BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0440.0010.p (379 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Q2B7V1.1 Q2B7V1_9BACI Phosphotransferase system (PTS) lichenan-s... 341 5e-92 P46317.1 PTJC_BACSU Lichenan permease IIC component 341 6e-92 A7ZA81.1 A7ZA81_BACA2 LicC 338 5e-91 A8FIT6.1 A8FIT6_BACP2 PTS family oligomeric beta-glucoside porte... 330 1e-88 B4AJQ4.1 B4AJQ4_BACPU PTS system, cellobiose-specific IIC compon... 329 2e-88 >Q2B7V1.1 Q2B7V1_9BACI Phosphotransferase system (PTS) lichenan-specific enzyme IIC component Length = 449 Score = 341 bits (875), Expect = 5e-92, Method: Compositional matrix adjust. Identities = 180/379 (47%), Positives = 251/379 (66%), Gaps = 14/379 (3%) Query: 1 MSKIQTFMEEKVAPFAGRIGQVKQLVAIRDGISYIMPLIIIGSIALILNSLPIEANWYLN 60 MSK+ F+E KV P AGR+ + L A+RDGI MPLII+GS+ LIL LPI Y + Sbjct: 1 MSKMNDFLENKVMPVAGRVAGQRHLQALRDGIILTMPLIIVGSLFLILGFLPIPG--YDD 58 Query: 61 LMNES---GWGARLGMIVDGTFGLIGILAAFTIAYSLANQYSLDGMSVGILSLSSYLLST 117 M + W +L V TF ++ ++AAF IAY LA +Y +D +S G +S++++LL+T Sbjct: 59 FMANTFGDQWLTKLMYPVGATFDIMALIAAFGIAYRLAEKYGVDALSAGAISVAAFLLAT 118 Query: 118 PNILS--ADNAA-------GIPLSLMGSKGLFVAIIIGIISTEIFRFVISKNLVIKLPDG 168 P +S D A+ IP +LMGSKGLFVA++I ++STEI+RF+I KN++IK+PDG Sbjct: 119 PYQVSFTPDGASEAVLVGGAIPAALMGSKGLFVAMLIAMLSTEIYRFIIQKNIIIKMPDG 178 Query: 169 VPPAVGRSFTALIPGFFIIVFFAAVSWILDATGIGSLHDLIQTVLGKPLGLLGGTIFGAI 228 VPPAV +SF ALIPGF +I + +++ T SLH++I VLGKPLG+LGG++ G++ Sbjct: 179 VPPAVSKSFVALIPGFIVITVIWVLRLLVEQTDFQSLHNIIGEVLGKPLGILGGSLIGSL 238 Query: 229 IYDLLISLFWLTXXXXXXXXXXXXXXXWMQKMDENRLALQAGKELPNIFTQPFFDIFVHM 288 + L+ L W W+ MD NRLA Q G+ LPNIFTQ FFDIFV++ Sbjct: 239 VAVFLVQLLWSCGLHGASIVGGVMGPIWLSAMDANRLAFQGGETLPNIFTQQFFDIFVYI 298 Query: 289 GGAGTIFALAVCLFLFSKSNQNKSMGRLSIMPSAFNIGEPIMFGVPVVLNPIMFIPFILA 348 GG+G AL + + L ++S Q K +GRL+I P FNI EP++FG+P+V+NPI+ +PF+L Sbjct: 299 GGSGATLALVLAMILRARSKQMKQLGRLAIGPGLFNINEPVVFGMPIVMNPILIVPFVLT 358 Query: 349 PIAMVITTYFAMVTGLVPK 367 P+ MV+TTY M TGLV K Sbjct: 359 PLVMVLTTYIGMSTGLVAK 377 >P46317.1 PTJC_BACSU Lichenan permease IIC component Length = 452 Score = 341 bits (875), Expect = 6e-92, Method: Compositional matrix adjust. Identities = 181/379 (47%), Positives = 