BLASTP 2.2.18 [Mar-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Query= 0440.0009.p (311 letters) Database: pfamseq 9,421,015 sequences; 3,060,696,203 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value C4IN04.1 C4IN04_CLOBU Putative uncharacterized protein 324 5e-87 B1QY53.1 B1QY53_CLOBU Putative uncharacterized protein 324 5e-87 A8UDG7.1 A8UDG7_9LACT Putative uncharacterized protein 318 3e-85 B1BTH1.1 B1BTH1_CLOPE Putative uncharacterized protein 313 1e-83 C4FUK2.1 C4FUK2_9FIRM Putative uncharacterized protein 313 1e-83 >C4IN04.1 C4IN04_CLOBU Putative uncharacterized protein Length = 302 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 171/306 (55%), Positives = 218/306 (71%), Gaps = 10/306 (3%) Query: 6 KRLLNCNASDLLAMNRDELKLSIYASEGRTILAETAVVKEPIIDGITNGEIARFAGADLL 65 KRLL+C +SD L+M ELK SI A+EGRTI +E V +EP+++GITN E+AR +GADL+ Sbjct: 7 KRLLDCESSDFLSMTSKELKQSILAAEGRTICSEMVVTREPLMNGITNAEVARASGADLM 66 Query: 66 LLNAFDLEQPQISGIDPADPQPVRTLRNLIGRPVGANLEPVDDSRETMDEKEHLGPGRRA 125 LLN DL PQI G+ P QP++ L+ L+GRP+GAN+EPVD + + ++ + + GR+ Sbjct: 67 LLNGLDLLNPQIGGL-PTCNQPIKELKKLVGRPIGANIEPVDLNADMLESRLEISEGRKC 125 Query: 126 TVSTFLQANELGLDFICLTGNPGTGVTNSAICHSISQARQHFHGLIIAGKMHSSGIDEPI 185 + T A +LGLDFICLTGNPGTGVTNSAI I A++HF GLIIAGKMH +G++EPI Sbjct: 126 SEKTLKAAQDLGLDFICLTGNPGTGVTNSAIVKGIESAKKHFSGLIIAGKMHGAGVNEPI 185 Query: 186 IDAETVQAFIDAGADIILFPAVYTVPKFREEDLTRMVEIVHTHNRSVTDPSKKVLTLSAI 245 D TV+ FI+AGADIIL PAV TVP F EE L +V H K L L+AI Sbjct: 186 CDLNTVEEFINAGADIILVPAVGTVPAFTEEQLISVVNFAH---------EKGALVLTAI 236 Query: 246 GTSQESSSKEVVQKIALACKACGVDIQHIGDAGFSGLALYQNIDALGNAIRGERHQLRMR 305 GTSQESSS EV+++ L K CGVDIQHIGDAG+SG+A +NI AL ++IRG RH L M Sbjct: 237 GTSQESSSTEVIEQFGLKNKVCGVDIQHIGDAGYSGIAPVENIFALSSSIRGLRHTLTMI 296 Query: 306 AKSIIR 311 ++SI R Sbjct: 297 SRSINR 302 >B1QY53.1 B1QY53_CLOBU Putative uncharacterized protein Length = 302 Score = 324 bits (831), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 171/306 (55%), Positives = 218/306 (71%), Gaps = 10/306 (3%) Query: 6 KRLLNCNASDLLAMNRDELKLSIYASEGRTILAETAVVKEPIIDGITNGEIARFAGADLL 65 KRLL+C +SD L+M ELK SI A+EGRTI +E V +EP+++GITN E+AR +GADL+ Sbjct: 7 KRLLDCESSDFLSMTSKELKQSILAAEGRTICSEMVVTREPLMNGITNAEVARASGADLM 66 Query: 66 LLNAFDLEQPQISGIDPADPQPVRTLRNLIGRPVGANLEPVDDSRETMDEKEHLGPGRRA 125 LLN DL PQI G+ P QP++ L+ L+GRP+GAN+EPVD + + ++ + + GR+ Sbjct: 67 LLNGLDLLNPQIGGL-PTCNQPIKELKKLVGRPIGANIEPVDLNADMLESRLEISEGRKC 125 Query: 126 TVSTFLQANELGLDFICLTGNPGTGVTNSAICHSISQARQHFHGLIIAGKMHSSGIDEPI 185 + T A +LGLDFICLTGNPGTGVTNSAI I A++HF GLIIAGKMH +G++EPI Sbjct: 126 SEKTLKAAQDLGLDFICLTGNPGTGVTNSAIVKGIESAKKHFSGLIIAGKMHGAGVNEPI 