BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0442.0018.p (469 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein 315 6e-84 B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein 285 7e-75 C0Z4L6.1 C0Z4L6_BREBN Putative uncharacterized protein 218 1e-54 C0Z8G2.1 C0Z8G2_BREBN Putative DNA-binding protein 216 3e-54 C0Z6X4.1 C0Z6X4_BREBN Putative uncharacterized protein 216 4e-54 >B3KAJ8.1 B3KAJ8_9BACI Helix-turn-helix domain protein Length = 467 Score = 315 bits (807), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 162/432 (37%), Positives = 253/432 (58%), Gaps = 3/432 (0%) Query: 5 TTIRTELESFIEREALSFSQLGRLAGLNAGTVSSILKGNRIMGVDQLDRMTAVLGMPKGH 64 TTI TEL ++++E LS S + +N+GT+S +KG + + V LD +T + + +G+ Sbjct: 6 TTISTELLRYLKKENLSISSFANKSRINSGTLSRFIKGQQPLSVSNLDLVTEAMNLEEGY 65 Query: 65 FYEQYIQECMVEAVPNWRRVRPFLYRCAELDKLDCIRRILPLLLDNLTYSPXXXXXXXXX 124 FY Y ECM+++ PNWRR+ PF+ RCAEL+KL C+ +++ +++DNLTYS Sbjct: 66 FYSFYAYECMIQSSPNWRRLGPFIMRCAELNKLKCLDQLVGMMMDNLTYSSLLFDTAEAL 125 Query: 125 XXXXXXXXXXXXYESVALSERRQHSERLAFCQYRLFTLRLSDNQEDNLQCALQFEPFVDR 184 Y+ VA SE+ QH+ERL CQYR+FT L+ +QE NL C +QFE +V R Sbjct: 126 YHKGNREAALIIYKKVAESEKYQHAERLGMCQYRIFTCSLNSDQEHNLDCTIQFENYVKR 185 Query: 185 LDEIDQLDALRDLANTYRSLRRWDKVERIAEEMGRLAKIQLFMTPQPARAKREQHRKPQK 244 L + QLDAL+DLANT SLR+W+K + +EMGR++++ + AR + ++P K Sbjct: 186 LPDAVQLDALKDLANTLLSLRKWNKAKYYIQEMGRISRVLYSQKHKQARPS-SRLKRPAK 244 Query: 245 PMFVYLASSYLLRGSVCNARGDYEQEMQFTYAYQDLSWVKETDEDTLHWLKLYKGWAEAN 304 P+F Y+ S LL GS+ DY+Q + + Y+D SWVKE+DE + ++ WA+ N Sbjct: 245 PLFGYILYSDLLLGSIAAENDDYDQALYYVSCYEDQSWVKESDEAAEITKEQFREWAKGN 304 Query: 305 MYVSRLMRGDESVLADYVAYIEQNKDELLVGLLNITTAANLFDLNVDVILHYFDSEIKDY 364 Y+ LM+G+ VL Y+ Y+ ++E+L L I AAN++ +D L F+ I ++ Sbjct: 305 RYLYELMKGNTDVLEPYIDYLSSRENEILKALFKIIQAANMYHFEIDQYLDKFEKLILNH 364 Query: 365 MQIKHQEAVGVYTKQVVSEQHARFLYGVAQYYLRQGLYLMGFEYLLNSLSTSSLICNETR 424 + K VG YT+ ++ ++ A FL + +YY+ + G +Y+L SL S I + Sbjct: 365 L--KRGGGVGSYTEYIIDDRFANFLTDLGKYYIWKDNIQKGSKYILESLEISYKINSTAN 422 Query: 425 ILACVRLFEKYR 436 I+ C E R Sbjct: 423 IVRCCTTIEHIR 434 >B3KIV3.1 B3KIV3_9BACI Putative uncharacterized protein Length = 414 Score = 285 bits (729), Expect = 7e-75, Method: Compositional matrix adjust. Identities = 157/407 (38%), Positives = 228/407 (56%), Gaps = 9/407 (2%) Query: 46 