BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0442.0013.p (421 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA84.1 B3KA84_9BACI Phosphoribosylamine--glycine ligase EC=6.3... 592 e-167 B1D8Z0.1 B1D8Z0_9BACL Phosphoribosylamine--glycine ligase EC=6.3... 559 e-157 A7VJ26.1 A7VJ26_9CLOT Putative uncharacterized protein 463 e-128 B0MGP7.1 B0MGP7_9FIRM Putative uncharacterized protein 458 e-127 A8STW4.1 A8STW4_9FIRM Putative uncharacterized protein 453 e-125 >B3KA84.1 B3KA84_9BACI Phosphoribosylamine--glycine ligase EC=6.3.4.13 Length = 422 Score = 592 bits (1525), Expect = e-167, Method: Compositional matrix adjust. Identities = 301/421 (71%), Positives = 344/421 (81%), Gaps = 1/421 (0%) Query: 1 MDILVVGGGGREHAIIWSLSRSPKAGKIYCAPGNAGIAQLAECVPIGVFEFDKLTAFAKE 60 MDILV+GGGGREHAI+W+L++SPKAG IYCAPGNAGI QLAE VPI V EFDKL AFA E Sbjct: 1 MDILVIGGGGREHAIVWALAKSPKAGTIYCAPGNAGIGQLAENVPIAVSEFDKLAAFAVE 60 Query: 61 KSIDYVVIGPDDPLAAGIVDAFEAHHIPVFGPRKNAAEIEGSKTFMKDLLHKYSIPTAAY 120 K + +V+GPDDPLA GIVDAF+A IPVFGPRKNAAEIEGSKTFMKDLL+KYSIPTAAY Sbjct: 61 KQVGLIVVGPDDPLAEGIVDAFDATGIPVFGPRKNAAEIEGSKTFMKDLLNKYSIPTAAY 120 Query: 121 EKFSDYEAALSYLRGQGLPVVIKADGLAAGKGVTVAYSREEAELALRDIMVTKVFGEAGA 180 KF +YE AL+YLR QG P+V+KADGLAAGKGVTVA + EEAE AL DIM +KVFG+AG+ Sbjct: 121 AKFDNYEEALAYLRQQGAPIVVKADGLAAGKGVTVARTIEEAEQALSDIMQSKVFGDAGS 180 Query: 181 QVVIEEFLAGQEMSILAFVDGETVRPMAAAQDHKPVFDGDKGPNTGGMGTYSPLPHIDEA 240 +VVIEEFL GQEMSILAFVDGETV+PM+AAQDHKP +DGD+GPNTGGMGTYSPLPHI + Sbjct: 181 RVVIEEFLEGQEMSILAFVDGETVKPMSAAQDHKPAYDGDQGPNTGGMGTYSPLPHIQPS 240 Query: 241 IIQEAVETIIKPTARAMVAEGRPFSGVLFAGLMISPDGKPKTIEFNARFGDPETQVVLPR 300 II+EA+ETIIKPTA+AMVAEGRPF GVLFAGLMI+PDG+PKTIEFNARFGDPE QVVLPR Sbjct: 241 IIEEAIETIIKPTAKAMVAEGRPFRGVLFAGLMITPDGRPKTIEFNARFGDPEAQVVLPR 300 Query: 301 LKSDLLEIFLAVTEGRLXXXXXXXXXXXXVCVVLASEGYPGPYPKGVPIAGLENSPN-DL 359 LK+DLL++FLA G L VCV+LAS GYP YPKG+ I GL+N + + Sbjct: 301 LKTDLLDVFLAAVNGTLADLELEWGDEAAVCVILASGGYPASYPKGIAITGLDNEQDGTI 360 Query: 360 VFHAGTERTEEGTWVTNGGRVLGVVGMGXXXXXXXXXXXXXXXKISFPGMHSRSDIAMKA 419 VFHAGT R +GTW TNGGRVLGVVG+G I+F G +R+DIA+KA Sbjct: 361 VFHAGTSRDADGTWRTNGGRVLGVVGLGADIAAARAKAYERAEAIAFEGKFNRTDIALKA 420 Query: 420 L 420 L Sbjct: 421 L 421 >B1D8Z0.1 B1D8Z0_9BACL Phosphoribosylamine--glycine ligase EC=6.3.4.13 Length = 422 Score = 559 bits (1440), Expect = e-157, Method: Compositional matrix adjust. Identities = 289/422 (68%), Positives = 333/422 (78%), Gaps = 4/422 (0%) Query: 1 MDILVVGGGGREHAIIWSLSRSPKAGKIYCAPGNAGIAQLAECVPIGVFEFDKLTAFAKE 60 M ILVVGGGGREHA++W+L +S K +++CAPGNAGIAQ+A+CVPI V +FD+L FAK+ Sbjct: 1 MRILVVGGGGREHAVVWALKKSEKVKEVFCAPGNAGIAQIADCVPIAVNQFDELVKFAKD 60 Query: 61 KSIDYVVIGPDDPLAAGIVDAFEAHHIPVFGPRKNAAEIEGSKTFMKDLLHKYSIPTAAY 120 +ID V IGPDDPLAAGIVDAFEAH+IPV+GP K AAEIEGSK FMKDLL KY IPTA Y Sbjct: 61 AAIDLVFIGPDDPLAAGIVDAFEAHNIPVYGPNKAAAEIEGSKIFMKDLLRKYDIPTAKY 120 Query: 121 EKFSDYEAALSYLRGQGLPVVIKADGLAAGKGVTVAYSREEAELALRDIMVTKVFGEAGA 180 E F+DYE AL+YLR Q +P+VIKADGLAAGKGVTVAYS EEAE AL++ MV KVFGEAG Sbjct: 121 ETFTDYETALTYLREQSVPIVIKADGLAAGKGVTVAYSMEEAEKALKEAMVDKVFGEAGN 180 Query: 181 QVVIEEFLAGQEMSILAFVDGETVRPMAAAQDHKPVFDGDKGPNTGGMGTYSPLPHIDEA 240 Q+VIEEFL GQEMSILAFVDGETV+ M AQDHKPVFD DKGPNTGGMGTY+PLPHID+A Sbjct: 181 QIVIEEFLEGQEMSILAFVDGETVKAMVPAQDHKPVFDNDKGPNTGGMGTYTPLPHIDQA 240 Query: 241 IIQEAVETIIKPTARAMVAEGRPFSGVLFAGLMISPDGKPKTIEFNARFGDPETQVVLPR 300 II+E++E IIKPTA+AMV+EGRPF GVLFAGLMI+ DG PKTIEFNAR GDPETQVVLPR Sbjct: 241 IIEESIENIIKPTAKAMVSEGRPFRGVLFAGLMITKDG-PKTIEFNARMGDPETQVVLPR 299 Query: 301 LKSDLLEIFLAVTEGRLXXXXXXXXXXXXVCVVLASEGYPGPYPKGVPIAGLE--NSPND 358 LK++L+++ LA GRL VCV++ASEGYP YPKG I GL+ + Sbjct: 300 LKTELVDVVLASLNGRLDQLELEWSDEAAVCVIVASEGYPASYPKGREITGLDAAEAQGA 359 Query: 359 LVFHAGTERTEEGTWVTNGGRVLGVVGMGXXXXXXXXXXXXXXXKISFPGMHSRSDIAMK 418 LVFHAGT ++G VT+GGRVLGVVG G I F GMHSR+DIA K Sbjct: 360 LVFHAGTAE-KDGKIVTSGGRVLGVVGRGRDIAEARARAYEAVSVIHFDGMHSRTDIAAK 418 Query: 419 AL 420 AL Sbjct: 419 AL 420 >A7VJ26.1 A7VJ26_9CLOT Putative uncharacterized protein Length = 423 Score = 463 bits (1191), Expect = e-128, Method: Compositional matrix adjust. Identities = 238/418 (56%), Positives = 288/418 (68%), Gaps = 5/418 (1%) Query: 1 MDILVVGGGGREHAIIWSLSRSPKAGKIYCAPGNAGIAQLAECVPIGVFEFDKLTAFAKE 60 M ILVVGGGGREHAII S+++S K KIYCAPGNAGIA+LAECV IGV EFDKL FAK+ Sbjct: 1 MKILVVGGGGREHAIITSIAKSSKVTKIYCAPGNAGIAELAECVDIGVMEFDKLVDFAKK 60 Query: 61 KSIDYVVIGPDDPLAAGIVDAFEAHHIPVFGPRKNAAEIEGSKTFMKDLLHKYSIPTAAY 120 ++ID V+ PDDPL AG VD FEA I FGPR NAA IEGSK F KDL+ KY+IPTAAY Sbjct: 61 EAIDLAVVAPDDPLVAGAVDTFEAAGIRAFGPRANAAIIEGSKAFSKDLMKKYNIPTAAY 120 Query: 121 EKFSDYEAALSYLRGQGLPVVIKADGLAAGKGVTVAYSREEAELALRDIMVTKVFGEAGA 180 E F+D E+AL+YL P+V+KADGLA GKGV + EEA+ +++IM+ K FG AG Sbjct: 121 ENFTDAESALAYLETASFPIVLKADGLALGKGVLICKDLEEAKAGVKEIMLDKHFGNAGN 