGSGWAWLVV +G+L VTSTPNQD P+ EG TPILGLDVWEHAYYL YQN+RPD Sbjct: 121 KAAATRFGSGWAWLVVHNGQLEVTSTPNQDTPLMEGKTPILGLDVWEHAYYLKYQNRRPD 180 Query: 181 YIKAFWNVVNWEEVGKRYESAK 202 YI AFWNVVNW+EV KRY +AK Sbjct: 181 YISAFWNVVNWDEVAKRYAAAK 202 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.316 0.133 0.416 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,257,214,912 Number of extensions: 47960601 Number of successful extensions: 128416 Number of sequences better than 1.0e-05: 3883 Number of HSP's gapped: 119609 Number of HSP's successfully gapped: 3890 Length of query: 202 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 73 Effective length of database: 1,845,385,268 Effective search space: 134713124564 Effective search space used: 134713124564 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.6 bits) S2: 128 (53.9 bits)