BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0442.0019.p (729 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value A8MJC0.1 A8MJC0_ALKOO Methyl-accepting chemotaxis sensory transd... 411 e-112 B8G0E6.1 B8G0E6_DESHD Methyl-accepting chemotaxis sensory transd... 190 4e-46 Q24MG4.1 Q24MG4_DESHY Putative uncharacterized protein 190 4e-46 B1IMT2.1 B1IMT2_CLOBK Methyl-accepting chemotaxis protein 188 1e-45 B1KTZ7.1 B1KTZ7_CLOBM Methyl-accepting chemotaxis protein 187 5e-45 >A8MJC0.1 A8MJC0_ALKOO Methyl-accepting chemotaxis sensory transducer with Cache sensor Length = 679 Score = 411 bits (1056), Expect = e-112, Method: Compositional matrix adjust. Identities = 235/678 (34%), Positives = 355/678 (52%), Gaps = 2/678 (0%) Query: 50 RLGSMGIRGKLFLXXXXXXXXXXXXXXXXXXXQAKQIIAEDLKSSLTYEKGEIGVKVDEL 109 R IR K+F K + ++K L Y + I ++ E+ Sbjct: 2 REKKTSIRAKIFFVVIITVIVAFAGVAGIIYNNIKNTLVHNIKQELDYARENIAMRTLEI 61 Query: 110 LQPASDSVELLNANAYVRDFIGKVVSADTVTTTSGYSDLITTXXXXXXXXXXXXXVYVGL 169 L A ++E L+ N Y++DF+ + ++ +TV GY +L+ T +Y+G+ Sbjct: 62 LNTADTNIEQLDINQYIKDFLEEDMTQETVKEAGGYRNLVNTLLRIKETNGDILNIYIGV 121 Query: 170 DGVNKLITQDEFEPPADYNLKERGWYSLTAKNKRTTVTDPYIDAGSGKMVVSVSAPILDE 229 +N LIT DEF DY+ +R WY K K T +TDPYIDA +G +VV+VS PI ++ Sbjct: 122 GKINHLITHDEFVTAPDYSTVDRSWYKEAVKTKDTAITDPYIDAITGDLVVTVSRPIYND 181 Query: 230 SGKLIGVAGADISTEQITQALSAFNYNGSGYAVLIDKTGTFIHHPDSDNILLKKMSDLGG 289 +++ VAG DI+ E+I++ +S F Y SGY++L+D F+HH + IL KK+ LG Sbjct: 182 KKEIVAVAGIDITLERISEIMSNFKYGESGYSILLDGQSRFVHHNNKAMILEKKIEALGN 241 Query: 290 NWKMLGDQMVQWGSNVIRTEIDGVASYVSYAPVVENQWSVALIVPQKSAEQRLQGFQQXX 349 W+ + + + + I+ +Y+SY P+ +QW L+VP + AE L F+ Sbjct: 242 GWEHVAEIIKSGTPYTDKFLIEKEETYISYTPIGTSQWDAVLVVPAEEAEATLIAFRNIF 301 Query: 350 XXXXXXXXXXXXXXXXXXXXXXXRPIPQLTAAFRQAMTGDLSARAKVNAKGEIGVLAGGF 409 +PIP L A+ +A GDL +AK + EI LA GF Sbjct: 302 ILSISLAVVVLAVALYLLTNGILKPIPALLEAYEKAKDGDLRVKAKTFSTDEISRLANGF 361 Query: 410 NELIASQQNMXXXXXXXXXXXXXAVGNAETNVSALDGSISEISAITEELSAGMEQTAASM 469 N++I SQ+ + A+ N + N+ L+GSI E+SA TEELSAGME+TAASM Sbjct: 362 NQMIDSQRTVITNIMNETNHIIEAIDNTKQNIHHLNGSIEEVSATTEELSAGMEETAASM 421 Query: 470 EELNAGTNEIEHAVSGIXXXXXXXXXXXXQIXXXXRAERLKEGAGRSRRQADEMYGQSEE 529 EE+NA + EIE+A+ + +I RAE LK A S A+ MY +++ Sbjct: 422 EEMNATSVEIENALGSMAKQIEEGLESAKEI--SHRAENLKNNAMTSSETANRMYEETQG 479 Query: 530 KLRKAIEQSRSTAQIHALTGAILDIAAQTSLLSLNASIXXXXXXXXXXXXXXXXXXIRKL 589 KL KAI S++ +I L+ AIL I +QT+LL+LNA+I IRKL Sbjct: 480 KLVKAISDSKAIEEIKVLSDAILMITSQTNLLALNAAIEAARAGEAGRGFAVVADEIRKL 539 Query: 