180 Query: 181 QVVIEEFLAGQEMSILAFVDGETVRPMAAAQDHKPVFDGDKGPNTGGMGTYSPLPHIDEA 240 +VIEEF+ G+E+S+LAF DG T++PM +AQDHK DGD+G NTGGMGT+SP P + Sbjct: 181 TMVIEEFMTGREVSVLAFCDGTTIKPMTSAQDHKRAQDGDQGLNTGGMGTFSPSPFYTDE 240 Query: 241 IIQEAVETIIKPTARAMVAEGRPFSGVLFAGLMISPDGKPKTIEFNARFGDPETQVVLPR 300 I +E I KPT AM AEGR F GVLF GLMI+P G K +E+NARFGDPE QVVLPR Sbjct: 241 IADYCMENIYKPTMAAMKAEGREFKGVLFCGLMITPQG-VKVLEYNARFGDPEAQVVLPR 299 Query: 301 LKSDLLEIFLAVTEGRLXXXXXXXXXXXXVCVVLASEGYPGPYPKGVPIAGLENSPND-- 358 +K+D++++F A +G L VCVVLAS+GYP Y KG PI+GLE + Sbjct: 300 MKNDIIDVFEACIDGTLDQVELEFEDNAAVCVVLASDGYPVSYKKGYPISGLETFKDKDG 359 Query: 359 -LVFHAGTERTEEGTWVTNGGRVLGVVGMGXXXXXXXXXXXXXXXKISFPGMHSRSDI 415 VFHAGT + E+G VTNGGRVLGV G I+F + R DI Sbjct: 360 YYVFHAGT-KFEDGKVVTNGGRVLGVTATGKDLHEARANAYKATEWITFENKYMRHDI 416 >B0MGP7.1 B0MGP7_9FIRM Putative uncharacterized protein Length = 423 Score = 458 bits (1179), Expect = e-127, Method: Compositional matrix adjust. Identities = 229/418 (54%), Positives = 291/418 (69%), Gaps = 5/418 (1%) Query: 1 MDILVVGGGGREHAIIWSLSRSPKAGKIYCAPGNAGIAQLAECVPIGVFEFDKLTAFAKE 60 MDIL+VG GGREHAI W+ ++SPKA KIYCAPGNAGIA+ AECV I EFDKL AFAKE Sbjct: 1 MDILIVGSGGREHAIAWAAAKSPKADKIYCAPGNAGIAEFAECVDIKAMEFDKLVAFAKE 60 Query: 61 KSIDYVVIGPDDPLAAGIVDAFEAHHIPVFGPRKNAAEIEGSKTFMKDLLHKYSIPTAAY 120 K I +IG DDPL G+VDAFEA + VFGPRKNAA IEGSK F KDL+ KY+IPTA+Y Sbjct: 61 KQIGLTIIGMDDPLVGGVVDAFEAEGLRVFGPRKNAAIIEGSKAFSKDLMKKYNIPTASY 120 Query: 121 EKFSDYEAALSYLRGQGLPVVIKADGLAAGKGVTVAYSREEAELALRDIMVTKVFGEAGA 180 E F+D E AL+YL +P+V+KADGLA GKGV + + EEA+ ++ +M+ K FG+AG Sbjct: 121 ENFTDPEQALAYLETVKMPIVLKADGLALGKGVLICETLEEAKAGVKTLMLDKQFGDAGN 180 Query: 181 QVVIEEFLAGQEMSILAFVDGETVRPMAAAQDHKPVFDGDKGPNTGGMGTYSPLPHIDEA 240 ++VIEEF+ G+E+S+LAF DG+T+R M +AQDHK DGDKG NTGGMGT+SP P + Sbjct: 181 EIVIEEFMTGREVSVLAFCDGKTIRCMTSAQDHKRAKDGDKGLNTGGMGTFSPSPFYTKE 240 Query: 241 IIQEAVETIIKPTARAMVAEGRPFSGVLFAGLMISPDGKPKTIEFNARFGDPETQVVLPR 300 + + + + +PT AM +EGRPF+G+LF GLM++ DG PK +E+NARFGDPE QVVLPR Sbjct: 241 VEEFCEKYVYQPTMDAMASEGRPFTGILFTGLMLTEDG-PKVLEYNARFGDPEAQVVLPR 299 Query: 301 LKSDLLEIFLAVTEGRLXXXXXXXXXXXXVCVVLASEGYPGPYPKGVPIAGLE---NSPN 357 +K+D++E+ A +G+L VCVVLAS+GYP Y KG I GL+ + + Sbjct: 300 MKNDMIEVMEACIDGKLSDVTLEFEENAAVCVVLASDGYPEKYEKGFEIKGLDKFKDQDD 359 Query: 358 DLVFHAGTERTEEGTWVTNGGRVLGVVGMGXXXXXXXXXXXXXXXKISFPGMHSRSDI 