BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0442.0022.p (227 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAA6.1 B3KAA6_9BACI Putative uncharacterized protein 164 4e-39 A6CPQ0.1 A6CPQ0_9BACI Putative uncharacterized protein 68 6e-10 C3C7K6.1 C3C7K6_BACTU Putative uncharacterized protein 68 7e-10 Q5WAR5.1 Q5WAR5_BACSK Putative uncharacterized protein 65 3e-09 C2VYL7.1 C2VYL7_BACCE Putative uncharacterized protein 65 5e-09 >B3KAA6.1 B3KAA6_9BACI Putative uncharacterized protein Length = 220 Score = 164 bits (416), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 78/217 (35%), Positives = 128/217 (58%) Query: 8 MKVKAMIKQNNVLREQMTPFNRSYYEDMLLGLRASKVDPVRTXXXXXXXXXXXXXGQAKG 67 M K MIK+NN L++ M P N SYY+DM++ +R+S V + QAKG Sbjct: 1 MNTKQMIKENNRLQDAMKPNNLSYYQDMVVYIRSSSVQEQKGEELLLEIAQHLLDAQAKG 60 Query: 68 KNAKQIFGEHPEDYFKEIAGSAPARKVRSKLNYYLMIPWAALTGLFSVYAVAGLLLLWST 127 K+A+++FG PE Y KE+ P K S L ++LMIPW ALT F V A+ G + +W+ Sbjct: 61 KSAEEVFGSDPESYCKELVEQLPKMKGLSSLQFHLMIPWVALTWFFFVQALVGFITMWAG 120 Query: 128 GDTEMFGQISIFTILVVGAGAIVLIEIIMKWLASLSEDDAPKPKPFDIKGLGIYVGIAII 187 G E Q+ I T++++ G+ VLI +++W+ + + A + + + +GIYV I ++ Sbjct: 121 GPVERMTQVRISTLILIAGGSYVLIHALLRWMKNDAFKPAEDKRKVNARNIGIYVAITVV 180 Query: 188 AVFLGIFLDNLFPVISLSPWVSLILAVAGGLGLKFIF 224 + G++L L PV++++PW+SL++ + G G K +F Sbjct: 181 ILVAGVWLGRLLPVLTVAPWISLVIFLIGIAGTKLLF 217 >A6CPQ0.1 A6CPQ0_9BACI Putative uncharacterized protein Length = 214 Score = 68.2 bits (165), Expect = 6e-10, Method: Compositional matrix adjust. Identities = 39/115 (33%), Positives = 56/115 (48%), Gaps = 6/115 (5%) Query: 8 MKVKAMIKQNNVLREQMTPFNRSYYEDMLLGLRASKVDPVRTXXXXXXXXXXXXXGQAKG 67 M K MI+ NNV RE++ N+ YYEDMLL +R S V Q G Sbjct: 1 MTAKEMIEINNVRREKLNEENKKYYEDMLLYIRMSNVSEKEGEELLLEILEHLLEAQENG 60 Query: 68 KNAKQIFGEHPEDYFKEIAGSAPARKVRSKLNYYLMI-----PWAAL-TGLFSVY 116 ++A+ +FG P+ Y E+ P ++ K+ YL I W L TG+FS++ Sbjct: 61 QSAEDVFGTKPKQYCDELLKGLPKESLKDKVMMYLYITASGMSWYFLVTGIFSLF 115 >C3C7K6.1 C3C7K6_BACTU Putative uncharacterized protein Length = 230 Score = 67.8 bits (164), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 10/224 (4%) Query: 8 MKVKAMIKQNNVLREQMTPFNRSYYEDMLLGLRASKVDPVRTXXXXXXXXXXXXXGQAKG 67 MK K +I+ NN RE +T N + Y DML+ +R +KV Q + Sbjct: 3 MKAKDLIELNNEKRELLTTENETAYSDMLIYIRLAKVPEYHAEELLIEILDHLIEAQQEE 62 Query: 68 KNAKQIFGEHPEDYFKEIAGSAPARKVRSKLNYYLMIPWAALTGLFSVYAVAGLLL-LWS 126 K+A IFG+ + Y E+ + P + +R +L+ L I L F+V +V L+ L+S Sbjct: 63 KSAYDIFGDDLQAYCDELIAALPKQSLREQLSIPLFITSYLLAIYFAVSSVIALVFPLFS 122 Query: 127 