249/379 (65%), Gaps = 14/379 (3%) Query: 1 MSKIQTFMEEKVAPFAGRIGQVKQLVAIRDGISYIMPLIIIGSIALILNSLPIEANWYLN 60 M+K+ +EEKV P AGRI + L A+RDGI MPLIIIGS LI+ +LPI Y Sbjct: 1 MNKVNQILEEKVMPIAGRIAGQRHLQALRDGIILTMPLIIIGSFFLIIGNLPIPG--YAE 58 Query: 61 LMNE---SGWGARLGMIVDGTFGLIGILAAFTIAYSLANQYSLDGMSVGILSLSSYLLST 117 M + S W +L VD TF ++G++AAF IAY LA +Y +D +S G +SL+++LL+T Sbjct: 59 FMAKTFGSSWSEKLAYPVDATFEIMGLVAAFGIAYRLAEKYGVDALSAGAISLAAFLLAT 118 Query: 118 PNILS--ADNAA-------GIPLSLMGSKGLFVAIIIGIISTEIFRFVISKNLVIKLPDG 168 P + D A GIPLSLMGSKGLFVA+II ++STEI+R +I +NLV K+PDG Sbjct: 119 PYQVPFMPDGATKEIMVGGGIPLSLMGSKGLFVAMIIAMVSTEIYRLIIQRNLVFKMPDG 178 Query: 169 VPPAVGRSFTALIPGFFIIVFFAAVSWILDATGIGSLHDLIQTVLGKPLGLLGGTIFGAI 228 VPPAV +SF ALIPGF +I A I++AT SLH+++ +LG PL +LGG++ G++ Sbjct: 179 VPPAVSKSFVALIPGFAVIFLIWAARLIVEATPFESLHNIVSVLLGTPLSILGGSLGGSL 238 Query: 229 IYDLLISLFWLTXXXXXXXXXXXXXXXWMQKMDENRLALQAGKELPNIFTQPFFDIFVHM 288 + + + L W W MD NR+A QAG+ELP IFTQ FFDI+V++ Sbjct: 239 VAEAVKMLLWACGLHGANIVGGVMAPIWYGAMDANRIAFQAGEELPKIFTQQFFDIWVNI 298 Query: 289 GGAGTIFALAVCLFLFSKSNQNKSMGRLSIMPSAFNIGEPIMFGVPVVLNPIMFIPFILA 348 GG+G AL V +FL ++S Q K +G+L++ P+ FNI EPI+FG+P+V+NP++ +PFI+ Sbjct: 299 GGSGATLALVVTMFLRARSKQMKQLGKLAVGPAIFNINEPIIFGMPIVMNPMLLLPFIIT 358 Query: 349 PIAMVITTYFAMVTGLVPK 367 P+ V TY M TGLV K Sbjct: 359 PLVTVTLTYIGMSTGLVAK 377 >A7ZA81.1 A7ZA81_BACA2 LicC Length = 452 Score = 338 bits (867), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 180/379 (47%), Positives = 248/379 (65%), Gaps = 14/379 (3%) Query: 1 MSKIQTFMEEKVAPFAGRIGQVKQLVAIRDGISYIMPLIIIGSIALILNSLPIEANWYLN 60 M+K+ F+EEKV P AG+I + L A+RDGI MPLIIIGS LI+ +LPI Y + Sbjct: 1 MNKVNQFLEEKVMPIAGKIASQRHLQALRDGIILTMPLIIIGSFFLIIGNLPIPG--YAD 58 Query: 61 LMNE---SGWGARLGMIVDGTFGLIGILAAFTIAYSLANQYSLDGMSVGILSLSSYLLST 117 M + S W +L VD TF ++G++AAF IAY LA +Y +D +S G +SL+++LL+T Sbjct: 59 FMAKTFGSAWSQKLQYPVDATFEIMGLVAAFGIAYRLAEKYGVDALSAGAISLAAFLLAT 118 Query: 118 PNIL-----SADN----AAGIPLSLMGSKGLFVAIIIGIISTEIFRFVISKNLVIKLPDG 168 P + A GIPLSLMGSKGLFVA+II ++STEI+R +I +N V K+PDG Sbjct: 119 PYKVPFLPSGAKEEIMVGGGIPLSLMGSKGLFVAMIIAMLSTEIYRLIIQRNFVFKMPDG 178 Query: 169 VPPAVGRSFTALIPGFFIIVFFAAVSWILDATGIGSLHDLIQTVLGKPLGLLGGTIFGAI 228 VPPAV +SF