BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0442.0001.p
         (171 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B1D8Y0.1 B1D8Y0_9BACL Phosphoribosylaminoimidazole carboxylase, ...   132   1e-29
B3KA74.1 B3KA74_9BACI Phosphoribosylaminoimidazole carboxylase, ...   112   9e-24
Q1AZE7.1 Q1AZE7_RUBXD Phosphoribosylaminoimidazole carboxylase E...   107   5e-22
C0ZK64.1 C0ZK64_BREBN Phosphoribosylaminoimidazole carboxylase A...    99   1e-19
Q2B0S2.1 Q2B0S2_9BACI Phosphoribosylaminoimidazole carboxylase E...    91   3e-17

>B1D8Y0.1 B1D8Y0_9BACL Phosphoribosylaminoimidazole carboxylase, ATPase
           subunit
          Length = 388

 Score =  132 bits (331), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 69/114 (60%), Positives = 73/114 (64%)

Query: 46  RMMALAGSAMGYRFVALDPAPDAPCGQVTPQITXXXXXXXXXXXXXXXXXVITYEFENVD 105
           RMMALAGSAMGYRFVALDP  DAPCGQV  QI                  VITYEFENVD
Sbjct: 26  RMMALAGSAMGYRFVALDPTADAPCGQVADQIVAAYNDREAARELARRADVITYEFENVD 85

Query: 106 ADVAALLTAESYVPQGSALLYTTQHRLREKXXXXXXXXXXXXYRKVGSLAELTA 159
           ADVAA+L +ESYVPQGS LLYTTQHRLREK            Y ++ S  EL A
Sbjct: 86  ADVAAMLMSESYVPQGSELLYTTQHRLREKRAIEAAGVRVAPYSEIRSSEELRA 139


>B3KA74.1 B3KA74_9BACI Phosphoribosylaminoimidazole carboxylase, ATPase
           subunit
          Length = 395

 Score =  112 bits (281), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 58/112 (51%), Positives = 67/112 (59%)

Query: 46  RMMALAGSAMGYRFVALDPAPDAPCGQVTPQITXXXXXXXXXXXXXXXXXVITYEFENVD 105
           RM+AL G  MGY FV LDP P++P GQ+  Q+T                 VITYEFENVD
Sbjct: 32  RMIALDGIRMGYSFVTLDPTPNSPLGQMAEQVTARYDDVEAARQLAAKADVITYEFENVD 91

Query: 106 ADVAALLTAESYVPQGSALLYTTQHRLREKXXXXXXXXXXXXYRKVGSLAEL 157
           A VA LL  +SYVPQGS LLYTTQHRLREK            YR++ SL +L
Sbjct: 92  AGVAQLLEEQSYVPQGSKLLYTTQHRLREKAAIEAAGVPVAPYREITSLEDL 143


>Q1AZE7.1 Q1AZE7_RUBXD Phosphoribosylaminoimidazole carboxylase EC=4.1.1.21
          Length = 388

 Score =  107 bits (266), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 61/91 (67%), Gaps = 1/91 (1%)

Query: 46  RMMALAGSAMGYRFVALDPAPDAPCGQVTP-QITXXXXXXXXXXXXXXXXXVITYEFENV 104
           RM+ALAG  MGYRFV LDP P+AP GQV+  Q+                  VITYEFENV
Sbjct: 21  RMLALAGGHMGYRFVVLDPTPNAPAGQVSSGQVVAAYDDREAAGRLAASSDVITYEFENV 80

Query: 105 DADVAALLTAESYVPQGSALLYTTQHRLREK 135
           DA VA +L  E+YVPQGS LL+TTQHRLREK
Sbjct: 81  DAGVAGMLEREAYVPQGSRLLHTTQHRLREK 111


>C0ZK64.1 C0ZK64_BREBN Phosphoribosylaminoimidazole carboxylase ATPase
           subunit EC=4.1.1.21
          Length = 387

 Score = 99.4 bits (246), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 54/113 (47%), Positives = 64/113 (56%), Gaps = 1/113 (0%)

Query: 46  RMMALAGSAMGYRFVALDPAPDAPCGQVTP-QITXXXXXXXXXXXXXXXXXVITYEFENV 104
           RM+ALAG AMGYRFV +DP  DAPCGQ    QI                  VI+YEFENV
Sbjct: 25  RMIALAGRAMGYRFVTMDPTADAPCGQTADRQIVASYDDVEAAMQLASVSDVISYEFENV 84

Query: 105 DADVAALLTAESYVPQGSALLYTTQHRLREKXXXXXXXXXXXXYRKVGSLAEL 157
           DA VA +L + +YVPQGS LL  TQ+R+REK            +  V SL +L
Sbjct: 85  DAQVAEVLESRAYVPQGSRLLRITQNRIREKTAIREIGIPVAPFCVVNSLEDL 137


>Q2B0S2.1 Q2B0S2_9BACI Phosphoribosylaminoimidazole carboxylase EC=4.1.1.21
          Length = 386

 Score = 91.3 bits (225), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 49/113 (43%), Positives = 60/113 (53%), Gaps = 1/113 (0%)

Query: 46  RMMALAGSAMGYRFVALDPAPDAPCGQVTP-QITXXXXXXXXXXXXXXXXXVITYEFENV 104
           RMMALA  A G+R   LDPAPD+PCGQV   QI                  VITYEFEN+
Sbjct: 24  RMMALAAKAQGFRIAVLDPAPDSPCGQVADRQIVGGYDNLLCIKELAEASDVITYEFENI 83

Query: 105 DADVAALLTAESYVPQGSALLYTTQHRLREKXXXXXXXXXXXXYRKVGSLAEL 157
           +A+    LT+ +YVPQGS LL  TQ RL EK            Y ++   A++
Sbjct: 84  NAEALDWLTSHAYVPQGSELLRITQDRLTEKEAIERAGAKVAPYARIEKTADI 136


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.320    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 711,316,348
Number of extensions: 16741004
Number of successful extensions: 23604
Number of sequences better than 1.0e-05: 294
Number of HSP's gapped: 23564
Number of HSP's successfully gapped: 294
Length of query: 171
Length of database: 3,060,696,203
Length adjustment: 126
Effective length of query: 45
Effective length of database: 1,873,648,313
Effective search space: 84314174085
Effective search space used: 84314174085
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 126 (53.1 bits)