BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0440.0015.p
         (112 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B4AJQ3.1 B4AJQ3_BACPU Lichenan-specific phosphotransferase enzym...   104   3e-21
C4IEN8.1 C4IEN8_CLOBU Lichenan-specific phosphotransferase enzym...   103   4e-21
B1R069.1 B1R069_CLOBU Lichenan-specific phosphotransferase enzym...   103   4e-21
A6M216.1 A6M216_CLOB8 Phosphotransferase system PTS, lactose/cel...   103   6e-21
Q815E6.1 Q815E6_BACCR PTS system, lichenan oligosaccharide-speci...   102   1e-20

>B4AJQ3.1 B4AJQ3_BACPU Lichenan-specific phosphotransferase enzyme iia
           component (Pts system lichenan-specific eiia component)
           (Eiia-lic) (Eiii-lic) EC=2.7.1.-
          Length = 108

 Score =  104 bits (259), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 60/103 (58%), Positives = 68/103 (66%)

Query: 8   MEYIEKVMSMIAKSGAARSQAMEAIMVAKQKNYAGAAELLDNASQDLKDAHKVQTQLIQE 67
           ME  + V  +I   G  RS AMEAI  AKQ N+  A + L  A   L +AH  QT+LIQ 
Sbjct: 1   MEMEQIVFQLILHGGNGRSSAMEAITCAKQGNFDEAKQKLQEAQDALNEAHHAQTELIQG 60

Query: 68  EAGGTKHEISLLMIHAQDHLMNAMTVKDLAKEIIELHEYTHQL 110
           E  G K +ISLLMIHAQDHLMNAMTVK+LA EIIELHE   QL
Sbjct: 61  EIRGEKTDISLLMIHAQDHLMNAMTVKELAAEIIELHEKMKQL 103


>C4IEN8.1 C4IEN8_CLOBU Lichenan-specific phosphotransferase enzyme iia
           component EC=2.7.1.-
          Length = 99

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 70/94 (74%)

Query: 12  EKVMSMIAKSGAARSQAMEAIMVAKQKNYAGAAELLDNASQDLKDAHKVQTQLIQEEAGG 71
           E +M++I  SG  RS +MEAI  AK+ N   A  L++ A ++L ++HKVQT LIQ EA G
Sbjct: 3   EIIMNLILHSGEVRSYSMEAIQEAKRGNIEEARNLIEKADKELAESHKVQTSLIQNEAAG 62

Query: 72  TKHEISLLMIHAQDHLMNAMTVKDLAKEIIELHE 105
            K E+SLL++HAQDHLM +MTVKDLA EII++HE
Sbjct: 63  KKTEVSLLLVHAQDHLMTSMTVKDLAIEIIDIHE 96


>B1R069.1 B1R069_CLOBU Lichenan-specific phosphotransferase enzyme iia
           component EC=2.7.1.-
          Length = 99

 Score =  103 bits (258), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 70/94 (74%)

Query: 12  EKVMSMIAKSGAARSQAMEAIMVAKQKNYAGAAELLDNASQDLKDAHKVQTQLIQEEAGG 71
           E +M++I  SG  RS +MEAI  AK+ N   A  L++ A ++L ++HKVQT LIQ EA G
Sbjct: 3   EIIMNLILHSGEVRSYSMEAIQEAKRGNIEEARNLIEKADKELAESHKVQTSLIQNEAAG 62

Query: 72  TKHEISLLMIHAQDHLMNAMTVKDLAKEIIELHE 105
            K E+SLL++HAQDHLM +MTVKDLA EII++HE
Sbjct: 63  KKTEVSLLLVHAQDHLMTSMTVKDLAIEIIDIHE 96


>A6M216.1 A6M216_CLOB8 Phosphotransferase system PTS,
           lactose/cellobiose-specific IIA subunit
          Length = 103

 Score =  103 bits (256), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 53/94 (56%), Positives = 67/94 (71%)

Query: 12  EKVMSMIAKSGAARSQAMEAIMVAKQKNYAGAAELLDNASQDLKDAHKVQTQLIQEEAGG 71
           E +M++I  SG  RS +MEAI  AK  N  GA +L++ A  +L  AH VQT LIQ+EA G
Sbjct: 3   ETIMNLIVHSGEVRSYSMEAIQCAKSGNIDGARKLIEQAEAELLKAHNVQTYLIQKEARG 62

Query: 72  TKHEISLLMIHAQDHLMNAMTVKDLAKEIIELHE 105
            K E+SLLMIHAQDH M +MT+K +A EIIE+HE
Sbjct: 63  EKTEVSLLMIHAQDHFMTSMTLKSMAVEIIEIHE 96


>Q815E6.1 Q815E6_BACCR PTS system, lichenan oligosaccharide-specific IIA
           component EC=2.7.1.69
          Length = 105

 Score =  102 bits (254), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 54/98 (55%), Positives = 72/98 (73%), Gaps = 1/98 (1%)

Query: 8   MEYIE-KVMSMIAKSGAARSQAMEAIMVAKQKNYAGAAELLDNASQDLKDAHKVQTQLIQ 66
           M+ IE K   +I   G ARS +MEAI  AK+  +  A   L  A ++LK+AH+VQT+LIQ
Sbjct: 1   MDTIETKAFHLILHGGNARSCSMEAIDCAKRGEFTEAEAKLQEALEELKEAHRVQTELIQ 60

Query: 67  EEAGGTKHEISLLMIHAQDHLMNAMTVKDLAKEIIELH 104
           +EAGG K E++LLM+HAQDHLMNA+TVK+LA E +EL+
Sbjct: 61  KEAGGEKTEVTLLMVHAQDHLMNAITVKELASEFVELY 98


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.313    0.124    0.321 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 525,115,058
Number of extensions: 15695631
Number of successful extensions: 46554
Number of sequences better than 1.0e-05: 1068
Number of HSP's gapped: 46535
Number of HSP's successfully gapped: 1068
Length of query: 112
Length of database: 3,060,696,203
Length adjustment: 79
Effective length of query: 33
Effective length of database: 2,316,436,018
Effective search space: 76442388594
Effective search space used: 76442388594
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 126 (53.1 bits)