ALIPGF +I I++AT SLH+++ VLG PL +LGG++ G++ Sbjct: 179 VPPAVSKSFIALIPGFAVIFLIWGARLIVEATPFESLHNIVSVVLGTPLSILGGSLGGSL 238 Query: 229 IYDLLISLFWLTXXXXXXXXXXXXXXXWMQKMDENRLALQAGKELPNIFTQPFFDIFVHM 288 I + + L W W MD NR+A QAG LPNIFTQ FF+I++++ Sbjct: 239 IAEAVQMLLWACGLHGANIVGGVMAPIWFGAMDANRIAFQAGDALPNIFTQQFFEIWINI 298 Query: 289 GGAGTIFALAVCLFLFSKSNQNKSMGRLSIMPSAFNIGEPIMFGVPVVLNPIMFIPFILA 348 GG+G AL V +FL S+S Q K +G+L+I P+ FNI EPI+FG+P+V+NP++ IPFI+ Sbjct: 299 GGSGATLALVVTMFLRSRSKQMKQLGKLAIGPAVFNINEPIIFGMPIVMNPMLLIPFIIT 358 Query: 349 PIAMVITTYFAMVTGLVPK 367 P+ ++ TY M TGLV K Sbjct: 359 PLVTLVFTYIGMSTGLVAK 377 >A8FIT6.1 A8FIT6_BACP2 PTS family oligomeric beta-glucoside porter component IIC Length = 449 Score = 330 bits (847), Expect = 1e-88, Method: Compositional matrix adjust. Identities = 174/379 (45%), Positives = 251/379 (66%), Gaps = 14/379 (3%) Query: 1 MSKIQTFMEEKVAPFAGRIGQVKQLVAIRDGISYIMPLIIIGSIALILNSLPIEANWYLN 60 M+ F+EEKV PFAG+I + L A+RDGI MPLII+GS+ LIL +LPI Y + Sbjct: 1 MNGFNRFLEEKVMPFAGKIAAQRHLQALRDGIVLTMPLIIVGSLFLILANLPIPG--YSD 58 Query: 61 LMNE---SGWGARLGMIVDGTFGLIGILAAFTIAYSLANQYSLDGMSVGILSLSSYLLST 117 M + W +L V+ TF ++ ++A F IAY LA +Y++D +S G ++++++LL+T Sbjct: 59 FMASIFGAEWATKLSYPVNATFDIMALVATFGIAYRLAEKYAVDALSSGAIAVAAFLLAT 118 Query: 118 PNIL------SADN---AAGIPLSLMGSKGLFVAIIIGIISTEIFRFVISKNLVIKLPDG 168 P + S + GIP++LMGSKGLFVA+II ++STEI+RF++ +N+VIK+PDG Sbjct: 119 PYQVPFTPEGSTEAILVGGGIPVTLMGSKGLFVAMIIAMLSTEIYRFIVQRNIVIKMPDG 178 Query: 169 VPPAVGRSFTALIPGFFIIVFFAAVSWILDATGIGSLHDLIQTVLGKPLGLLGGTIFGAI 228 VPPAV +SF ALIPGF +I +++ T S+H++I ++G PL +LGG++ G+I Sbjct: 179 VPPAVSKSFIALIPGFVVITLIWVARLLIEMTPFESIHNIITVLIGTPLSILGGSLGGSI 238 Query: 229 IYDLLISLFWLTXXXXXXXXXXXXXXXWMQKMDENRLALQAGKELPNIFTQPFFDIFVHM 288 + + L W W+ MDENRLA QAG+ LPNIFT FF+IF+++ Sbjct: 239 VAMGVQMLLWACGIHGATIVGGVMGPIWLGAMDENRLAFQAGEVLPNIFTAQFFEIFINV 298 Query: 289 GGAGTIFALAVCLFLFSKSNQNKSMGRLSIMPSAFNIGEPIMFGVPVVLNPIMFIPFILA 348 GG+G AL + + L ++S Q K +GRL+I P+ FNI EPI+FG+P+V+NP++ IPFIL Sbjct: 299 GGSGATLALVLTMILRARSKQMKQLGRLAIGPAIFNINEPIIFGMPIVMNPMLLIPFILT 358 Query: 349 PIAMVITTYFAMVTGLVPK 367 PI M+ITTY M TGLV K Sbjct: 359 PIMMIITTYIGMSTGLVAK 377 >B4AJQ4.1 B4AJQ4_BACPU PTS system, cellobiose-specific