TGDTEMFGQISIFTILVVGAGAIVLIEIIMKWLASLSEDDAPKPKPFDIKGLG-IYVGIA 185 F I +L I+ + ++++++ D K K + LG ++ + Sbjct: 123 NEARFRFVHIDFIYLL----AFILSVHLMIRFVFDFINTDLFKNKTTIWRQLGEFFIRHS 178 Query: 186 IIAVFLGI---FLDNLFPVISLSPWVSLILAVAGGLGLKFIFFK 226 + + +GI F+ + + +SPW+ +LA++ L +F+K Sbjct: 179 LWILLIGISFLFMKQPYTTLQISPWIGALLAIS-CYALYKVFYK 221 >Q5WAR5.1 Q5WAR5_BACSK Putative uncharacterized protein Length = 227 Score = 65.5 bits (158), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 37/117 (31%), Positives = 61/117 (52%), Gaps = 2/117 (1%) Query: 9 KVKAMIKQNNVLREQMTPFNRSYYEDMLLGLRAS-KVDPVRTXXXXXXXXXXXXXGQAKG 67 ++KA+I++NN LR+Q+TP N YEDM+L +R ++ + Q G Sbjct: 8 EIKALIEENNRLRQQLTPDNLKLYEDMMLYIRTDMRLAEYESEQILMEMLHHIIDSQKDG 67 Query: 68 KNAKQIFGEHPEDYFKEIAGSAPARKVRSKLNYYLMIPWAALTGLFSVYAVAGLLLL 124 K AK +FG +P+DY +E+ P K R+ + +++ L G+ S+ G L L Sbjct: 68 KTAKDVFGGNPKDYAEELIAELPREKKRN-VAQFIIAQVVVLIGIVSLVEGLGKLFL 123 >C2VYL7.1 C2VYL7_BACCE Putative uncharacterized protein Length = 230 Score = 64.7 bits (156), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 57/224 (25%), Positives = 104/224 (46%), Gaps = 10/224 (4%) Query: 8 MKVKAMIKQNNVLREQMTPFNRSYYEDMLLGLRASKVDPVRTXXXXXXXXXXXXXGQAKG 67 M+ K +I+ NN R+ +T N + Y DML+ +R +KV T GQ + Sbjct: 3 MEAKDLIELNNQKRKLLTTENENAYSDMLIYIRLAKVPEYHTEELLIEILDHLIEGQQEE 62 Query: 68 KNAKQIFGEHPEDYFKEIAGSAPARKVRSKLNYYLMIPWAALTGLFSVYAVAGLLL-LWS 126 KNA +FG+ + Y E+ + P + +L+ L I L F+V +V L+ L+S Sbjct: 63 KNAYDMFGDDLQAYCDELIAALPKPSLWEQLSIPLFITSYLLAIYFAVSSVIALVFPLFS 122 Query: 127 TGDTEMFGQISIFTILVVGAGAIVLIEIIMKWLASLSEDDAPKPKPFDIKGL-GIYVGIA 185 F I +L I+ + ++++++ D K K + + G ++ + Sbjct: 123 NEARFKFVHIDFIYLL----AFILSVHLMIRFVFDFINTDLFKNKTTIWRHIGGFFIRHS 178 Query: 186 IIAVFLGI---FLDNLFPVISLSPWVSLILAVAGGLGLKFIFFK 226 + + +GI F+ + + +SPW+ +LA++ L IFFK Sbjct: 179 LWILLIGISFLFIKQPYTTLQISPWIGALLAIS-CYALYKIFFK 221 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.324 0.141 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,256,582,527 Number of extensions: 48392986 Number of successful extensions: 174545 Number of sequences better than 1.0e-05: 31 Number of HSP's gapped: 174577 Number of HSP's successfully gapped: 31 Length of query: 227 Length of database: 3,060,696,203 Length adjustment: 131 Effective length of query: 96 Effective length of database: 1,826,543,238 Effective search space: 175348150848 Effective search space used: 175348150848 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.0 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.5 bits) S2: 129 (54.3 bits)