415 VFHAGT + + VTNGGRVLGVV G I F + R+DI Sbjct: 360 YYVFHAGT-KFDGDKIVTNGGRVLGVVAKGGDLKAARKNAYEAAEWIDFANKYKRNDI 416 >A8STW4.1 A8STW4_9FIRM Putative uncharacterized protein Length = 423 Score = 453 bits (1165), Expect = e-125, Method: Compositional matrix adjust. Identities = 234/418 (55%), Positives = 284/418 (67%), Gaps = 5/418 (1%) Query: 1 MDILVVGGGGREHAIIWSLSRSPKAGKIYCAPGNAGIAQLAECVPIGVFEFDKLTAFAKE 60 M +LVVG GGREHAI+ S+S+S K KIYCAPGNAGIA LAECV IGV +FDKL AFAKE Sbjct: 1 MKVLVVGSGGREHAIVTSISKSDKVSKIYCAPGNAGIAALAECVDIGVMDFDKLVAFAKE 60 Query: 61 KSIDYVVIGPDDPLAAGIVDAFEAHHIPVFGPRKNAAEIEGSKTFMKDLLHKYSIPTAAY 120 K ID VV+ PDDPL AG VDAFEA I FGPR NAA IEGSK F KDL+ KY IPTAAY Sbjct: 61 KEIDLVVVAPDDPLVAGAVDAFEAAGIRAFGPRANAAIIEGSKAFSKDLMKKYGIPTAAY 120 Query: 121 EKFSDYEAALSYLRGQGLPVVIKADGLAAGKGVTVAYSREEAELALRDIMVTKVFGEAGA 180 E F+D ++A+ YL P+V+KADGLA GKGV + EEA+ +++IM+ K FG AG Sbjct: 121 ENFTDPDSAIKYLETATFPIVLKADGLALGKGVLICNDLEEAKAGVKEIMLDKHFGSAGN 180 Query: 181 QVVIEEFLAGQEMSILAFVDGETVRPMAAAQDHKPVFDGDKGPNTGGMGTYSPLPHIDEA 240 +VIEEF+ G+E+S+L F DG T++PM +AQDHK DGD+G NTGGMGT+SP P + Sbjct: 181 TMVIEEFMTGREVSVLCFCDGTTIKPMTSAQDHKRAKDGDQGLNTGGMGTFSPSPFYTKD 240 Query: 241 IIQEAVETIIKPTARAMVAEGRPFSGVLFAGLMISPDGKPKTIEFNARFGDPETQVVLPR 300 I + +E I KPT AM AEGR F GVLF GLM++P+G K +E+NARFGDPE QVVLPR Sbjct: 241 IDEYCMENIYKPTMAAMKAEGREFKGVLFCGLMMTPNG-VKVLEYNARFGDPEAQVVLPR 299 Query: 301 LKSDLLEIFLAVTEGRLXXXXXXXXXXXXVCVVLASEGYPGPYPKGVPIAGLEN---SPN 357 +K+D++++ A +G L VCVVLAS+GYP Y KG PI GLEN + Sbjct: 300 MKNDIIDVMEACIDGTLDKIDLQFEDNAAVCVVLASDGYPVSYKKGYPIHGLENFDGKDD 359 Query: 358 DLVFHAGTERTEEGTWVTNGGRVLGVVGMGXXXXXXXXXXXXXXXKISFPGMHSRSDI 415 VFHAGT + + VTNGGRVLGV G I+F + R DI Sbjct: 360 YFVFHAGT-KFDGDEIVTNGGRVLGVTAKGKDLFEARANAYAATEWITFDNKYMRHDI 416 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.138 0.405 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,515,403,903 Number of extensions: 108606565 Number of successful extensions: 257466 Number of sequences better than 1.0e-05: 1698 Number of HSP's gapped: 252709 Number of HSP's successfully gapped: 1701 Length of query: 421 Length of database: 3,060,696,203 Length adjustment: 138 Effective length of query: 283 Effective length of database: 1,760,596,133 Effective search space: 498248705639 Effective search space used: 498248705639 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)