IIC component EC=2.7.1.69 Length = 449 Score = 329 bits (844), Expect = 2e-88, Method: Compositional matrix adjust. Identities = 173/379 (45%), Positives = 251/379 (66%), Gaps = 14/379 (3%) Query: 1 MSKIQTFMEEKVAPFAGRIGQVKQLVAIRDGISYIMPLIIIGSIALILNSLPIEANWYLN 60 M+ F+EEKV PFAG+I + L A+RDGI MPLII+GS+ LIL +LPI Y + Sbjct: 1 MNGFNRFLEEKVMPFAGKIAAQRHLQALRDGIVLTMPLIIVGSLFLILANLPIPG--YSD 58 Query: 61 LMNE---SGWGARLGMIVDGTFGLIGILAAFTIAYSLANQYSLDGMSVGILSLSSYLLST 117 M + W +L V+ TF ++ ++A F IAY LA +Y++D +S G ++++++LL+T Sbjct: 59 FMASIFGAEWATKLSYPVNATFDIMALVATFGIAYRLAEKYAVDALSSGAIAVAAFLLAT 118 Query: 118 PNIL------SADN---AAGIPLSLMGSKGLFVAIIIGIISTEIFRFVISKNLVIKLPDG 168 P + S + GIP++LMGSKGLFVA+II ++STEI+RF++ +N+VI++PDG Sbjct: 119 PYQVPFTPEGSTEAILVGGGIPVTLMGSKGLFVAMIIAMLSTEIYRFIVQRNIVIRMPDG 178 Query: 169 VPPAVGRSFTALIPGFFIIVFFAAVSWILDATGIGSLHDLIQTVLGKPLGLLGGTIFGAI 228 VPPAV +SF ALIPGF +I +++ T S+H++I ++G PL +LGG++ G+I Sbjct: 179 VPPAVSKSFIALIPGFVVITLIWVARLLIEMTPFESIHNIITVLIGTPLSILGGSLGGSI 238 Query: 229 IYDLLISLFWLTXXXXXXXXXXXXXXXWMQKMDENRLALQAGKELPNIFTQPFFDIFVHM 288 + + L W W+ MDENRLA QAG+ LPNIFT FF+IF+++ Sbjct: 239 VAIGVQMLLWACGIHGATIVGGVMGPIWLGAMDENRLAFQAGEVLPNIFTAQFFEIFINV 298 Query: 289 GGAGTIFALAVCLFLFSKSNQNKSMGRLSIMPSAFNIGEPIMFGVPVVLNPIMFIPFILA 348 GG+G AL + + L ++S Q K +GRL+I P+ FNI EPI+FG+P+V+NP++ IPFIL Sbjct: 299 GGSGATLALVLTMILRARSKQMKQLGRLAIGPAIFNINEPIIFGMPIVMNPMLLIPFILT 358 Query: 349 PIAMVITTYFAMVTGLVPK 367 PI M+ITTY M TGLV K Sbjct: 359 PIMMIITTYIGMSTGLVAK 377 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.328 0.145 0.434 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 2,126,243,327 Number of extensions: 87460051 Number of successful extensions: 311129 Number of sequences better than 1.0e-05: 1611 Number of HSP's gapped: 306120 Number of HSP's successfully gapped: 1650 Length of query: 379 Length of database: 3,060,696,203 Length adjustment: 137 Effective length of query: 242 Effective length of database: 1,770,017,148 Effective search space: 428344149816 Effective search space used: 428344149816 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 15 ( 7.1 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 40 (21.7 bits) S2: 132 (55.5 bits)