BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0442.0008.p (501 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value B3KA80.1 B3KA80_9BACI Amidophosphoribosyltransferase 868 0.0 B1D8Y6.1 B1D8Y6_9BACL Amidophosphoribosyltransferase 773 0.0 C0ZKC7.1 C0ZKC7_BREBN Amidophosphoribosyltransferase EC=2.4.2.14 602 e-170 A7GKH9.1 A7GKH9_BACCN Amidophosphoribosyltransferase 595 e-168 B7H4T7.1 B7H4T7_BACC4 Amidophosphoribosyltransferase EC=2.4.2.14 595 e-168 >B3KA80.1 B3KA80_9BACI Amidophosphoribosyltransferase Length = 492 Score = 868 bits (2243), Expect = 0.0, Method: Compositional matrix adjust. Identities = 411/486 (84%), Positives = 453/486 (93%), Gaps = 3/486 (0%) Query: 16 LWTGDFYNEGTGSGDIFDTLKEECGVFGVFGHPEAASMSYYGLHALQHRGEESAGICVAD 75 LWTGD+YNEGTG DIFDTLKEECGVFGVFGHP+AAS+SYYGLHALQHRGEESAGICVAD Sbjct: 10 LWTGDYYNEGTGQSDIFDTLKEECGVFGVFGHPDAASLSYYGLHALQHRGEESAGICVAD 69 Query: 76 GRDFHYHRGMGLVKEVFDKDKIASLVGNMSIGHVRYSTSGDSRLTNAQPLVFKYRDGDLA 135 G +F+YHRGMGLVKEVFDKDK+ SL G+MSIGHVRYSTSGDSRLTNAQPLVFKYR+G+LA Sbjct: 70 GENFNYHRGMGLVKEVFDKDKLESLQGSMSIGHVRYSTSGDSRLTNAQPLVFKYREGNLA 129 Query: 136 IATNGNIVNEPLIRKQLEQSGSIFQTTSDTEVLAHLIARSQKEFVEATKDALQQLVGGFA 195 IATNGNIVNEP +R++LE GSIFQTTSDTEV+AHLIARS K+FVEA KDALQ+LVGGFA Sbjct: 130 IATNGNIVNEPKLRRELEMEGSIFQTTSDTEVIAHLIARSPKDFVEAAKDALQRLVGGFA 189 Query: 196 FLLMTNDKLIVASDTHGLRPLVMGRVGEAYVFASESCALEVIGAQFVRDIEPGELLVLDQ 255 FLLMTNDKL+VASD +GLRPL MGR+G+AY+F SE+CALEVIGA+ +RD+ PGELL+LD+ Sbjct: 190 FLLMTNDKLLVASDPNGLRPLTMGRLGDAYIFTSETCALEVIGAEAIRDVAPGELLILDR 249 Query: 256 NGFREDRFAXXXXPQRKALCAMEYIYFARPDSDLNGSNLHAARKRMGSRMALEAFVDADI 315 NG RE+R+ RKALCAMEYIYF+RPDSDLNGSNLH+ARKRMGS+MALE+FVDAD+ Sbjct: 250 NGLREERYTEAG---RKALCAMEYIYFSRPDSDLNGSNLHSARKRMGSKMALESFVDADV 306 Query: 316 VTGVPDSSISAAIGYAEQTGIPYELGLIKNKYTGRTFIQPSQELREQGVKMKLSAVRRVV 375 VTGVPDSSISAAIGYAEQTGIPYELGLIKNKYTGRTFIQPSQELREQGVKMKLSAVRRVV Sbjct: 307 VTGVPDSSISAAIGYAEQTGIPYELGLIKNKYTGRTFIQPSQELREQGVKMKLSAVRRVV 366 Query: 376 EGQRVVMIDDSIVRGTTSRRIVNLLREAGATEVHVRITSPPFKNPCFYGIDTPDRRELIA 435 EG+RVVMIDDSIVRGTTSRRIVNLLREAGATEVHVRITSPPFKNPCFYGIDTPDRRELIA Sbjct: 367 