BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0440.0014.p (129 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B7V3.1 Q2B7V3_9BACI LicR 127 5e-28 B4AJT7.1 B4AJT7_BACPU Probable licabch operon regulator EC=2.7.1... 123 4e-27 A8FIW8.1 A8FIW8_BACP2 Transcriptional regulator 123 7e-27 A7ZA83.1 A7ZA83_BACA2 LicR 122 1e-26 P46321.1 LICR_BACSU Probable licABCH operon regulator Putative p... 119 1e-25 >Q2B7V3.1 Q2B7V3_9BACI LicR Length = 646 Score = 127 bits (318), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 62/130 (47%), Positives = 88/130 (67%), Gaps = 1/130 (0%) Query: 1 LQLDLENRDEVISYLCNELESRHLVTPAFLESVKQREQLSSTAFGNRTALPHPLVPQTKE 60 LQ + E ++EV+ +L EL L FL +V +RE++S T FGN A+PHP++P+T E Sbjct: 514 LQKEFETKEEVLKFLARELTDLGLTDEHFLPAVLEREEVSPTCFGNLVAIPHPIMPRTDE 573 Query: 61 TFGVICTLKKPVMWGDKPVQFVCLLCVGKKNQQELTILYDTLIQITESPELVEQLIKAET 120 TF ICTL+KPV W DK VQFVCLLCV K ++++L +Y LI++ E LV L+K +T Sbjct: 574 TFWAICTLQKPVDWDDKRVQFVCLLCVRKNSKEDLVNMYKLLIEVVEDSTLVHHLLKCKT 633 Query: 121 FRE-LSCFFS 129 ++E +S F S Sbjct: 634 YKEFISVFLS 643 >B4AJT7.1 B4AJT7_BACPU Probable licabch operon regulator EC=2.7.1.- EC=2.7.1.69 Length = 652 Score = 123 bits (309), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 60/125 (48%), Positives = 87/125 (69%) Query: 1 LQLDLENRDEVISYLCNELESRHLVTPAFLESVKQREQLSSTAFGNRTALPHPLVPQTKE 60 Q DL++R+EV+ + N L+ + + F + + +REQ+S T+FG+ A+PHP+ P T + Sbjct: 508 FQQDLQSREEVLQFFVNVLKEQDRIPEEFEQLLLEREQVSPTSFGHLVAIPHPMKPATDD 567 Query: 61 TFGVICTLKKPVMWGDKPVQFVCLLCVGKKNQQELTILYDTLIQITESPELVEQLIKAET 120 TF ICTLKKPV+WG+ VQ VCLL + K Q+EL LY L+++TE E+VEQLIKA + Sbjct: 568 TFCAICTLKKPVLWGENRVQVVCLLSIQKTYQKELQSLYQFLVRLTERKEVVEQLIKAAS 627 Query: 121 FRELS 125 F EL+ Sbjct: 628 FEELT 632 >A8FIW8.1 A8FIW8_BACP2 Transcriptional regulator Length = 652 Score = 123 bits (308), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 59/126 (46%), Positives = 87/126 (69%) Query: 1 LQLDLENRDEVISYLCNELESRHLVTPAFLESVKQREQLSSTAFGNRTALPHPLVPQTKE 60 Q DL++R+EV+ + N L+ + + F + + +REQ+S T+FG+ A+PHP+ P T + Sbjct: 508 FQQDLQSREEVLQFFVNVLKEQDRIPEEFEQLLLEREQVSPTSFGHLVAIPHPIKPATDD 567 Query: 61 TFGVICTLKKPVMWGDKPVQFVCLLCVGKKNQQELTILYDTLIQITESPELVEQLIKAET 120 TF ICTLKKPV+WG+ VQ VCLL + K Q+EL LY L+++TE E+V+QLIKA + Sbjct: 568 TFCAICTLKKPVLWGENRVQVVCLLSIQKTYQKELQSLYQFLVRLTERKEVVDQLIKAAS 627 Query: 121 FRELSC 126 F EL+ Sbjct: 628 FEELTA 633 >A7ZA83.1 A7ZA83_BACA2 LicR Length = 651 Score = 122 bits (305), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 58/128 (45%), Positives = 86/128 (67%) Query: 1 LQLDLENRDEVISYLCNELESRHLVTPAFLESVKQREQLSSTAFGNRTALPHPLVPQTKE 60 LQ DLE +++VI +L ++ L + + +S+ +RE +S T+FGN TA+PHPLVPQT Sbjct: 509 LQQDLETKEDVIRFLGQQVAEAGLASDSLTDSIFEREAISPTSFGNLTAIPHPLVPQTDT 568 Query: 61 TFGVICTLKKPVMWGDKPVQFVCLLCVGKKNQQELTILYDTLIQITESPELVEQLIKAET 120 TF +CTLKKP+ W DK VQFVCLLCV K+++ +L +Y L + + P V +L+K T Sbjct: 569 TFWAVCTLKKPIDWADKRVQFVCLLCVEKESKADLQHMYKWLGGMLDDPAAVSRLLKCTT 628 Query: 121 FRELSCFF 128 ++E+ F Sbjct: 629 YQEVLRVF 636 >P46321.1 LICR_BACSU Probable licABCH operon regulator Putative phosphotransferase enzyme IIB component Putative phosphotransferase enzyme IIA component EC=2.7.1.69 EC=2.7.1.- Length = 641 Score = 119 bits (297), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 58/129 (44%), Positives = 82/129 (63%) Query: 1 LQLDLENRDEVISYLCNELESRHLVTPAFLESVKQREQLSSTAFGNRTALPHPLVPQTKE 60 Q DL +++EVI +L ++ ++S+ +RE +S T FGN A+PHPLVPQTK Sbjct: 508 FQEDLRSKEEVIQFLGQKVVECGFADEEIIDSIFEREDMSPTCFGNLVAIPHPLVPQTKT 567 Query: 61 TFGVICTLKKPVMWGDKPVQFVCLLCVGKKNQQELTILYDTLIQITESPELVEQLIKAET 120 TF +CTLKKP+ W + VQFVCLLCV K+N+ +L +Y L I + P + QLIK + Sbjct: 568 TFWAVCTLKKPIDWESQRVQFVCLLCVEKENKADLQSMYKLLGSILDDPAAMNQLIKCRS 627 Query: 121 FRELSCFFS 129 ++ELS F Sbjct: 628 YQELSDVFD 636 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.321 0.136 0.400 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 726,703,611 Number of extensions: 26892041 Number of successful extensions: 60144 Number of sequences better than 1.0e-05: 304 Number of HSP's gapped: 60388 Number of HSP's successfully gapped: 304 Length of query: 129 Length of database: 3,060,696,203 Length adjustment: 94 Effective length of query: 35 Effective length of database: 2,175,120,793 Effective search space: 76129227755 Effective search space used: 76129227755 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.8 bits) S2: 125 (52.8 bits)