BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0442.0010.p (204 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA82.1 B3KA82_9BACI Phosphoribosylglycinamide formyltransferase 252 1e-65 B1D8Y8.1 B1D8Y8_9BACL Phosphoribosylglycinamide formyltransferase 232 1e-59 C0ZKC9.1 C0ZKC9_BREBN Phosphoribosylglycinamide formyltransferas... 229 9e-59 Q5L3C9.1 Q5L3C9_GEOKA Phosphoribosylglycinamide formyltransferas... 220 6e-56 C1PAX9.1 C1PAX9_BACCO Phosphoribosylglycinamide formyltransferase 217 4e-55 >B3KA82.1 B3KA82_9BACI Phosphoribosylglycinamide formyltransferase Length = 203 Score = 252 bits (644), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 122/204 (59%), Positives = 158/204 (77%), Gaps = 1/204 (0%) Query: 1 MQWSRIAVFASGQGSNFAALAEAERAGQLGGGRIELLVSDRPEAPVAKRAEEAGIPALML 60 M+ R+AVFASG+GSNF AL +A+++G +GG I +LV D+P+APV + A+ A + Sbjct: 1 MRAFRMAVFASGRGSNFQALVDAQQSGAMGG-EISILVCDKPQAPVVELAKAANVDVFAF 59 Query: 61 RPKDFASRELYEAEIVAELQRRDIGLIVLAGYMRLITPVLLTPYAGRTVNIHPSLLPAFA 120 +PK++AS+E YE EI AELQ+R + LIVLAGYMRL++P + Y GR +NIHPSLLPAF Sbjct: 60 QPKEYASKEDYEREIAAELQQRGVELIVLAGYMRLLSPSFVEFYNGRIINIHPSLLPAFP 119 Query: 121 GKDAIDQALDYGVKLTGVTVHFVDGGMDTGPVIAQRSVAVEPGDTVESLAERIHQVEYEL 180 GKDAI QAL YGVK+TGVTVHFVDGGMDTGPVIAQ++V ++ GDT E+LAERIH VE +L Sbjct: 120 GKDAIGQALAYGVKMTGVTVHFVDGGMDTGPVIAQKAVEIKDGDTAETLAERIHAVEQKL 179 Query: 181 YPEVVRALAEGKVELDGRKTVIRE 204 Y EVV A+G++ L+GR I + Sbjct: 180 YSEVVSWFAQGRISLNGRNVTIAQ 203 >B1D8Y8.1 B1D8Y8_9BACL Phosphoribosylglycinamide formyltransferase Length = 203 Score = 232 bits (592), Expect = 1e-59, Method: Compositional matrix adjust. Identities = 114/199 (57%), Positives = 151/199 (75%), Gaps = 1/199 (0%) Query: 5 RIAVFASGQGSNFAALAEAERAGQLGGGRIELLVSDRPEAPVAKRAEEAGIPALMLRPKD 64 RIAVFASGQG+NF AL +A + G+L IELLV D+P APV +RA +AG+ PK+ Sbjct: 5 RIAVFASGQGTNFQALTDAVQQGRLDAS-IELLVCDKPSAPVVERARKAGVDTFAFVPKE 63 Query: 65 FASRELYEAEIVAELQRRDIGLIVLAGYMRLITPVLLTPYAGRTVNIHPSLLPAFAGKDA 124 +ASR+ YE EI+ EL+R I L+VLAGYMR+IT VL+ PY GR +NIHP+LLP+F G + Sbjct: 64 YASRQAYETEILEELRRSGIELVVLAGYMRIITSVLVEPYYGRMINIHPALLPSFPGVNG 123 Query: 125 IDQALDYGVKLTGVTVHFVDGGMDTGPVIAQRSVAVEPGDTVESLAERIHQVEYELYPEV 184 I QAL+YGVK+TGVTVH+VDGGMD+GP+IAQ V V+ G+T ++L ERIH E +L P+V Sbjct: 124 IGQALEYGVKVTGVTVHYVDGGMDSGPIIAQSVVEVQNGETEDTLGERIHAAEQQLLPQV 183 Query: 185 VRALAEGKVELDGRKTVIR 203 V+ +AEG+V L+ R ++ Sbjct: 184 VQWIAEGRVTLEERIVTVK 202 >C0ZKC9.1 C0ZKC9_BREBN Phosphoribosylglycinamide formyltransferase EC=2.1.2.2 Length = 201 Score = 229 bits (585), Expect = 9e-59, Method: Compositional matrix adjust. Identities = 111/194 (57%), Positives = 148/194 (76%) Query: 5 RIAVFASGQGSNFAALAEAERAGQLGGGRIELLVSDRPEAPVAKRAEEAGIPALMLRPKD 64 ++A+FASG GSNF A+ +A + G+L G + LLV D+P A V +RAE GI A + +PK+ Sbjct: 3 KLAIFASGSGSNFEAIVQAVQDGKLAGVEVALLVCDKPGAKVLERAERLGIDAFVFQPKE 62 Query: 65 FASRELYEAEIVAELQRRDIGLIVLAGYMRLITPVLLTPYAGRTVNIHPSLLPAFAGKDA 124 +A + +E EIVA+LQ+R+I L+VLAGYMRL+ LL+ Y G+ +N+HPSLLPAF GKDA Sbjct: 63 YADKASFEQEIVAQLQKREISLVVLAGYMRLVGDTLLSSYEGKIINLHPSLLPAFPGKDA 122 Query: 125 IDQALDYGVKLTGVTVHFVDGGMDTGPVIAQRSVAVEPGDTVESLAERIHQVEYELYPEV 184 + QAL YGVK+TGVTVH VD G+DTGP+IAQ VAV+ DT E+LA RIH VE+EL +V Sbjct: 123 VGQALAYGVKITGVTVHLVDAGLDTGPIIAQIPVAVQEADTAETLAARIHAVEHELLVKV 182 Query: 185 VRALAEGKVELDGR 198 + LAE +V+L+GR Sbjct: 183 IGYLAEERVKLEGR 196 >Q5L3C9.1 Q5L3C9_GEOKA Phosphoribosylglycinamide formyltransferase EC=2.1.2.2 Length = 210 Score = 220 bits (561), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 116/205 (56%), Positives = 143/205 (69%), Gaps = 7/205 (3%) Query: 4 SRIAVFASGQGSNFAALAEAERAGQLGGGRIELLVSDRPEAPVAKRAEEAGIPALMLRPK 63 R+AVFASG G+NF A+ +A + G L R+ LLV DRP A V +RA +PA + PK Sbjct: 2 KRLAVFASGSGTNFQAIVDAAKRGDLPA-RVALLVCDRPGAKVIERAARENVPAFVFSPK 60 Query: 64 DFASRELYEAEIVAELQRRDIGLIVLAGYMRLITPVLLTPYAGRTVNIHPSLLPAFAGKD 123 D+ S+ +E+EI+ EL+ R I I LAGYMRLI P LL+ Y G+ VNIHPSLLPAF GKD Sbjct: 61 DYPSKAAFESEILRELKGRQIDWIALAGYMRLIGPTLLSAYEGKIVNIHPSLLPAFPGKD 120 Query: 124 AIDQALDYGVKLTGVTVHFVDGGMDTGPVIAQRSVAVEPGDTVESLAERIHQVEYELYPE 183 AI QA GV TGVTVH+VD GMDTGPVIAQR V + PG+ +E+L ERIHQVE+ELYP Sbjct: 121 AIGQAYRAGVSETGVTVHYVDEGMDTGPVIAQRVVPIVPGEPIEALEERIHQVEHELYPT 180 Query: 184 VVRAL------AEGKVELDGRKTVI 202 V+R L E ++E DG +T I Sbjct: 181 VLRMLLGEKEQQEERIENDGSETSI 205 >C1PAX9.1 C1PAX9_BACCO Phosphoribosylglycinamide formyltransferase Length = 197 Score = 217 bits (553), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 107/192 (55%), Positives = 139/192 (72%), Gaps = 1/192 (0%) Query: 5 RIAVFASGQGSNFAALAEAERAGQLGGGRIELLVSDRPEAPVAKRAEEAGIPALMLRPKD 64 ++AVFASG G+NF A+ +A + G+L IELLV DR +A V +RA + IPA + PK Sbjct: 3 KMAVFASGSGTNFQAICDAVKKGELDAA-IELLVCDREDAYVIRRAAQENIPAFVFNPKT 61 Query: 65 FASRELYEAEIVAELQRRDIGLIVLAGYMRLITPVLLTPYAGRTVNIHPSLLPAFAGKDA 124 + + YE EI+A+LQ++ I I+LAGYMRLI PVLL Y + +NIHPSLLPA GK+A Sbjct: 62 YPDKRAYEQEILAQLQKKQIEWIILAGYMRLIGPVLLNQYPRKIINIHPSLLPALPGKNA 121 Query: 125 IDQALDYGVKLTGVTVHFVDGGMDTGPVIAQRSVAVEPGDTVESLAERIHQVEYELYPEV 184 I QAL GVK+TGVTVH+VD GMDTGP+IAQ +V V GDT E+LA RIHQ E+ LYP+V Sbjct: 122 IGQALAAGVKITGVTVHYVDEGMDTGPIIAQAAVPVLDGDTYETLAARIHQTEHMLYPDV 181 Query: 185 VRALAEGKVELD 196 +R L E + ++ Sbjct: 182 LRKLVENQTNME 193 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.137 0.385 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,200,694,629 Number of extensions: 49913670 Number of successful extensions: 156332 Number of sequences better than 1.0e-05: 3915 Number of HSP's gapped: 154690 Number of HSP's successfully gapped: 3915 Length of query: 204 Length of database: 3,060,696,203 Length adjustment: 129 Effective length of query: 75 Effective length of database: 1,845,385,268 Effective search space: 138403895100 Effective search space used: 138403895100 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 128 (53.9 bits)