EGKRVVMIDDSIVRGTTSRRIVNLLREAGATEVHVRITSPPFKNPCFYGIDTPDRRELIA 426 Query: 436 SYKTVEEICHEINADSLAFLTPAGLIQAIGGYNSGDYKGGLCLSCFDNDYPTQVDFGGEE 495 S K+VEEIC EINADSL+FL+P GLI AIGGY+ KGGLC++CFDN+YPTQ+DF GEE Sbjct: 427 SEKSVEEICREINADSLSFLSPEGLISAIGGYDEHSPKGGLCMACFDNEYPTQIDFNGEE 486 Query: 496 KDGCSC 501 K GCSC Sbjct: 487 KMGCSC 492 >B1D8Y6.1 B1D8Y6_9BACL Amidophosphoribosyltransferase Length = 492 Score = 773 bits (1996), Expect = 0.0, Method: Compositional matrix adjust. Identities = 374/505 (74%), Positives = 430/505 (85%), Gaps = 17/505 (3%) Query: 1 MSYEIKTGNKQENPILWTGDFYNEGTGSGDIFDTLKEECGVFGVFGHPEAASMSYYGLHA 60 MS EIK LWTG+ YNEG G D+FD L+EECGVFGVF P A+S+SYYGLHA Sbjct: 1 MSDEIKQHK------LWTGNHYNEGIGRDDMFDKLREECGVFGVFNVPNASSLSYYGLHA 54 Query: 61 LQHRGEESAGICVAD---GRDFHYHRGMGLVKEVFDKDKIASLVGNMSIGHVRYSTSGDS 117 LQHRGEESAGIC D G F YHRGMGLVKEVFDK++I SL G+ SIGHVRYST+G+S Sbjct: 55 LQHRGEESAGICTVDTEAGNRFSYHRGMGLVKEVFDKERIQSLAGDRSIGHVRYSTAGES 114 Query: 118 RLTNAQPLVFKYRDGDLAIATNGNIVNEPLIRKQLEQSGSIFQTTSDTEVLAHLIARSQK 177 +L NAQPL+F+YRDGDLA+ATNGNIVN P IRK+LE GSIFQT+SDTEV+AHLIARS K Sbjct: 115 KLANAQPLIFRYRDGDLAVATNGNIVNAPEIRKELESQGSIFQTSSDTEVIAHLIARSSK 174 Query: 178 EFVEATKDALQQLVGGFAFLLMTNDKLIVASDTHGLRPLVMGRVGEAYVFASESCALEVI 237 F EA KDALQ+++GGFAFL+MTNDKL+VASD +GLRPLVMGR+G+ YVF+SESCA E I Sbjct: 175 SFEEAAKDALQRIIGGFAFLIMTNDKLLVASDPNGLRPLVMGRIGDGYVFSSESCAFESI 234 Query: 238 GAQFVRDIEPGELLVLDQNGFREDRFAXXXXPQRKALCAMEYIYFARPDSDLNGSNLHAA 297 GA++VRD++PGELL LD +G REDR+A +R+A CAMEYIYFARPDSD+N N+H+A Sbjct: 235 GAEYVRDVQPGELLYLDADGMREDRYAEV---ERRATCAMEYIYFARPDSDINTINIHSA 291 Query: 298 RKRMGSRMALEAFVDADIVTGVPDSSISAAIGYAEQTGIPYELGLIKNKYTGRTFIQPSQ 357 RKRMG ++A+E+FVDADIV GVPDSSISA+IGYAEQTGIPYELGLIKNKYTGRTFIQPSQ Sbjct: 292 RKRMGKQLAMESFVDADIVIGVPDSSISASIGYAEQTGIPYELGLIKNKYTGRTFIQPSQ 351 Query: 358 ELREQGVKMKLSAVRRVVEGQRVVMIDDSIVRGTTSRRIVNLLREAGATEVHVRITSPPF 417 ELREQGVKMKLSAVR+VVEG+RVVMIDDSIVRGTTSRRIVN+LREAGATEVHVRITSPPF Sbjct: 352 ELREQGVKMKLSAVRKVVEGRRVVMIDDSIVRGTTSRRIVNMLREAGATEVHVRITSPPF 411 Query: 418 KNPCFYGIDTPDRRELIASYKTVEEICHEINADSLAFLTPAGLIQAIGGYNSGDYKGGLC 477 KNPC+YGIDTPDR+EL+AS +TV+E+C INADSL