BLASTP 2.2.18 [Mar-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 0440.0005.p
         (88 letters)

Database: pfamseq 
           9,421,015 sequences; 3,060,696,203 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

B3KBL5.1 B3KBL5_9BACI Spore coat-associated protein JB                138   2e-31
C5D3I2.1 C5D3I2_9BACI CotJB protein                                   115   1e-24
C3IYQ6.1 C3IYQ6_9BACI CotJB protein                                   114   2e-24
B7Y7U1.1 B7Y7U1_9BACI CotJB protein                                   114   2e-24
A4IQC1.1 A4IQC1_GEOTN CotJB protein                                   114   3e-24

>B3KBL5.1 B3KBL5_9BACI Spore coat-associated protein JB
          Length = 91

 Score =  138 bits (347), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 64/80 (80%), Positives = 73/80 (91%)

Query: 9  RYYEMLEQLQTLDFALVELNLYLNTHPEDLRAIEQFNQLTQERTRLANQFQELYGPLQSF 68
          +YYEMLEQLQ LDF LVELNLYL+THP+DL++IEQFN+LTQERT LA QFQELYGPLQ+F
Sbjct: 12 KYYEMLEQLQALDFVLVELNLYLDTHPDDLKSIEQFNKLTQERTVLAKQFQELYGPLQNF 71

Query: 69 GRAYSKCPWEWNQTPWPWQV 88
          GRA+SK P+EW Q PWPWQV
Sbjct: 72 GRAFSKYPFEWAQGPWPWQV 91


>C5D3I2.1 C5D3I2_9BACI CotJB protein
          Length = 86

 Score =  115 bits (288), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 63/79 (79%)

Query: 10 YYEMLEQLQTLDFALVELNLYLNTHPEDLRAIEQFNQLTQERTRLANQFQELYGPLQSFG 69
          YYE+LEQLQ +DFALV+L LYL+THP D +AI+QFNQL Q+R +L  QF+  YGPLQ +G
Sbjct: 8  YYELLEQLQAVDFALVDLTLYLDTHPTDYQAIQQFNQLAQKRKQLKKQFESCYGPLQQYG 67

Query: 70 RAYSKCPWEWNQTPWPWQV 88
           +YS  PW WN +PWPWQV
Sbjct: 68 NSYSNYPWNWNDSPWPWQV 86


>C3IYQ6.1 C3IYQ6_9BACI CotJB protein
          Length = 86

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 62/79 (78%)

Query: 10 YYEMLEQLQTLDFALVELNLYLNTHPEDLRAIEQFNQLTQERTRLANQFQELYGPLQSFG 69
          YYE LE+LQ +DFALVEL LYL+THP D +AI+QFNQL Q+R +L  QF+  YGPL+ FG
Sbjct: 8  YYEQLEELQAVDFALVELTLYLDTHPTDYQAIQQFNQLAQKRKQLKKQFEAAYGPLEQFG 67

Query: 70 RAYSKCPWEWNQTPWPWQV 88
           +YS  PW W+ TPWPWQV
Sbjct: 68 HSYSNYPWNWDDTPWPWQV 86


>B7Y7U1.1 B7Y7U1_9BACI CotJB protein
          Length = 86

 Score =  114 bits (286), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 62/79 (78%)

Query: 10 YYEMLEQLQTLDFALVELNLYLNTHPEDLRAIEQFNQLTQERTRLANQFQELYGPLQSFG 69
          YYE LE+LQ +DFALVEL LYL+THP D +AI+QFNQL Q+R +L  QF+  YGPL+ FG
Sbjct: 8  YYEQLEELQAVDFALVELTLYLDTHPTDYQAIQQFNQLAQKRKQLKKQFEAAYGPLEQFG 67

Query: 70 RAYSKCPWEWNQTPWPWQV 88
           +YS  PW W+ TPWPWQV
Sbjct: 68 HSYSNYPWNWDDTPWPWQV 86


>A4IQC1.1 A4IQC1_GEOTN CotJB protein
          Length = 86

 Score =  114 bits (284), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 51/79 (64%), Positives = 62/79 (78%)

Query: 10 YYEMLEQLQTLDFALVELNLYLNTHPEDLRAIEQFNQLTQERTRLANQFQELYGPLQSFG 69
          YYE LE+LQ +DFALVEL LYL+THP D +AI+QFNQL Q+R +L  QF+  YGPL+ FG
Sbjct: 8  YYERLEELQAVDFALVELTLYLDTHPTDYQAIQQFNQLAQKRRQLKKQFEAAYGPLEQFG 67

Query: 70 RAYSKCPWEWNQTPWPWQV 88
           +YS  PW W+ TPWPWQV
Sbjct: 68 HSYSNYPWNWDDTPWPWQV 86


  Database: pfamseq
    Posted date:  Aug 5, 2010  3:22 PM
  Number of letters in database: 3,060,696,203
  Number of sequences in database:  9,421,015
  
Lambda     K      H
   0.319    0.133    0.439 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 9421015
Number of Hits to DB: 513,511,671
Number of extensions: 16617740
Number of successful extensions: 51200
Number of sequences better than 1.0e-05: 163
Number of HSP's gapped: 51173
Number of HSP's successfully gapped: 163
Length of query: 88
Length of database: 3,060,696,203
Length adjustment: 58
Effective length of query: 30
Effective length of database: 2,514,277,333
Effective search space: 75428319990
Effective search space used: 75428319990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 125 (52.8 bits)