590 AENSRETAAEIQEVTGAVVAAVENLVEGAENMLRFVDRQVLKDYDSMQETGRQYSEDAGY 649 AE+S+ +IQ+ T V+ AV+NLVE +E +L F+D+QV+KDY + ETG QYS+DA Y Sbjct: 540 AEDSQRAVTKIQDTTTVVLEAVDNLVESSEQILGFMDQQVIKDYKILAETGEQYSKDALY 599 Query: 650 IHELVTDFSATSGQLLASIQSMHSAIXXXXXXXXXXXXXXXXXXXXXXQIISKSGGIVAE 709 + ++ +F+ TS +LAS ++M +AI I+ S IV E Sbjct: 600 VENILKNFTVTSEHVLASTEAMRTAINEVTMATNEGADGTTNIAQINSDIMGMSNEIVGE 659 Query: 710 MEEIKHSSEQLLHTVSKF 727 +E I E+L+ +VS+F Sbjct: 660 IEGITEGLEKLVQSVSRF 677 >B8G0E6.1 B8G0E6_DESHD Methyl-accepting chemotaxis sensory transducer Length = 688 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 146/507 (28%), Positives = 231/507 (45%), Gaps = 21/507 (4%) Query: 176 ITQDEFEPPADYNLKERGWYSLTAKNKRTTV-TDPYIDAGSGKMVVSVSAPILDESGKLI 234 I ++F PP E+GWY V TDPY+D S M+ S D GKL+ Sbjct: 142 IPVEKFYPP------EKGWYKTGLNGNGAIVRTDPYLDPMSNTMITSNVRSFTDADGKLV 195 Query: 235 GVAGADISTEQITQALSAFNYNGSGYAVLIDKTGTFI---HHPDSDNILLKKMSDLGGNW 291 G G D+ I+ LS+ +GY++++ +G + ++P+++ L+++ ++ G Sbjct: 196 GTLGIDVQQSVISDMLSSMKTGETGYSMIVHTSGIILADGNNPENNFKQLEEI-NIAGLD 254 Query: 292 KMLGDQMVQWGSNVIRTEIDGVASYVSYAPVVENQWSVALIVPQKSAEQRLQGFQQXXXX 351 K+ D + + +DG V+ V W +A ++ + Q Sbjct: 255 KLGSDDLTPFD-----VMVDGAKYIVNPHKVDGTDWILASLMSESELTQGANSVALMMLI 309 Query: 352 XXXXXXXXXXXXXXXXXXXXXRPIPQLTAAFRQAMTGDLSARAK---VNAKGEIGVLAGG 408 PI + GD S + K E+G + Sbjct: 310 VSVVMLLLTTVLITITANKITTPIKKSAQYLELVANGDFSQEIDSRFLARKDEVGAITNA 369 Query: 409 FNELIASQQNMXXXXXXXXXXXXXAVGNAETNVSALDGSISEISAITEELSAGMEQTAAS 468 N + S + + V NV L S+ EIS T +++A E+T+A+ Sbjct: 370 INHMKNSIKQLVNSIKSESVAIEEKVHAVMDNVVDLSKSLEEISVTTGDVAASTEETSAA 429 Query: 469 MEELNAGTNEIEHAVSGIXXXXXXXXXXXXQIXXXXRAERLKEGAGRSRRQADEMYGQSE 528 EE++A T EIE AV I +I RAE K+ ++++A +++ +++ Sbjct: 430 SEEMSATTQEIEKAVQLIAGKSQQGAVSSQEITR--RAEDTKKNVHTAQKKAADIFVETQ 487 Query: 529 EKLRKAIEQSRSTAQIHALTGAILDIAAQTSLLSLNASIXXXXXXXXXXXXXXXXXXIRK 588 KL KAI +S+ +QI LT AI+ I QT+LL+LNA+I IRK Sbjct: 488 AKLEKAIVESKVVSQIDLLTDAIMQITEQTNLLALNAAIEAARAGEAGRGFSVVSEEIRK 547 Query: 589 LAENSRETAAEIQEVTGAVVAAVENLVEGAENMLRFVDRQVLKDYDSMQETGRQYSEDAG 648 LAE S+ +IQEVT V +AV+NL + + +L F+ V DY M + +YSEDA Sbjct: 548 LAEQSKGAVMQIQEVTTKVTSAVDNLSQSSNGLLSFMSVDVNNDYQVMLDVAERYSEDAN 607 Query: 649 YIHELVTDFSATSGQLLASIQSMHSAI 675 ++ ELV DFSAT+ QLL SIQ++ AI Sbjct: 608 FVDELVADFSATTEQLLVSIQNISDAI 634 >Q24MG4.1 Q24MG4_DESHY Putative uncharacterized protein Length = 689 Score = 190 bits (483), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 147/507 (28%), Positives = 231/507 (45%), Gaps = 21/507 (4%) Query: 176 ITQDEFEPPADYNLKERGWYSLTAKNKRTTV-TDPYIDAGSGKMVVSVSAPILDESGKLI 234 I ++F PP E+GWY V TDPY+D S M+ S D GKL+ Sbjct: 143 IPVEKFYPP------EKGWYKTGLNGNGAIVRTDPYLDPMSNTMITSNVRSFTDADGKLV 196 Query: 235 GVAGADISTEQITQALSAFNYNGSGYAVLIDKTGTFI---HHPDSDNILLKKMSDLGGNW 291 G G D+ I+ LS+ +GY++++ +G + ++P+++ L+++ ++ G Sbjct: 197 GTLGIDVQQSVISDMLSSMKTGETGYSMIVHTSGIILADGNNPENNFKQLEEI-NIAGLD 255 Query: 292 KMLGDQMVQWGSNVIRTEIDGVASYVSYAPVVENQWSVALIVPQKSAEQRLQGFQQXXXX 351 K+ D + + IDG V+ V W +A ++ + Q Sbjct: 256 KLGSDDLTPFD-----VMIDGAKYIVNPHKVDGTDWILASLMSESELTQGANSVALMMLI 310 Query: 352 XXXXXXXXXXXXXXXXXXXXXRPIPQLTAAFRQAMTGDLSARAK---VNAKGEIGVLAGG 408 PI + GD S + K E+G + Sbjct: 311 VSVVMLLLTTVLITITANKITTPIKKSAQYLELVAKGDFSQEIDSRFLARKDEVGAITNA 370 Query: 409 FNELIASQQNMXXXXXXXXXXXXXAVGNAETNVSALDGSISEISAITEELSAGMEQTAAS 468 N + S + + V NV L S+ EIS T +++A E+T+A+ Sbjct: 371 INHMKNSIKQLVNSIKSESVAIEEKVHAVIDNVVDLSKSLEEISVTTGDVAASTEETSAA 430 Query: 469 MEELNAGTNEIEHAVSGIXXXXXXXXXXXXQIXXXXRAERLKEGAGRSRRQADEMYGQSE 528 EE++A T EIE AV I +I RAE K+ ++++A +++ +++ Sbjct: 431 SEEMSATTQEIEKAVQLIAGKSQQGAVSSQEITR--RAEDTKKNVHTAQKKAADIFVETQ 488 Query: 529 EKLRKAIEQSRSTAQIHALTGAILDIAAQTSLLSLNASIXXXXXXXXXXXXXXXXXXIRK 588 KL KAI +S+ +QI LT AI+ I QT+LL+LNA+I IRK Sbjct: 489 AKLEKAIVESKVVSQIDLLTDAIMQITEQTNLLALNAAIEAARAGEAGRGFSVVSEEIRK 548 Query: 589 LAENSRETAAEIQEVTGAVVAAVENLVEGAENMLRFVDRQVLKDYDSMQETGRQYSEDAG 648 LAE S+ +IQEVT V +AV+NL + + +L F+ V DY M + +YSEDA Sbjct: 549 LAEQSKGAVMQIQEVTTKVTSAVDNLSQSSNGLLSFMSVDVNNDYQVMLDVAERYSEDAN 608 Query: 649 YIHELVTDFSATSGQLLASIQSMHSAI 675 ++ ELV DFSAT+ QLL SIQ++ AI Sbjct: 609 FVDELVADFSATTEQLLVSIQNISDAI 635 >B1IMT2.1 B1IMT2_CLOBK Methyl-accepting chemotaxis protein Length = 569 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 116/341 (34%), Positives = 185/341 (54%), Gaps = 2/341 (0%) Query: 388 GDLSARAKVNAKGEIGVLAGGFNELIASQQNMXXXXXXXXXXXXXAVGNAETNVSALDGS 447 GDL+ KVN+K EI LA N+ I + +++ V + +TNV+ L+ Sbjct: 230 GDLTQEIKVNSKDEINDLAKSLNKFIQNIKDIIKTVNESADSIEIVVDSIKTNVTDLNDD 289 Query: 448 ISEISAITEELSAGMEQTAASMEELNAGTNEIEHAVSGIXXXXXXXXXXXXQIXXXXRAE 507 + E+SA TEELS+ M++TAAS EE++A + +IE A+ I +I RAE Sbjct: 290 VEEVSATTEELSSNMQETAASAEEMSATSQDIEKAIESIAQKSQEGATQAGEINK--RAE 347 Query: 508 RLKEGAGRSRRQADEMYGQSEEKLRKAIEQSRSTAQIHALTGAILDIAAQTSLLSLNASI 567 K+ S+++A E++ ++ +L KAIE S+ QI+ L+ +I++I +QT+LL+LNA+I Sbjct: 348 HTKDNVQASQKKAKEIFASTKVELEKAIESSKVVEQINVLSESIMEITSQTNLLALNAAI 407 Query: 568 XXXXXXXXXXXXXXXXXXIRKLAENSRETAAEIQEVTGAVVAAVENLVEGAENMLRFVDR 