185 Query: 186 IDAETVQAFIDAGADIILFPAVYTVPKFREEDLTRMVEIVHTHNRSVTDPSKKVLTLSAI 245 D TV+ FI+AGADIIL PAV TVP F EE L +V H K L L+AI Sbjct: 186 CDLNTVEEFINAGADIILVPAVGTVPAFTEEQLISVVNFAH---------EKGALVLTAI 236 Query: 246 GTSQESSSKEVVQKIALACKACGVDIQHIGDAGFSGLALYQNIDALGNAIRGERHQLRMR 305 GTSQESSS EV+++ L K CGVDIQHIGDAG+SG+A +NI AL ++IRG RH L M Sbjct: 237 GTSQESSSTEVIEQFGLKNKVCGVDIQHIGDAGYSGIAPVENIFALSSSIRGLRHTLTMI 296 Query: 306 AKSIIR 311 ++SI R Sbjct: 297 SRSINR 302 >A8UDG7.1 A8UDG7_9LACT Putative uncharacterized protein Length = 299 Score = 318 bits (816), Expect = 3e-85, Method: Compositional matrix adjust. Identities = 161/308 (52%), Positives = 212/308 (68%), Gaps = 9/308 (2%) Query: 4 MTKRLLNCNASDLLAMNRDELKLSIYASEGRTILAETAVVKEPIIDGITNGEIARFAGAD 63 MTKR ++ NAS+++ M DELK SI ASEGR +++E V +EP I+ ITN EIAR GAD Sbjct: 1 MTKRFISANASEIMNMTADELKQSIKASEGRIVMSENVVEREPFIEDITNAEIARAFGAD 60 Query: 64 LLLLNAFDLEQPQISGIDPADPQPVRTLRNLIGRPVGANLEPVDDSRETMDEKEHLGPGR 123 L+LLN D+ P+ISG+ D V L NL+GRP+G NLEPVD+ +++ + GR Sbjct: 61 LILLNGIDVLNPKISGLSNQDGSFVDQLHNLVGRPIGVNLEPVDEEASMAEDRLTIAEGR 120 Query: 124 RATVSTFLQANELGLDFICLTGNPGTGVTNSAICHSISQARQHFHGLIIAGKMHSSGIDE 183 +A + T + LGLDF+CLTGNPGTGVTN+ I +I ++ F GLIIAGKMH +G+ E Sbjct: 121 QANLKTINEIESLGLDFVCLTGNPGTGVTNTQIEKTIRTTKEVFSGLIIAGKMHGAGVSE 180 Query: 184 PIIDAETVQAFIDAGADIILFPAVYTVPKFREEDLTRMVEIVHTHNRSVTDPSKKVLTLS 243 I+D ETV++FI+AGADIIL PAV TVP F E +L +V+ VH + L LS Sbjct: 181 SIVDLETVKSFIEAGADIILVPAVGTVPGFDEHELKEIVKAVH---------KEGALVLS 231 Query: 244 AIGTSQESSSKEVVQKIALACKACGVDIQHIGDAGFSGLALYQNIDALGNAIRGERHQLR 303 AIGTSQESS ++ +++IA+ K CGVDIQHIGDAG+ G+A +NI AL A+RG RH Sbjct: 232 AIGTSQESSDEDTIKQIAIRNKICGVDIQHIGDAGYGGIAPVENIFALSKALRGMRHTAS 291 Query: 304 MRAKSIIR 311 M A+S+ R Sbjct: 292 MMARSVHR 299 >B1BTH1.1 B1BTH1_CLOPE Putative uncharacterized protein Length = 299 Score = 313 bits (803), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 160/308 (51%), Positives = 215/308 (69%), Gaps = 9/308 (2%) Query: 4 MTKRLLNCNASDLLAMNRDELKLSIYASEGRTILAETAVVKEPIIDGITNGEIARFAGAD 63 M KRL++ NAS++L MN ELK SI ASEGRTI++E V++E I ITN EIAR GAD Sbjct: 1 MGKRLISSNASEILKMNAAELKQSIKASEGRTIISENVVIRESFIGDITNSEIARAFGAD 60 Query: 64 LLLLNAFDLEQPQISGIDPADPQPVRTLRNLIGRPVGANLEPVDDSRETMDEKEHLGPGR 123 L+LLN D+ P++ G+D + V L L+GRP+G NLEPVD S + ++ + GR Sbjct: 61 LILLNCLDVLNPKVFGLDVKEGSFVDELHRLVGRPIGVNLEPVDLSADMSEDIYTISKGR 120 Query: 124 RATVSTFLQANELGLDFICLTGNPGTGVTNSAICHSISQARQHFHGLIIAGKMHSSGIDE 183 +AT+ T + +LG+DF+C TGNPGTGVTN I +IS A+++F GLIIAGKMH +G++E Sbjct: 121 QATLETINEIEKLGMDFVCFTGNPGTGVTNLQIEKTISLAKENFSGLIIAGKMHGAGVNE 180 