FL+ G I ++GG N G Y G+C Sbjct: 412 KNPCYYGIDTPDRKELVASSRTVQEMCEMINADSLYFLSHEGFIDSVGG-NDGAYNRGMC 470 Query: 478 LSCFDNDYPTQVDFGGEEKD-GCSC 501 L+CFDNDYPT VD EE D CSC Sbjct: 471 LACFDNDYPTPVD---EESDKSCSC 492 >C0ZKC7.1 C0ZKC7_BREBN Amidophosphoribosyltransferase EC=2.4.2.14 Length = 472 Score = 602 bits (1552), Expect = e-170, Method: Compositional matrix adjust. Identities = 283/462 (61%), Positives = 366/462 (79%), Gaps = 5/462 (1%) Query: 31 IFDTLKEECGVFGVFGHPEAASMSYYGLHALQHRGEESAGICVADGRDFHYHRGMGLVKE 90 I+D L EECGVFG++ H EA+ ++Y GLHALQHRG+ESAGIC +DG ++ HRGMGLV E Sbjct: 6 IWDKLNEECGVFGIYNHKEASQLTYLGLHALQHRGQESAGICASDGEKWYKHRGMGLVSE 65 Query: 91 VFDKDKIASLVGNMSIGHVRYSTSGDSRLTNAQPLVFKYRDGDLAIATNGNIVNEPLIRK 150 F K + G+++IGH RY+T+G S++ NAQPL F+Y G +A+A NGN+VN ++RK Sbjct: 66 AFGKGDLEKFSGHIAIGHTRYTTAGSSKIENAQPLFFRYAQGSMAVAHNGNLVNAAVLRK 125 Query: 151 QLEQSGSIFQTTSDTEVLAHLIARSQ-KEFVEATKDALQQLVGGFAFLLMTNDKLIVASD 209 +LE GSIFQTTSDTEV+AHLIARS+ K+ A KDALQ + G +A L+M ++L++A D Sbjct: 126 ELEAKGSIFQTTSDTEVIAHLIARSECKDLPGAVKDALQYIKGAYALLVMNENQLVIALD 185 Query: 210 THGLRPLVMGRVGEAYVFASESCALEVIGAQFVRDIEPGELLVLDQNGFREDRFAXXXXP 269 +GLRPL +GR+G+A ASE+CA ++IGAQ+ RD++PGEL+V+D+NG E + Sbjct: 186 PNGLRPLSLGRLGDAITVASETCAFDIIGAQYWRDVQPGELIVVDKNGITESKHTETT-- 243 Query: 270 QRKALCAMEYIYFARPDSDLNGSNLHAARKRMGSRMALEAFVDADIVTGVPDSSISAAIG 329 ++++C EYIYFARPDSD++G N+H ARKR+G ++ALE+ +DAD+VTGVPDSSISAAIG Sbjct: 244 -QRSICTFEYIYFARPDSDIDGINVHMARKRLGKQLALESAIDADVVTGVPDSSISAAIG 302 Query: 330 YAEQTGIPYELGLIKNKYTGRTFIQPSQELREQGVKMKLSAVRRVVEGQRVVMIDDSIVR 389 +AE TGIPYE+GLIKN+Y GRTFIQPSQELRE+ V +KLSAVR+VVEG+RVVMIDDSIVR Sbjct: 303 FAEATGIPYEIGLIKNRYVGRTFIQPSQELRERAVYLKLSAVRKVVEGKRVVMIDDSIVR 362 Query: 390 GTTSRRIVNLLREAGATEVHVRITSPPFKNPCFYGIDTPDRRELIASYKTVEEICHEINA 449 GTTS RIV +LREAGA EVHVRI+SPP N CFYGIDT R ELIAS K+VEEI I A Sbjct: 363 GTTSNRIVRMLREAGAKEVHVRISSPPVMNSCFYGIDTSSREELIASTKSVEEIRQIIEA 422 Query: 450 DSLAFLTPAGLIQAIGGYNSGDYKGGLCLSCFDNDYPTQVDF 491 DSL+FL+ G+I AIG +S +G CL+CF+ +YPT+++F Sbjct: 423 DSLSFLSIEGMIDAIGRTDSAPNRGH-CLACFNGEYPTEIEF 463 >A7GKH9.1 A7GKH9_BACCN Amidophosphoribosyltransferase Length = 