627 IRKLAE S++T EIQ +T V+ +V+NL + + N+L FV Sbjct: 408 EAARAGEAGKGFSVVADEIRKLAEQSKDTVTEIQNITVKVIESVKNLSDSSSNLLTFVST 467 Query: 628 QVLKDYDSMQETGRQYSEDAGYIHELVTDFSATSGQLLASIQSMHSAIXXXXXXXXXXXX 687 + DY +M QYSEDA ++ LVTDFS+TS +LLAS+Q + I Sbjct: 468 DMDNDYKTMLSVADQYSEDASFVDTLVTDFSSTSEELLASLQDVVKTIEGVAQAASEGAG 527 Query: 688 XXXXXXXXXXQIISKSGGIVAEMEEIKHSSEQLLHTVSKFK 728 ++ +KS ++ E + + ++ +L +SKFK Sbjct: 528 GTTDIACRILEVNNKSNDVLQEALKSEENANKLKKEISKFK 568 >B1KTZ7.1 B1KTZ7_CLOBM Methyl-accepting chemotaxis protein Length = 569 Score = 187 bits (474), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 115/341 (33%), Positives = 185/341 (54%), Gaps = 2/341 (0%) Query: 388 GDLSARAKVNAKGEIGVLAGGFNELIASQQNMXXXXXXXXXXXXXAVGNAETNVSALDGS 447 GDL+ KVN+K EI LA N+ I + +++ V + +TNV+ L+ Sbjct: 230 GDLTQEIKVNSKDEINDLAKSLNKFIQNIKDIIKTVNESADSIEIVVDSIKTNVTDLNDD 289 Query: 448 ISEISAITEELSAGMEQTAASMEELNAGTNEIEHAVSGIXXXXXXXXXXXXQIXXXXRAE 507 + E+SA TEELS+ M++TAAS EE++A + +IE A+ I +I RAE Sbjct: 290 VEEVSATTEELSSNMQETAASAEEMSATSQDIEKAIESIAQKSQEGATQAGEINK--RAE 347 Query: 508 RLKEGAGRSRRQADEMYGQSEEKLRKAIEQSRSTAQIHALTGAILDIAAQTSLLSLNASI 567 K+ S+++A E++ ++ +L +AIE S+ QI+ L+ +I++I +QT+LL+LNA+I Sbjct: 348 HTKDNVQASQKKAKEIFTSTKVELERAIESSKVVEQINVLSESIMEITSQTNLLALNAAI 407 Query: 568 XXXXXXXXXXXXXXXXXXIRKLAENSRETAAEIQEVTGAVVAAVENLVEGAENMLRFVDR 627 IRKLAE S++T EIQ +T V+ +V+NL + + N+L FV Sbjct: 408 EAARAGEAGKGFSVVADEIRKLAEQSKDTVTEIQNITVKVIESVKNLSDSSSNLLTFVST 467 Query: 628 QVLKDYDSMQETGRQYSEDAGYIHELVTDFSATSGQLLASIQSMHSAIXXXXXXXXXXXX 687 + DY +M QYSEDA ++ LVTDFS+TS +LLAS+Q + I Sbjct: 468 DMDNDYKTMLSVADQYSEDASFVDTLVTDFSSTSEELLASLQDVVKTIEGVAQAASEGAG 527 Query: 688 XXXXXXXXXXQIISKSGGIVAEMEEIKHSSEQLLHTVSKFK 728 ++ +KS ++ E + + ++ +L +SKFK Sbjct: 528 GTTDIACRILEVNNKSNDVLQEALKSEENANKLKKEISKFK 568 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.311 0.128 0.342 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,147,273,337 Number of extensions: 107516103 Number of successful extensions: 300742 Number of sequences better than 1.0e-05: 3132 Number of HSP's gapped: 299617 Number of HSP's successfully gapped: 3276 Length of query: 729 Length of database: 3,060,696,203 Length adjustment: 143 Effective length of query: 586 Effective length of database: 1,713,491,058 Effective search space: 1004105759988 Effective search space used: 1004105759988 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.2 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 42 (21.8 bits) S2: 135 (56.6 bits)