BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0440.0017.p
         (91 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KFP1.1 B3KFP1_9BACI Phosphocarrier, HPr family                      106   9e-22
B7GIF7.1 B7GIF7_ANOFW Phosphotransferase system, HPr-related pro...    67   4e-10
C2UZX7.1 C2UZX7_BACCE Putative uncharacterized protein                 67   6e-10
Q81MI0.1 Q81MI0_BACAN Phosphocarrier protein HPr                       66   1e-09
Q819D6.1 Q819D6_BACCR Phosphocarrier protein HPr                       66   1e-09

>B3KFP1.1 B3KFP1_9BACI Phosphocarrier, HPr family
          Length = 91

 Score =  106 bits (264), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 54/91 (59%), Positives = 60/91 (65%)

Query: 1  MQKTFRITDEDGIHARPATTLVNTATKYKNTEAFAEARGKKVTLKSILGVLSXXXXXXXX 60
          MQ+TFRI DEDGIHARPAT LVNTA K+++T +FAEA GKKVTLKSILGVLS        
Sbjct: 1  MQQTFRIIDEDGIHARPATALVNTANKFQDTNSFAEANGKKVTLKSILGVLSLGLEQGDT 60

Query: 61 XXXXXXXXXXXXXXXXXQEVMVKEGLGEVHE 91
                           QEVMV EGLGE+HE
Sbjct: 61 LTLITEGGNESEALTALQEVMVNEGLGELHE 91


>B7GIF7.1 B7GIF7_ANOFW Phosphotransferase system, HPr-related protein
          Length = 90

 Score = 67.4 bits (163), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 38/88 (43%), Positives = 48/88 (54%), Gaps = 1/88 (1%)

Query: 1  MQKTFRITDEDGIHARPATTLVNTATKYKNTEAFAEARGKKVTLKSILGVLSXXXXXXXX 60
          MQKTF++T E GIHARPAT LV TA+K+ +++   E  GKKV LKSI+GV+S        
Sbjct: 4  MQKTFKVTAESGIHARPATMLVQTASKF-DSDIQLEYNGKKVNLKSIMGVMSLGIPQGAQ 62

Query: 61 XXXXXXXXXXXXXXXXXQEVMVKEGLGE 88
                            E + KEGL E
Sbjct: 63 ITISAEGSDAADAMNALTETLAKEGLAE 90


>C2UZX7.1 C2UZX7_BACCE Putative uncharacterized protein
          Length = 87

 Score = 67.0 bits (162), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 37/88 (42%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 1  MQKTFRITDEDGIHARPATTLVNTATKYKNTEAFAEARGKKVTLKSILGVLSXXXXXXXX 60
          M+K F++T + GIHARPAT LVNTA+K+  +E   E  GK V LKSI+GV+S        
Sbjct: 1  MEKIFKVTSDSGIHARPATLLVNTASKF-GSEINLEYNGKNVNLKSIMGVMSLGIQQNAE 59

Query: 61 XXXXXXXXXXXXXXXXXQEVMVKEGLGE 88
                           +E M  EGLGE
Sbjct: 60 IKITANGDDAAQALAAIEETMKNEGLGE 87


>Q81MI0.1 Q81MI0_BACAN Phosphocarrier protein HPr
          Length = 87

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 1  MQKTFRITDEDGIHARPATTLVNTATKYKNTEAFAEARGKKVTLKSILGVLSXXXXXXXX 60
          M+K F++T + GIHARPAT LVNTA+K+  ++   E  GK V LKSI+GV+S        
Sbjct: 1  MEKIFKVTSDSGIHARPATLLVNTASKF-GSDINLEYNGKNVNLKSIMGVMSLGIQQNAE 59

Query: 61 XXXXXXXXXXXXXXXXXQEVMVKEGLGE 88
                           +E M  EGLGE
Sbjct: 60 IKITANGDDAAQALAAIEETMKNEGLGE 87


>Q819D6.1 Q819D6_BACCR Phosphocarrier protein HPr
          Length = 87

 Score = 65.9 bits (159), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 36/88 (40%), Positives = 47/88 (53%), Gaps = 1/88 (1%)

Query: 1  MQKTFRITDEDGIHARPATTLVNTATKYKNTEAFAEARGKKVTLKSILGVLSXXXXXXXX 60
          M+K F++T + GIHARPAT LVNTA+K+  ++   E  GK V LKSI+GV+S        
Sbjct: 1  MEKIFKVTSDSGIHARPATLLVNTASKF-GSDINLEYNGKNVNLKSIMGVMSLGIQQNAE 59

Query: 61 XXXXXXXXXXXXXXXXXQEVMVKEGLGE 88
                           +E M  EGLGE
Sbjct: 60 IKITANGDDAAQALAAIEETMKNEGLGE 87


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.312    0.128    0.339 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 317,920,535
Number of extensions: 6676551
Number of successful extensions: 12696
Number of sequences better than 1.0e-05: 224
Number of HSP's gapped: 12791
Number of HSP's successfully gapped: 224
Length of query: 91
Length of database: 3,060,696,203
Length adjustment: 60
Effective length of query: 31
Effective length of database: 2,495,435,303
Effective search space: 77358494393
Effective search space used: 77358494393
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 126 (53.1 bits)