Query: 184 PIIDAETVQAFIDAGADIILFPAVYTVPKFREEDLTRMVEIVHTHNRSVTDPSKKVLTLS 243 P+ D + V+ FI+AGADIIL PAV TVP F + +L +V++ H SK L L+ Sbjct: 181 PVADIKAVERFIEAGADIILVPAVGTVPGFDDSELKEIVKVAH---------SKGALVLT 231 Query: 244 AIGTSQESSSKEVVQKIALACKACGVDIQHIGDAGFSGLALYQNIDALGNAIRGERHQLR 303 AIGTSQESS ++ +++IA+ K CG DIQHIGDAG+ GLA ++NI A+ AIRG RH + Sbjct: 232 AIGTSQESSDEDTIKQIAIRNKICGADIQHIGDAGYGGLAPFENIFAISKAIRGVRHTVS 291 Query: 304 MRAKSIIR 311 M A+SI R Sbjct: 292 MIARSINR 299 >C4FUK2.1 C4FUK2_9FIRM Putative uncharacterized protein Length = 299 Score = 313 bits (802), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 164/308 (53%), Positives = 205/308 (66%), Gaps = 9/308 (2%) Query: 4 MTKRLLNCNASDLLAMNRDELKLSIYASEGRTILAETAVVKEPIIDGITNGEIARFAGAD 63 M KRL++ N S++LAM+ ELK SI ASEGR IL+E KE I ITN E+AR GAD Sbjct: 1 MVKRLISANTSEILAMSAAELKQSIKASEGRVILSENVGFKESYIGDITNSEMARAFGAD 60 Query: 64 LLLLNAFDLEQPQISGIDPADPQPVRTLRNLIGRPVGANLEPVDDSRETMDEKEHLGPGR 123 L+LLN DL P IS IDP P V L L+GRP+G NLEPVD S + +E++ L GR Sbjct: 61 LILLNGVDLLNPVISAIDPNVPNFVAELHRLVGRPIGVNLEPVDASAQMNEERQELVTGR 120 Query: 124 RATVSTFLQANELGLDFICLTGNPGTGVTNSAICHSISQARQHFHGLIIAGKMHSSGIDE 183 + ++ A LG+DFICLTGNPGTGVTN I +I +QHF GL+IAGKMH +G+DE Sbjct: 121 QLNEASLQAAQALGVDFICLTGNPGTGVTNKTIASAIRLTKQHFSGLVIAGKMHGAGVDE 180 Query: 184 PIIDAETVQAFIDAGADIILFPAVYTVPKFREEDLTRMVEIVHTHNRSVTDPSKKVLTLS 243 P+ D E V FI+AGADIIL PAV +VP F E DL +V+ H L +S Sbjct: 181 PVADLEAVSQFIEAGADIILAPAVGSVPGFDEADLKAIVQRAH---------QAGALVMS 231 Query: 244 AIGTSQESSSKEVVQKIALACKACGVDIQHIGDAGFSGLALYQNIDALGNAIRGERHQLR 303 AIGTSQESS + ++++A+ K CGVDIQHIGD+G+ LA +NI AL AIRG+RH + Sbjct: 232 AIGTSQESSDTDTIKQMAIRNKICGVDIQHIGDSGYGCLAPVENIFALSKAIRGQRHTIS 291 Query: 304 MRAKSIIR 311 M A+SI R Sbjct: 292 MIARSINR 299 Database: pfamseq Posted date: Aug 5, 2010 3:22 PM Number of letters in database: 3,060,696,203 Number of sequences in database: 9,421,015 Lambda K H 0.318 0.135 0.383 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Sequences: 9421015 Number of Hits to DB: 1,746,053,053 Number of extensions: 73129988 Number of successful extensions: 195966 Number of sequences better than 1.0e-05: 97 Number of HSP's gapped: 195679 Number of HSP's successfully gapped: 97 Length of query: 311 Length of database: 3,060,696,203 Length adjustment: 135 Effective length of query: 176 Effective length of database: 1,788,859,178 Effective search space: 314839215328 Effective search space used: 314839215328 Neighboring words threshold: 11 Window for multiple hits: 40 X1: 16 ( 7.4 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.7 bits) S2: 131 (55.1 bits)