BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0440.0006.p
         (101 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

C0ZBU3.1 C0ZBU3_BREBN CotJC protein                                   165   1e-39
B3KBL6.1 B3KBL6_9BACI Manganese containing catalase                   160   3e-38
B1DKF5.1 B1DKF5_9BACL Catalase EC=1.11.1.6                            159   7e-38
A6CR85.1 A6CR85_9BACI Polypeptide composition of the spore coat       153   4e-36
C5D3I3.1 C5D3I3_9BACI Manganese containing catalase                   152   9e-36

>C0ZBU3.1 C0ZBU3_BREBN CotJC protein
          Length = 189

 Score =  165 bits (417), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 75/86 (87%), Positives = 83/86 (96%)

Query: 1  MWIYEKKLQYPVRVSKCDVRMARYLTEQYGGADGELAAALRYMNQRYAIPDKVIGVLTDI 60
          MWIYEKKLQYPVRVSKCDVRMA+YL EQYGGADGELAAALRYMNQRY IP+KV+G+LTDI
Sbjct: 1  MWIYEKKLQYPVRVSKCDVRMAKYLIEQYGGADGELAAALRYMNQRYTIPNKVVGLLTDI 60

Query: 61 STEEFAHLEMIATMIYKLTKDASISE 86
          +TEEFAHLEMIATM+YKLTKDA++ E
Sbjct: 61 ATEEFAHLEMIATMVYKLTKDATVEE 86


>B3KBL6.1 B3KBL6_9BACI Manganese containing catalase
          Length = 189

 Score =  160 bits (405), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 73/86 (84%), Positives = 80/86 (93%)

Query: 1  MWIYEKKLQYPVRVSKCDVRMARYLTEQYGGADGELAAALRYMNQRYAIPDKVIGVLTDI 60
          MW+YEKKLQYPVRVSKCD RMA++L EQYGGADGELAAALRY+NQRY IPDKVIG+L DI
Sbjct: 1  MWVYEKKLQYPVRVSKCDPRMAKFLMEQYGGADGELAAALRYLNQRYTIPDKVIGLLNDI 60

Query: 61 STEEFAHLEMIATMIYKLTKDASISE 86
           TEEFAHLEMIA M+YKLTKDAS+SE
Sbjct: 61 GTEEFAHLEMIAAMVYKLTKDASVSE 86


>B1DKF5.1 B1DKF5_9BACL Catalase EC=1.11.1.6
          Length = 191

 Score =  159 bits (403), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 73/83 (87%), Positives = 80/83 (96%)

Query: 1  MWIYEKKLQYPVRVSKCDVRMARYLTEQYGGADGELAAALRYMNQRYAIPDKVIGVLTDI 60
          MW+YEKKLQYPVRVSKCD RMARYL EQYGGADGEL+AALRY+NQRY+IPDKVIG+LTDI
Sbjct: 1  MWLYEKKLQYPVRVSKCDPRMARYLIEQYGGADGELSAALRYLNQRYSIPDKVIGLLTDI 60

Query: 61 STEEFAHLEMIATMIYKLTKDAS 83
           TEEFAHLEMIATM+YKLTKDA+
Sbjct: 61 GTEEFAHLEMIATMVYKLTKDAT 83


>A6CR85.1 A6CR85_9BACI Polypeptide composition of the spore coat
          Length = 189

 Score =  153 bits (387), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 70/83 (84%), Positives = 78/83 (93%)

Query: 1  MWIYEKKLQYPVRVSKCDVRMARYLTEQYGGADGELAAALRYMNQRYAIPDKVIGVLTDI 60
          MW+YEKKLQYPV+VS C+ R+A+YL EQYGGADGELAAALRY+NQRY IPDKVIG+LTDI
Sbjct: 1  MWVYEKKLQYPVKVSSCNPRLAKYLIEQYGGADGELAAALRYLNQRYTIPDKVIGLLTDI 60

Query: 61 STEEFAHLEMIATMIYKLTKDAS 83
           TEEFAHLEMIATMIYKLTKDA+
Sbjct: 61 GTEEFAHLEMIATMIYKLTKDAT 83


>C5D3I3.1 C5D3I3_9BACI Manganese containing catalase
          Length = 189

 Score =  152 bits (384), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 68/86 (79%), Positives = 80/86 (93%)

Query: 1  MWIYEKKLQYPVRVSKCDVRMARYLTEQYGGADGELAAALRYMNQRYAIPDKVIGVLTDI 60
          MWIYEKKLQYPVRVS C+ ++A+YL EQYGGADGELAAALRY+NQRY+IPDKV+G+LTDI
Sbjct: 1  MWIYEKKLQYPVRVSTCNPKLAKYLIEQYGGADGELAAALRYLNQRYSIPDKVVGLLTDI 60

Query: 61 STEEFAHLEMIATMIYKLTKDASISE 86
           TEE AHLEMIATM+YKLTKDA++ +
Sbjct: 61 GTEELAHLEMIATMVYKLTKDATLEQ 86


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.322    0.135    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 525,094,636
Number of extensions: 16683931
Number of successful extensions: 84757
Number of sequences better than 1.0e-05: 369
Number of HSP's gapped: 84504
Number of HSP's successfully gapped: 369
Length of query: 101
Length of database: 3,060,696,203
Length adjustment: 69
Effective length of query: 32
Effective length of database: 2,410,646,168
Effective search space: 77140677376
Effective search space used: 77140677376
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 126 (53.1 bits)