471 Score = 595 bits (1534), Expect = e-168, Method: Compositional matrix adjust. Identities = 283/456 (62%), Positives = 359/456 (78%), Gaps = 5/456 (1%) Query: 35 LKEECGVFGVFGHPEAASMSYYGLHALQHRGEESAGICVADGRDFHYHRGMGLVKEVFDK 94 L EECG+FG++GH AA ++YYGLH+LQHRG+E AGI V +G H+G+GLV EVF + Sbjct: 8 LNEECGIFGIWGHENAAQVTYYGLHSLQHRGQEGAGIVVNNGEKIIGHKGLGLVSEVFSR 67 Query: 95 DKIASLVGNMSIGHVRYSTSGDSRLTNAQPLVFKYRDGDLAIATNGNIVNEPLIRKQLEQ 154 ++ L G +IGHVRY+T+G S + N QPL+F++ D +A+A NGN++N ++R++LE Sbjct: 68 GELEGLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEA 127 Query: 155 SGSIFQTTSDTEVLAHLIARSQK-EFVEATKDALQQLVGGFAFLLMTNDKLIVASDTHGL 213 GSIFQT+SDTEVL HLI R+ K +E+ KDAL ++ G FA+LL+T+ ++IVA D +G Sbjct: 128 EGSIFQTSSDTEVLLHLIKRNTKGSLIESVKDALNKVKGAFAYLLLTSHEMIVALDPNGF 187 Query: 214 RPLVMGRVGEAYVFASESCALEVIGAQFVRDIEPGELLVLDQNGFREDRFAXXXXPQRKA 273 RPL +G++G+AYV ASE+CA +V+GA ++RD+EPGELL+++ G + DRF A Sbjct: 188 RPLSIGKMGDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIQVDRFTNEV---EHA 244 Query: 274 LCAMEYIYFARPDSDLNGSNLHAARKRMGSRMALEAFVDADIVTGVPDSSISAAIGYAEQ 333 +C+MEYIYFARPDS++ G N+HAARK MG R+A+EA + AD+VTGVPDSSISAAIGYAE Sbjct: 245 ICSMEYIYFARPDSNIAGVNVHAARKNMGKRLAMEAPIAADVVTGVPDSSISAAIGYAEA 304 Query: 334 TGIPYELGLIKNKYTGRTFIQPSQELREQGVKMKLSAVRRVVEGQRVVMIDDSIVRGTTS 393 TGIPYELGLIKN+Y GRTFIQPSQELREQGVKMKLSAVR VVEG+RVVMIDDSIVRGTTS Sbjct: 305 TGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTS 364 Query: 394 RRIVNLLREAGATEVHVRITSPPFKNPCFYGIDTPDRRELIASYKTVEEICHEINADSLA 453 +RIV +LREAGATEVHVRI SPP K PCFYGID R+ELIA+ +VEEIC I ADSL Sbjct: 365 KRIVRMLREAGATEVHVRIASPPLKYPCFYGIDIQTRKELIAANHSVEEICQIIGADSLT 424 Query: 454 FLTPAGLIQAIGGYNSGDYKGGLCLSCFDNDYPTQV 489 FL+ GL+ AIG G Y GGLC++ F+ DYPT + Sbjct: 425 FLSEDGLVDAIGRPYEGKY-GGLCMAYFNGDYPTAL 459 >B7H4T7.1 B7H4T7_BACC4 Amidophosphoribosyltransferase EC=2.4.2.14 Length = 471 Score = 595 bits (1533), Expect = e-168, Method: Compositional matrix adjust. Identities = 284/456 (62%), Positives = 359/456 (78%), Gaps = 5/456 (1%) Query: 35 LKEECGVFGVFGHPEAASMSYYGLHALQHRGEESAGICVADGRDFHYHRGMGLVKEVFDK 94 L EECGVFG++GH AA +SYYGLH+LQHRG+E AGI V +G H+G+GL+ EVF + Sbjct: 8 LNEECGVFGIWGHENAAQVSYYGLHSLQHRGQEGAGIVVNNGEKIVGHKGLGLISEVFSR 67 Query: 95 DKIASLVGNMSIGHVRYSTSGDSRLTNAQPLVFKYRDGDLAIATNGNIVNEPLIRKQLEQ 154 ++ L G +IGHVRY+T+G S + N QPL+F++ D +A+A NGN++N ++R++LE Sbjct: 68 GELEGLNGKSAIGHVRYATAGGSEVANVQPLLFRFSDHSMALAHNGNLINAKMLRRELEA 127 Query: 155 SGSIFQTTSDTEVLAHLIARSQKE-FVEATKDALQQLVGGFAFLLMTNDKLIVASDTHGL 213 GSIFQT+SDTEVL HLI RS K+ +E+ K+AL ++ G FA+LL+T +++IVA D++G Sbjct: 128 EGSIFQTSSDTEVLLHLIKRSTKDSLIESVKEALNKVKGAFAYLLLTGNEMIVALDSNGF 187 Query: 214 RPLVMGRVGEAYVFASESCALEVIGAQFVRDIEPGELLVLDQNGFREDRFAXXXXPQRKA 273 RPL +G++G+AYV ASE+CA +V+GA ++RD+EPGELL+++ G DRF A Sbjct: 188 RPLSIGKMGDAYVVASETCAFDVVGATYIRDVEPGELLIINDEGIHVDRFTNDV---EHA 244 Query: 274 LCAMEYIYFARPDSDLNGSNLHAARKRMGSRMALEAFVDADIVTGVPDSSISAAIGYAEQ 333 +C+MEYIYFARPDS++ G N+HAARK MG R+A EA ++AD+VTGVPDSSISAAIGYAE Sbjct: 245 ICSMEYIYFARPDSNIAGVNVHAARKNMGKRLAAEAPIEADVVTGVPDSSISAAIGYAEA 304 Query: 334 TGIPYELGLIKNKYTGRTFIQPSQELREQGVKMKLSAVRRVVEGQRVVMIDDSIVRGTTS 393 TGIPYELGLIKN+Y GRTFIQPSQELREQGVKMKLSAVR VVEG+RVVMIDDSIVRGTTS Sbjct: 305 TGIPYELGLIKNRYVGRTFIQPSQELREQGVKMKLSAVRGVVEGKRVVMIDDSIVRGTTS 364 Query: 394 RRIVNLLREAGATEVHVRITSPPFKNPCFYGIDTPDRRELIASYKTVEEICHEINADSLA 453 +RIV +LREAGATEVHVRI SPP K PCFYGID R+ELIA+ TVEEI I ADSL Sbjct: 365 KRIVRMLREAGATEVHVRIASPPLKYPCFYGIDIQTRKELIAANHTVEEIREMIGADSLT 424 Query: 454 FLTPAGLIQAIGGYNSGDYKGGLCLSCFDNDYPTQV 489 FL+ GL+ AIG G Y GGLC++ F+ DYPT + Sbjct: 425 FLSEDGLVDAIGRPYEGKY-GGLCMAYFNGDYPTAL 459 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.319 0.137 0.401 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 3,051,258,613 Number of extensions: 129945867 Number of successful extensions: 339234 Number of sequences better than 1.0e-05: 3771 Number of HSP's gapped: 330087 Number of HSP's successfully gapped: 3781 Length of query: 501 Length of database: 3,060,696,203 Length adjustment: 140 Effective length of query: 361 Effective length of database: 1,741,754,103 Effective search space: 628773231183 Effective search space used: 628773231183 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 133 (55.8 bits)