MGVDQLDRMTAVLGMPKGHFYEQYIQECMVEAVPNWRRVRPFLYRCAELDKLDCIRRILP 105 M + QLDR+T +G+ +GHFY YI E + P+WRR+RPFL RCAELDKLDC+ R Sbjct: 1 MSMHQLDRITEGMGLEEGHFYNLYITESIFHTTPDWRRLRPFLKRCAELDKLDCLHRTAR 60 Query: 106 LLLDNLTYSPXXXXXXXXXXXXXXXXXXXXXYESVALSERRQHSERLAFCQYRLFTLRLS 165 + L+N+ Y P YE VA E+ Q+SERLA CQYRLF +RL Sbjct: 61 MTLENINYVPMLFEMAEELFIEEKYKAAALLYECVAECEKLQYSERLALCQYRLFLIRLG 120 Query: 166 DNQEDNLQCALQFEPFVDRLDEIDQLDALRDLANTYRSLRRWDKVERIAEEMGRLAKIQL 225 +NQE+NLQ A+ FEP++DRLDE+ QLDA L N SL+R DK+E +A+ M A+I Sbjct: 121 ENQEENLQAAVYFEPYIDRLDEMYQLDAYVKLINLNISLQRMDKIEALAKRMEHHARIHY 180 Query: 226 FMTPQPARAKREQHRKPQKPMFVYLASSYLLRGSVCNARGDYEQEMQFTYAYQDLSWVKE 285 Q R+ E P+KP+ Y+ SYL++ + RGDY+ + Y+ W+ Sbjct: 181 ----QQNRSWFEGSGNPRKPLIFYILYSYLIQAYLYQERGDYDNAFYYVSLYEKPDWITN 236 Query: 286 TDEDTLHWLKLYKGWAEANMYVSRLMRGDESVLADYVAYIEQNKDELLVGLLNITTAANL 345 + + +K WAEAN Y+ LM G L YV Y+E + E+ + L NI AAN Sbjct: 237 ASNEESLIMNQFKEWAEANRYMFSLMSGQPGALHQYVDYVESREHEIFLALCNIMVAANR 296 Query: 346 FDLNVDVILHYFDSEIKDYMQIKHQE-AVGVYTKQVVSEQHARFLYGVAQYYLRQGLYLM 404 + L+VD IL F K+++ + Q+ +G + QV ++ R L + YYL Sbjct: 297 YQLHVDPILDRF----KEHLHYRSQQNELGKISDQVTINRYTRLLAELGIYYLNAKQQNR 352 Query: 405 GFEYLLNSLSTSSLICNETRILACVRLFEKYRALASPEMQNRYQNLL 451 G Y+L+SL S I ++ +L C+ +FE++R ++ ++ NRY L+ Sbjct: 353 GLSYILDSLEYSIRIKSDNGMLRCMGIFEQFRHASTEDILNRYNELI 399 >C0Z4L6.1 C0Z4L6_BREBN Putative uncharacterized protein Length = 463 Score = 218 bits (554), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 136/452 (30%), Positives = 221/452 (48%), Gaps = 17/452 (3%) Query: 6 TIRTELESFIEREALSFSQLGRLAGLNAGTVSSILK--GNRIMGVDQLDRMTAVLGMPKG 63 ++R+E+E ++ + ++LG + G+N G +S I +R M + LD + G Sbjct: 18 SLRSEVEHHLKERGYTLTKLGEITGINQGVLSDIFNRTPSRAMTIGHLDALAIAFNQAPG 77 Query: 64 HFYEQYIQECMVEAVPNWRRVRPFLYRCAELDKLDCIRRILPLLLDNLTYSPXXXXXXXX 123 YE Y+ EC+VE + RV P+L RCAE+ + DCI I+P+LLDN Sbjct: 78 WLYELYVTECIVEGRVSRSRVVPYLIRCAEIGRQDCIELIVPILLDNQKNLSILFSVAEK 137 Query: 124 XXXXXXXXXXXXXYESVALSERRQHSERLAFCQYRLF-TLRLSDNQEDNLQCALQFEPFV 182 Y+ V SE+ H +R QYRLF ++ + E + ++F P+ Sbjct: 138 LFTNGKRQESIPFYQLVIESEKDSHGDRFVMSQYRLFRAVQGGADSEKKWKAVVRFHPYR 197 Query: 183 DRLDEIDQLDALRDLANTYRSLRRWDKVERIAEEMGRLAKIQLFMTPQPARAKREQHR-- 240 +RL E QLDAL LAN +L W +VER A+E+ LA + + R + + R Sbjct: 198 NRLPENYQLDALLQLANVCFTLHNWKEVERYADELRELATV--IYNEEVQRWEIDGVRGI 255 Query: 241 -KPQKPMFVYLASSYLLRGSVCNARGDYEQEMQFTYAYQDLSWVKETDEDTLHWLKLYKG 299 + ++ + VY +LL+G + YE+ + + AY +L W + D+ ++ ++G Sbjct: 256 LETERHLVVYYGQGFLLKGLALQLQERYEEAISYVQAYAELGWFEFRDDLAEMEIEKFRG 315 Query: 300 WAEANMYVSRLMRGDESVLADYVAYIEQNKDELLVGLLNITTAANLFDLNVDVILHYFDS 359 WA+AN Y L+ G +L++YV ++ N E+L G+ I AN F L+VD I+ F Sbjct: 316 WAKANNYTLNLLMGRTELLSEYVNHLANNPPEILAGMFTIMETANRFGLSVDDIVERFSK 375 Query: 360 EIKDYMQIKHQEAVGVYTKQVVSEQHARFLYGVAQYYLRQGLYLMGFEYLLNSLSTSSLI 419 EI + Y +H F Y +A Y L +G G L L+ +S + Sbjct: 376 EIACFQD---------YKDPFSLTRHLHFRYHLAIYQLDKGRVAEGITETLRCLALASKM 426 Query: 420 CNETRILACVRLFEKYRALASPEMQNRYQNLL 451 + + +CV +F KYR AS + + +QN+L Sbjct: 427 MEQEKFQSCVAMFWKYRHSASDQQIDEFQNIL 458 >C0Z8G2.1 C0Z8G2_BREBN Putative DNA-binding protein Length = 456 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 134/450 (29%), Positives = 226/450 (50%), Gaps = 13/450 (2%) Query: 6 TIRTELESFIEREALSFSQLGRLAGLNAGTVSSILKGN--RIMGVDQLDRMTAVLGMPKG 63 ++R+E+E + S+LG L G+N G++S IL GN R M + QLD + AV G G Sbjct: 11 SLRSEIERHRRECGYTLSKLGELTGINHGSLSEILNGNPPRAMTIGQLDALAAVFGREPG 70 Query: 64 HFYEQYIQECMVEAVPNWRRVRPFLYRCAELDKLDCIRRILPLLLDNLTYSPXXXXXXXX 123 YE Y +EC+ E + R+ P+L RCAE+ + DCI ++P LL+N Sbjct: 71 WLYELYTEECITEGRISRPRLIPYLIRCAEVGRQDCIDEVVPKLLENPKNISTLFAVAEQ 130 Query: 124 XXXXXXXXXXXXXYESVALSERRQHSERLAFCQYRLFTLRL-SDNQEDNLQCALQFEPFV 182 YE V +E+ +S + QYRLF + + N E+N + ++F+P+ Sbjct: 131 LYEEGKQKQSVPFYEYVIENEKDSYSNQFVMSQYRLFRVVVQGTNSEENWKAVIRFDPYR 190 Query: 183 DRLDEIDQLDALRDLANTYRSLRRWDKVERIAEEMGRLAKIQLFMTPQPARA-KREQHRK 241 RL E +QLDAL LAN ++ +W ++++ A+E+ LA I + R+ K + Sbjct: 191 RRLPENNQLDALLQLANVCYTIHKWREMDKYADELRELATIIYEDELRRRRSNKASEMLS 250 Query: 242 PQKPMFVYLASSYLLRGSVCNARGDYEQEMQFTYAYQDLSWVKETDEDTLHWLKLYKGWA 301 ++ + VY ++L++ + YE+ ++ Y DLSW + DE ++ ++ WA Sbjct: 251 TERHLVVYYGQAFLIKSIALEKQELYEEAKRYVDGYADLSWFEFLDEIGQIEVQKFRSWA 310 Query: 302 EANMYVSRLMRGDESVLADYVAYIEQNKDELLVGLLNITTAANLFDLNVDVILHYFDSEI 361 AN+Y ++ G+ V+ DY+ ++ + E+L GL+ I +AAN + ++D I F I Sbjct: 311 TANLYTLNILMGNSDVIPDYIHFLSDHPKEVLSGLVTIVSAANQYGFSIDSIFEQFAEHI 370 Query: 362 KDYMQIKHQEAVGVYTKQVVSEQHARFLYGVAQYYLRQGLYLMGFEYLLNSLSTSSLICN 421 + Q+A+G+ +H +F +A Y ++G Y G L LS S + + Sbjct: 371 DRFED--RQDAIGM-------SEHMQFRNEMAIYLFKRGKYAEGLNETLRCLSLSDTMKD 421 Query: 422 ETRILACVRLFEKYRALASPEMQNRYQNLL 451 C LF + AS E + +YQ +L Sbjct: 422 YDSFKKCTTLFWMHLQYASDEQKGKYQTIL 