BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0442.0005.p
         (81 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KA77.1 B3KA77_9BACI Phosphoribosylformylglycinamidine synthase...   140   3e-32
B1D8Y3.1 B1D8Y3_9BACL Phosphoribosylformylglycinamidine synthase...   125   1e-27
C0ZKC4.1 C0ZKC4_BREBN Phosphoribosylformylglycinamidine syntheta...   120   5e-26
Q81ZH4.1 Q81ZH4_BACAN Phosphoribosylformylglycinamidine synthase...   108   2e-22
C3PBM8.1 C3PBM8_BACAA Phosphoribosylformylglycinamidine synthase...   108   2e-22

>B3KA77.1 B3KA77_9BACI Phosphoribosylformylglycinamidine synthase, purS
          Length = 81

 Score =  140 bits (354), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 68/80 (85%), Positives = 75/80 (93%)

Query: 1  MLKATVYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLK 60
          MLKA VYVTIK+SVLDPQGVAVQGALHS+G++EVESLRIGKYMEL L TDNR EAE R+K
Sbjct: 1  MLKAKVYVTIKQSVLDPQGVAVQGALHSIGYKEVESLRIGKYMELELGTDNREEAELRVK 60

Query: 61 EMCEKLLANTVIEDYRYELE 80
          EMCEKLLANTV+E+YRYELE
Sbjct: 61 EMCEKLLANTVVENYRYELE 80


>B1D8Y3.1 B1D8Y3_9BACL Phosphoribosylformylglycinamidine synthase, purS
          Length = 80

 Score =  125 bits (314), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 57/79 (72%), Positives = 72/79 (91%)

Query: 2  LKATVYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLKE 61
          +KA VYVTIK++VLDPQG AVQG+LH++GF EV+ +RIGKY+EL LDT++RAEAE R+K 
Sbjct: 1  MKAKVYVTIKENVLDPQGQAVQGSLHTMGFAEVDKVRIGKYLELQLDTNDRAEAEARVKV 60

Query: 62 MCEKLLANTVIEDYRYELE 80
          MCEKLLANTV+ED+R+ELE
Sbjct: 61 MCEKLLANTVVEDFRFELE 79


>C0ZKC4.1 C0ZKC4_BREBN Phosphoribosylformylglycinamidine synthetase
          EC=6.3.5.3
          Length = 82

 Score =  120 bits (300), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 54/79 (68%), Positives = 70/79 (88%)

Query: 1  MLKATVYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLK 60
          M KA VYVT+++SVLDPQG AV+GALH++GF EV + RIGKYMEL L+T +RA+AE R++
Sbjct: 1  MFKAVVYVTLRESVLDPQGHAVKGALHTLGFDEVNNARIGKYMELELNTPDRAQAEERVR 60

Query: 61 EMCEKLLANTVIEDYRYEL 79
          EMCEKLLANTV+EDYR+++
Sbjct: 61 EMCEKLLANTVVEDYRFDI 79


>Q81ZH4.1 Q81ZH4_BACAN Phosphoribosylformylglycinamidine synthase, PurS
          protein
          Length = 84

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 68/81 (83%), Gaps = 1/81 (1%)

Query: 1  MLKATVYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLK 60
          M K  VYVT+++SVLDPQG AV+GALHS+ F EV+ +RIGKYMELT+D  + ++ + ++K
Sbjct: 1  MYKVKVYVTLRESVLDPQGTAVKGALHSLSFTEVQDVRIGKYMELTIDK-SVSDLDAKVK 59

Query: 61 EMCEKLLANTVIEDYRYELED 81
          EMCEKLLAN V+ED+RYE+E+
Sbjct: 60 EMCEKLLANVVMEDFRYEVEE 80


>C3PBM8.1 C3PBM8_BACAA Phosphoribosylformylglycinamidine synthase, purS
          protein
          Length = 84

 Score =  108 bits (270), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 50/81 (61%), Positives = 68/81 (83%), Gaps = 1/81 (1%)

Query: 1  MLKATVYVTIKKSVLDPQGVAVQGALHSVGFQEVESLRIGKYMELTLDTDNRAEAEGRLK 60
          M K  VYVT+++SVLDPQG AV+GALHS+ F EV+ +RIGKYMELT+D  + ++ + ++K
Sbjct: 1  MYKVKVYVTLRESVLDPQGTAVKGALHSLSFTEVQDVRIGKYMELTIDK-SVSDLDAKVK 59

Query: 61 EMCEKLLANTVIEDYRYELED 81
          EMCEKLLAN V+ED+RYE+E+
Sbjct: 60 EMCEKLLANVVMEDFRYEVEE 80


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.315    0.133    0.357 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 417,593,292
Number of extensions: 13206464
Number of successful extensions: 26668
Number of sequences better than 1.0e-05: 524
Number of HSP's gapped: 26462
Number of HSP's successfully gapped: 524
Length of query: 81
Length of database: 3,060,696,203
Length adjustment: 51
Effective length of query: 30
Effective length of database: 2,580,224,438
Effective search space: 77406733140
Effective search space used: 77406733140
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)