451 >C0Z6X4.1 C0Z6X4_BREBN Putative uncharacterized protein Length = 455 Score = 216 bits (550), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 135/452 (29%), Positives = 220/452 (48%), Gaps = 17/452 (3%) Query: 6 TIRTELESFIEREALSFSQLGRLAGLNAGTVSSILK--GNRIMGVDQLDRMTAVLGMPKG 63 ++R+E+E ++ + ++LG + G+N G +S I +R M + LD + G Sbjct: 10 SLRSEVEHHLKERGYTLTKLGEITGINQGVLSDIFNRTPSRAMTIGHLDALAVAFNQAPG 69 Query: 64 HFYEQYIQECMVEAVPNWRRVRPFLYRCAELDKLDCIRRILPLLLDNLTYSPXXXXXXXX 123 Y+ Y+ EC+VE + RV P+L RCAE+ + DCI I+P+LLDN Sbjct: 70 WLYDLYVTECIVEGKVSRSRVVPYLVRCAEIGRQDCIELIVPILLDNQKNLSILFSVAEK 129 Query: 124 XXXXXXXXXXXXXYESVALSERRQHSERLAFCQYRLF-TLRLSDNQEDNLQCALQFEPFV 182 Y+ V SE+ H +R QYRLF ++ + E + + F P+ Sbjct: 130 LFTNGKRQESIPFYQLVIESEKDSHCDRFVMSQYRLFRAVQGGADSEKKWKAVICFHPYR 189 Query: 183 DRLDEIDQLDALRDLANTYRSLRRWDKVERIAEEMGRLAKIQLFMTPQPARAKREQHR-- 240 +RL E QLDAL LAN +L W +VER A+E+ LA + + R + + R Sbjct: 190 NRLPENYQLDALLQLANVCFTLHNWKEVERYADELKELATV--IYNEEIQRWEIDGVRGI 247 Query: 241 -KPQKPMFVYLASSYLLRGSVCNARGDYEQEMQFTYAYQDLSWVKETDEDTLHWLKLYKG 299 + ++ + VY +LL+G + YE+ + + AY +L W + D+ ++ ++G Sbjct: 248 LETERHLVVYYGQGFLLKGLALQLQERYEEAISYVQAYAELGWFEFRDDLAEMEIEKFRG 307 Query: 300 WAEANMYVSRLMRGDESVLADYVAYIEQNKDELLVGLLNITTAANLFDLNVDVILHYFDS 359 WA+AN Y L+ G +L++YV ++ N E+L G+ I AN F L+VD I+ F Sbjct: 308 WAKANNYTLNLLMGRTELLSEYVNHLANNPPEILAGMFTIMETANRFGLSVDDIVERFSK 367 Query: 360 EIKDYMQIKHQEAVGVYTKQVVSEQHARFLYGVAQYYLRQGLYLMGFEYLLNSLSTSSLI 419 EI + Y +H F Y +A Y L +G G L L+ +S + Sbjct: 368 EIACFQD---------YKDPFSLTRHLHFRYHLAIYQLDKGRVAEGITETLRCLALASKM 418 Query: 420 CNETRILACVRLFEKYRALASPEMQNRYQNLL 451 + + +CV +F KYR AS + + +QN+L Sbjct: 419 MEQEKFQSCVAMFWKYRHSASDQQIDEFQNIL 450 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.323 0.137 0.403 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,412,074,933 Number of extensions: 93561121 Number of successful extensions: 218994 Number of sequences better than 1.0e-05: 11 Number of HSP's gapped: 218955 Number of HSP's successfully gapped: 11 Length of query: 469 Length of database: 3,060,696,203 Length adjustment: 139 Effective length of query: 330 Effective length of database: 1,751,175,118 Effective search space: 577887788940 Effective search space used: 577887788940 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 133 (55.8 bits)